17-19645998-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19645998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19645998
    reference: chr 17
allele count: 2
allele frequency: 2.046203269832825e-5
allele num: 97742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.885G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.316G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-55G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-55G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11638
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

17-19646005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646005
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646005
    reference: chr 17
allele count: 537
allele frequency: 5.845088819226751e-3
allele num: 91872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.309T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.878T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-62T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-62T>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 2.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 13275
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 1.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23644
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 10
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

17-19646013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646013
    reference: chr 17
allele count: 6
allele frequency: 7.20686093160689e-5
allele num: 83254
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.870G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-70G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-19646015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646015
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646015
    reference: chr 17
allele count: 1
allele frequency: 1.236155063291139e-5
allele num: 80896
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.299G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.868G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-72G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-19646024-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646025
    reference: chr 17
allele count: 1
allele frequency: 1.347418346448205e-5
allele num: 74216
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.289dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.858dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-82dupG
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-82dupG
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

17-19646025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646025
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646025
    reference: chr 17
allele count: 1
allele frequency: 1.347200517324999e-5
allele num: 74228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.289G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.858G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-82G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-82G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-19646032-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646032
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646032
    reference: chr 17
allele count: 12
allele frequency: 1.733352592806587e-4
allele num: 69230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.282T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.851T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-89T>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17856
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20324
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-19646033-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646033
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646033
    reference: chr 17
allele count: 2
allele frequency: 2.973270300002973e-5
allele num: 67266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.850A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-90A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.281A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-90A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-19646034-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646034
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646034
    reference: chr 17
allele count: 1
allele frequency: 1.486414174445567e-5
allele num: 67276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.280A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.849A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-91A>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-91A>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

17-19646038-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646038
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646038
    reference: chr 17
allele count: 1
allele frequency: 1.620377872119778e-5
allele num: 61714
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.276A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.845A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-95A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-95A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-19646042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646042
    reference: chr 17
allele count: 2
allele frequency: 3.495647918341665e-5
allele num: 57214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-1G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.841G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-99G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
hgvs: n.273-1G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-19646045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646045
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646045
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 52592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.838C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-4C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-102C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-102C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
hgvs: n.273-4C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

17-19646045-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646045
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646045
    reference: chr 17
allele count: 1
allele frequency: 1.9014298752662e-5
allele num: 52592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.838C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-102C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-4C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-102C>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31441
  bin: 2.25e1
  variant carriers: 0
hgvs: n.273-4C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

17-19646046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646046
    reference: chr 17
allele count: 1
allele frequency: 1.929161200709931e-5
allele num: 51836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-5C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.837C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-103C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 2.75e1
  variant carriers: 0
hgvs: n.273-5C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-19646047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646047
    reference: chr 17
allele count: 2
allele frequency: 4.073153843020651e-5
allele num: 49102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.836C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-6C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-104C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
hgvs: n.273-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-19646049-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646049
    reference: chr 17
allele count: 3
allele frequency: 6.285091762339731e-5
allele num: 47732
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-8G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.834G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-106G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-106G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15317
  bin: 7.5e0
  variant carriers: 0
hgvs: n.273-8G>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-19646049-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646048
    reference: chr 17
allele count: 2
allele frequency: 4.190061174893154e-5
allele num: 47732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-9delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.833delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-107delT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-107delT
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: CA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

17-19646057-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646057
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646057
    reference: chr 17
allele count: 1
allele frequency: 2.56910903298736e-5
allele num: 38924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-16C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.826C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-114C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-114C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-19646057-GGAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646057
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646054
    reference: chr 17
allele count: 4
allele frequency: 1.027643613194944e-4
allele num: 38924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-117_365-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-117_176-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-117_270-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.823_825delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-19_273-17delTTC
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-117_395-115delTTC
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: GGAA
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

17-19646075-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646075
    reference: chr 17
allele count: 1
allele frequency: 3.710024486161608e-5
allele num: 26954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.808G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-34G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-132G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-132G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28561
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

17-19646075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646075
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646075
    reference: chr 17
allele count: 2
allele frequency: 7.420048972323217e-5
allele num: 26954
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.808G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-34G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-132G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-19646081-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646081
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646079
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 22902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-140_365-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-140_270-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.800_801delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-140_395-139delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-42_273-41delAT
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-140_176-139delAT
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: CAT
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-19646083-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646083
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646083
    reference: chr 17
allele count: 1
allele frequency: 4.54008898574412e-5
allele num: 22026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-42A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.800A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-140A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-140A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

17-19646088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646088
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646088
    reference: chr 17
allele count: 1
allele frequency: 4.981071926678621e-5
allele num: 20076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.795G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-47G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-145G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-145G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

17-19646089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646089
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646089
    reference: chr 17
allele count: 2
allele frequency: 9.986019572598362e-5
allele num: 20028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-48C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.794C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-146C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-19646096-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646096
    reference: chr 17
allele count: 14
allele frequency: 7.620291748312649e-4
allele num: 18372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-55T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.787T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-153T>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30895
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

17-19646108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646108
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646108
    reference: chr 17
allele count: 3
allele frequency: 1.771583795913547e-4
allele num: 16934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.775C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-67C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-165C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-165C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-19646111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646111
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646111
    reference: chr 17
allele count: 20
allele frequency: 1.193744777366599e-3
allele num: 16754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.772G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-70G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-168G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-168G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27926
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

17-19646112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646112
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646112
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.771C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-71C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-169C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-169C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27767
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

17-19646114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646114
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646114
    reference: chr 17
allele count: 66
allele frequency: 4.001940334707737e-3
allele num: 16492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.769C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-73C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-171C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26846
  bin: 2.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.25e1
  variant carriers: 9
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-19646124-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646124
    reference: chr 17
allele count: 21
allele frequency: 1.301760476072403e-3
allele num: 16132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.759C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-83C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-181C>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24981
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-19646124-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646124
    reference: chr 17
allele count: 1
allele frequency: 6.198859409868585e-5
allele num: 16132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.759C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-181C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-83C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-181C>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-19646136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646136
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646136
    reference: chr 17
allele count: 64
allele frequency: 4.157463946992335e-3
allele num: 15394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.747G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-193G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20520
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 3
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-19646137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646137
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646137
    reference: chr 17
allele count: 1
allele frequency: 6.507874528179097e-5
allele num: 15366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.746C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-96C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-194C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20674
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/17-19646144-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646144
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646144
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 15102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.739G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-103G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-201G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-201G>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-19646144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646144
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646144
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 15102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.739G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-103G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-201G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-201G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-19646145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646145
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646145
    reference: chr 17
allele count: 1
allele frequency: 6.68985817500669e-5
allele num: 14948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.738C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-104C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-202C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

17-19646191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646191
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646191
    reference: chr 17
allele count: 1
allele frequency: 6.977393245883338e-5
allele num: 14332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-248C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.692C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-150C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-248C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-19646218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646218
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646218
    reference: chr 17
allele count: 11
allele frequency: 7.776049766718507e-4
allele num: 14146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.665G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-275G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-177G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

17-19646230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646230
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646230
    reference: chr 17
allele count: 1
allele frequency: 7.075137965190322e-5
allele num: 14134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.365-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.270-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.653C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.176-287C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-189C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.395-287C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4827
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

17-19646244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646244
    reference: chr 17
allele count: 8
allele frequency: 5.670541536716756e-4
allele num: 14108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.639G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-203G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+301G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+301G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

17-19646269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646269
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646269
    reference: chr 17
allele count: 1
allele frequency: 7.118451025056947e-5
allele num: 14048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.614G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-228G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+276G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+276G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

17-19646283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646283
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646283
    reference: chr 17
allele count: 1
allele frequency: 7.138777841233581e-5
allele num: 14008
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.600C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.273-242C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+262C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+262C>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-19646302-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646302
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646302
    reference: chr 17
allele count: 1
allele frequency: 7.187005893344832e-5
allele num: 13914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.581G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+243G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+243G>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-19646304-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646304
    reference: chr 17
allele count: 58
allele frequency: 4.173862982153138e-3
allele num: 13896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.579G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+241G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+241G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 7982
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-19646312-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646312
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646312
    reference: chr 17
allele count: 1
allele frequency: 7.232749891508752e-5
allele num: 13826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.571C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+233C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+233C>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-19646329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646329
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646329
    reference: chr 17
allele count: 1
allele frequency: 7.285443683520327e-5
allele num: 13726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.554G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+216G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-19646342-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646342
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646342
    reference: chr 17
allele count: 1
allele frequency: 7.312079555425563e-5
allele num: 13676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.541G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+203G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+203G>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

17-19646443-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646443
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 18720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.440T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.513T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+102T>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+102T>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21850
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

17-19646450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646450
    reference: chr 17
allele count: 1
allele frequency: 4.84402247626429e-5
allele num: 20644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.506G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.433G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+95G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+95G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26816
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-19646451-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646451
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.432G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+94G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.505G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+94G>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27531
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

17-19646455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646455
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646455
    reference: chr 17
allele count: 1
allele frequency: 4.344803614876608e-5
allele num: 23016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.428C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.501C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+90C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+90C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-19646458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646458
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646458
    reference: chr 17
allele count: 1
allele frequency: 4.077638231936063e-5
allele num: 24524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.425A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.498A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+87A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31710
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-19646469-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646469
    reference: chr 17
allele count: 2
allele frequency: 6.451612903225807e-5
allele num: 31000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.414C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.487C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+76C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+76C>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-19646492-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646492
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646492
    reference: chr 17
allele count: 2
allele frequency: 3.652167561447719e-5
allele num: 54762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.391A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.464A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+53A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+53A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-19646499-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646499
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646499
    reference: chr 17
allele count: 26
allele frequency: 3.927017883035283e-4
allele num: 66208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.384A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.457A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+46A>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24518
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18746
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

17-19646501-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646501
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646501
    reference: chr 17
allele count: 2
allele frequency: 2.848110278829996e-5
allele num: 70222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.455C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.382C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+44C>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+44C>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-19646504-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646504
    reference: chr 17
allele count: 4
allele frequency: 5.382131324004306e-5
allele num: 74320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.452C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.379C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+41C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+41C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

17-19646506-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646506
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646506
    reference: chr 17
allele count: 332
allele frequency: 4.31909247020867e-3
allele num: 76868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.450G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.377G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+39G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+39G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22571
  bin: 2.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

17-19646507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646507
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646507
    reference: chr 17
allele count: 19
allele frequency: 2.388735227558461e-4
allele num: 79540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.376C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.449C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+38C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+38C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23731
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

17-19646508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646508
    reference: chr 17
allele count: 1
allele frequency: 1.223870367650658e-5
allele num: 81708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.375C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.448C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+37C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+37C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-19646508-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646508
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 81708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.375C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.448C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+37C>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+37C>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18434
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

17-19646510-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646510
    reference: chr 17
allele count: 1
allele frequency: 1.168661181750187e-5
allele num: 85568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.373C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.446C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+35C>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+35C>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-19646511-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646511
    reference: chr 17
allele count: 1
allele frequency: 1.150800957466397e-5
allele num: 86896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.445G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.372G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+34G>T
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26496
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-19646521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646521
    reference: chr 17
allele count: 563
allele frequency: 5.553034935789952e-3
allele num: 101386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.435A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.362A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+24A>G
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+24A>G
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33435
  bin: 2.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 2.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 12
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

17-19646523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646523
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646523
    reference: chr 17
allele count: 1
allele frequency: 9.674173825555298e-6
allele num: 103368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.360G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.433G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+22G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

17-19646525-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646525
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646525
    reference: chr 17
allele count: 3
allele frequency: 2.849327558696148e-5
allele num: 105288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.358G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.431G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+20G>C
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+20G>C
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35337
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-19646525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19646525
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 19646525
    reference: chr 17
allele count: 1
allele frequency: 9.497758528987159e-6
allele num: 105288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000434685
  ensembl transcript: ENST00000468746
  gene symbol: ALDH3A1
  hgvsc: ENST00000468746.1:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000225740
  ensembl transcript: ENST00000225740
  gene symbol: ALDH3A1
  hgvsc: ENST00000225740.6:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000389766
  ensembl transcript: ENST00000439102
  gene symbol: ALDH3A1
  hgvsc: ENST00000439102.2:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000378923
  ensembl transcript: ENST00000395555
  gene symbol: ALDH3A1
  hgvsc: ENST00000395555.3:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485472
  gene symbol: ALDH3A1
  hgvsc: ENST00000485472.3:n.269+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000479677
  gene symbol: ALDH3A1
  hgvsc: ENST00000479677.2:n.358G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000460482
  ensembl transcript: ENST00000494157
  gene symbol: ALDH3A1
  hgvsc: ENST00000494157.2:c.175+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388369
  ensembl transcript: ENST00000426645
  gene symbol: ALDH3A1
  hgvsc: ENST00000426645.2:c.364+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000575860
  gene symbol: ALDH3A1
  hgvsc: ENST00000575860.1:n.431G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000411821
  ensembl transcript: ENST00000457500
  gene symbol: ALDH3A1
  hgvsc: ENST00000457500.2:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl protein: ENSP00000388469
  ensembl transcript: ENST00000444455
  gene symbol: ALDH3A1
  hgvsc: ENST00000444455.1:c.394+20G>A
  variant of: http://identifiers.org/hgnc/405
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108602
  ensembl transcript: ENST00000485231
  gene symbol: ALDH3A1
  hgvsc: ENST00000485231.1:n.272+20G>A
  variant of: http://identifiers.org/hgnc/405
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35337
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1802
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 826
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26520
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19341
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.390433815350389e-4
allele num: 14384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.196641e6

GenotypeQuality
all individuals: 1080
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 684
bin: 9.75e1
variant carriers: 519

GenotypeQuality
all individuals: 1955
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22665
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 756
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3385
bin: 6.75e1
variant carriers: 2

Latino
type: Population
allele count: 3
allele frequency: 3.926701570680628e-4
allele num: 7640
num of homozygotes: 0

East Asian
type: Population
allele count: 468
allele frequency: 7.514450867052024e-2
allele num: 6228
num of homozygotes: 10

Other
type: Population
allele count: 2
allele frequency: 2.724795640326975e-3
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.788889775720329e-4
allele num: 50116
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.875215641173088e-3
allele num: 13912
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

DP
type: SiteQuality
SIO_000300: 1.098957e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 4.24e0

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
all individuals: 2591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28631
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13264
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 9.06070673512534e-4
allele num: 6622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45034
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.435e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 9.73147e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43626
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.883239171374765e-4
allele num: 5310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7076
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

FS
type: SiteQuality
SIO_000300: 1.892e0

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

QD
type: SiteQuality
SIO_000300: 8.26e0

DP
type: SiteQuality
SIO_000300: 9.46611e5

GenotypeQuality
all individuals: 551
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.520034272466106e-5
allele num: 39682
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 8.73137e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.067e1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 292
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 355
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3925
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32453
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.521305027482225e-5
allele num: 39662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.578e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.254e0

QD
type: SiteQuality
SIO_000300: 1.143e1

DP
type: SiteQuality
SIO_000300: 8.71461e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 4.908e0

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.958e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 280
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 11378
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36674
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.747252747252747e-3
allele num: 4368
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.653e1

DP
type: SiteQuality
SIO_000300: 8.18792e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6245
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 426
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.674200569228193e-4
allele num: 11946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.98794e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

FS
type: SiteQuality
SIO_000300: 8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6249
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variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
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GenotypeQuality
all individuals: 1834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 1

GenotypeQuality
all individuals: 647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.817536346218866e-5
allele num: 35492
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.6e-2

MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 2.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

QD
type: SiteQuality
SIO_000300: 1.786e1

VQSLOD
type: SiteQuality
SIO_000300: -9.036e-1

DP
type: SiteQuality
SIO_000300: 7.97597e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3770
num of homozygotes: 0

African
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allele frequency: 1.826150474799123e-4
allele num: 5476
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32262
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 7.95e-1

MQ
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SIO_000300: 5.871e1

MQRankSum
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DP
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FS
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.148e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.791793585378964e-4
allele num: 11162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
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SIO_000300: 9.84e0

BaseQRankSum
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SIO_000300: -2.663e0

FS
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.89e1

MQRankSum
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SIO_000300: -1.89e-1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -2.35e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.69e-1

DP
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SIO_000300: 7.13449e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

FS
type: SiteQuality
SIO_000300: 1.557e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 6.79732e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 3.232062055591467e-4
allele num: 3094
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26984
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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InbreedingCoeff
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SIO_000300: 2.23e-2

FS
type: SiteQuality
SIO_000300: 1.557e0

MQ
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2904
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South Asian
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allele count: 1
allele frequency: 9.312721177127957e-5
allele num: 10738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3506
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African
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allele frequency: 0.0e0
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Other
type: Population
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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QD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 24928
num of homozygotes: 0

European (Finnish)
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Other
type: Population
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Latino
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African
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South Asian
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East Asian
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MQRankSum
type: SiteQuality
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FS
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MQ
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VQSLOD
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 1.243781094527363e-4
allele num: 24120
num of homozygotes: 0

African
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.291873963515754e-5
allele num: 24120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.515e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

DP
type: SiteQuality
SIO_000300: 6.38511e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.272593061267531e-5
allele num: 18966
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

DP
type: SiteQuality
SIO_000300: 5.74221e5

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.965e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

QD
type: SiteQuality
SIO_000300: 1.85e1

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 4.140786749482402e-4
allele num: 9660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.445e0

DP
type: SiteQuality
SIO_000300: 5.74221e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.85e1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: -1.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

GenotypeQuality
all individuals: 139
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 423
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 4.59626e5

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

FS
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.144e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14510
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11762
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.78816199376947e-4
allele num: 2568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

FS
type: SiteQuality
SIO_000300: 2.94e0

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

DP
type: SiteQuality
SIO_000300: 4.59626e5

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.144e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.166666666666667e-3
allele num: 240
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8216
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.69e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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SIO_000300: -1.055e0

MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 4.04358e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.336183858898984e-4
allele num: 7484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
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SIO_000300: -7.02e-2

BaseQRankSum
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SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.016e0

DP
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SIO_000300: 3.82033e5

FS
type: SiteQuality
SIO_000300: 3.079e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
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allele frequency: 5.995203836930455e-4
allele num: 1668
num of homozygotes: 0

African
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allele frequency: 5.599104143337066e-4
allele num: 1786
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 404
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Other
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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MQRankSum
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SIO_000300: 7.42e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.521298174442191e-3
allele num: 7888
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

Latino
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allele frequency: 2.873563218390805e-3
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.566416040100251e-4
allele num: 6384
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.50942e5

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.773e0

MQ
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SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.855050115651503e-4
allele num: 7782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.574e0

DP
type: SiteQuality
SIO_000300: 3.17577e5

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.809e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.424657534246575e-3
allele num: 292
num of homozygotes: 0

African
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allele count: 16
allele frequency: 1.27591706539075e-2
allele num: 1254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.586592178770949e-4
allele num: 5370
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
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SIO_000300: 1.156e0

VQSLOD
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BaseQRankSum
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SIO_000300: 1.12e0

QD
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InbreedingCoeff
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SIO_000300: -7.59e-2

DP
type: SiteQuality
SIO_000300: 3.11491e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 284
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
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MQ
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FS
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QD
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: -7.55e-2

GenotypeQuality
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variant carriers: 69

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 206
num of homozygotes: 0

African
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allele frequency: 8.305647840531562e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.724798773476428e-3
allele num: 5218
num of homozygotes: 0

Latino
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East Asian
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South Asian
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allele frequency: 1.162190082644628e-3
allele num: 7744
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European (Finnish)
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MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 310
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
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African
type: Population
allele count: 21
allele frequency: 1.868327402135231e-2
allele num: 1124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
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South Asian
type: Population
allele count: 0
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allele num: 7718
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
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QD
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.99203187250996e-4
allele num: 5020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 2.89049e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 9

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 64

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 2

East Asian
type: Population
allele count: 23
allele frequency: 7.931034482758621e-2
allele num: 290
num of homozygotes: 1

South Asian
type: Population
allele count: 25
allele frequency: 3.262855651265988e-3
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1490
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.504504504504504e-3
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.812635222847252e-3
allele num: 4622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 914
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.030927835051546e-2
allele num: 194
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

BaseQRankSum
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SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

DP
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SIO_000300: 2.6586e5

InbreedingCoeff
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SIO_000300: -6.94e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.170138888888889e-4
allele num: 4608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.329e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

BaseQRankSum
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SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

DP
type: SiteQuality
SIO_000300: 2.6185e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: -1.668e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 1916
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.59e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 2.52702e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 7.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 283
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
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GenotypeQuality
all individuals: 139
bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4500
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17210
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 35
bin: 4.25e1
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GenotypeQuality
all individuals: 312
bin: 1.75e1
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GenotypeQuality
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.59e-2

QD
type: SiteQuality
SIO_000300: 7.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 2.52702e5

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 139
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.30821559392988e-4
allele num: 7644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.32e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.4754e5

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
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GenotypeQuality
all individuals: 900
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.497502497502498e-4
allele num: 4004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
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FS
type: SiteQuality
SIO_000300: 5.727e0

QD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
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SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.361e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1003
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
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allele count: 11
allele frequency: 1.936619718309859e-2
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-2

DP
type: SiteQuality
SIO_000300: 2.0692e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 1.264e1

FS
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317870321560359e-4
allele num: 7588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.04543e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.124e1

GenotypeQuality
all individuals: 72
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 6084
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1024
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variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.05736188210415e-3
allele num: 7566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

FS
type: SiteQuality
SIO_000300: 2.48e0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.16e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 2.02736e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.557e-1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.328727079457879e-4
allele num: 7526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.494e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -1.606e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.24e-2

QD
type: SiteQuality
SIO_000300: 6.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.0164e5

VQSLOD
type: SiteQuality
SIO_000300: -2.876e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.74e-1

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 980
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 562
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.602811035918792e-4
allele num: 3842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.262e0

MQRankSum
type: SiteQuality
SIO_000300: -1.262e0

DP
type: SiteQuality
SIO_000300: 2.00929e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.626050420168067e-4
allele num: 3808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 4.738e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.98322e5

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.91e-2

QD
type: SiteQuality
SIO_000300: 1.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 57

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.111111111111111e-2
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 56
allele frequency: 7.55939524838013e-3
allele num: 7408
num of homozygotes: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.82e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.97388e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.359434475258292e-4
allele num: 7356
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 216
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Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.866e1

QD
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
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SIO_000300: -6.67e-1

DP
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SIO_000300: 1.9068e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 211
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.376273052573631e-4
allele num: 7266
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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Other
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InbreedingCoeff
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MQRankSum
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DP
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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South Asian
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allele frequency: 1.386193512614361e-4
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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SIO_000300: -7.31e-1

ClippingRankSum
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DP
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.255650426921145e-4
allele num: 7964
num of homozygotes: 0

East Asian
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Other
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Latino
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South Asian
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African
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European (Finnish)
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QD
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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DP
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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VQSLOD
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SIO_000300: 1.45e0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 505
bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 8.862105636299185e-5
allele num: 11284
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.399048266485384e-5
allele num: 29420
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.03e-2

BaseQRankSum
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SIO_000300: -1.26e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36376
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.107652399481193e-3
allele num: 12336
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

BaseQRankSum
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InbreedingCoeff
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FS
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QD
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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MQRankSum
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SIO_000300: 4.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 12622
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.17170045510964e-5
allele num: 38672
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -5.9e-3

ReadPosRankSum
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DP
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MQ
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MQRankSum
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QD
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VQSLOD
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SIO_000300: 8.55e-1

BaseQRankSum
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SIO_000300: -3.135e0

ClippingRankSum
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SIO_000300: -5.55e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5902
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.440214738897023e-5
allele num: 40980
num of homozygotes: 0

South Asian
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allele frequency: 2.321262766945218e-4
allele num: 12924
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Other
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
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SIO_000300: -5.1e-3

QD
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ReadPosRankSum
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MQRankSum
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FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.114081996434938e-3
allele num: 4488
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.621037463976945e-3
allele num: 5552
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.215434083601286e-3
allele num: 622
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African
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allele frequency: 1.631853785900783e-4
allele num: 6128
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 287
allele frequency: 6.774939804541806e-3
allele num: 42362
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South Asian
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allele frequency: 2.145922746781116e-3
allele num: 13048
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.425283156740957e-4
allele num: 43792
num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele frequency: 5.023442732752846e-4
allele num: 5972
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 7.558578987150416e-5
allele num: 13230
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QD
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FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 2.222716159146477e-5
allele num: 44990
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African
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DP
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MQ
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QD
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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East Asian
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MQRankSum
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FS
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.122691572914455e-5
allele num: 47110
num of homozygotes: 0

East Asian
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MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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MQRankSum
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SIO_000300: -1.322e0

ClippingRankSum
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SIO_000300: 3.4e-1

ReadPosRankSum
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SIO_000300: -4.53e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 150
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.089864158829676e-5
allele num: 47850
num of homozygotes: 0

South Asian
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allele count: 0
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Latino
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num of homozygotes: 0

Other
type: Population
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.5848e1

ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-3

VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 536

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 23
allele frequency: 4.120239332162946e-4
allele num: 55822
num of homozygotes: 0

East Asian
type: Population
allele count: 496
allele frequency: 7.091792965398913e-2
allele num: 6994
num of homozygotes: 12

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 2
allele frequency: 2.610966057441253e-3
allele num: 766
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Latino
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allele count: 3
allele frequency: 3.329633740288568e-4
allele num: 9010
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South Asian
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allele count: 39
allele frequency: 2.626616379310345e-3
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BaseQRankSum
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SIO_000300: 1.36e0

ReadPosRankSum
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QD
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VQSLOD
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FS
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DP
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MQ
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ClippingRankSum
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MQRankSum
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SIO_000300: 1.44e-1

InbreedingCoeff
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SIO_000300: 2.45e-2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.182592242194891e-4
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 15024
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InbreedingCoeff
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SIO_000300: -2.0e-3

MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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SIO_000300: 2.494e0

QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

East Asian
type: Population
allele count: 3
allele frequency: 4.068348250610252e-4
allele num: 7374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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African
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Latino
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ClippingRankSum
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FS
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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