17-47801816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47801816
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47801816
    reference: chr 17
allele count: 1
allele frequency: 9.28332714444857e-5
allele num: 10772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.393-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.289-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.367-4018A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.254-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.659-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.367-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-450-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.372-1860A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000427326
  ensembl transcript: ENST00000511743
  gene symbol: FAM117A
  hgvsc: ENST00000511743.1:c.-25A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.496-4018A>G
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-47801841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47801841
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47801841
    reference: chr 17
allele count: 2
allele frequency: 1.856665428889714e-4
allele num: 10772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-450-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.367-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.367-4043G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.254-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000427326
  ensembl transcript: ENST00000511743
  gene symbol: FAM117A
  hgvsc: ENST00000511743.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.659-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.393-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.372-1885G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.496-4043G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.289-1885G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

17-47809864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809864
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809864
    reference: chr 17
allele count: 2
allele frequency: 1.730014013113506e-5
allele num: 115606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9908G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+49G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+49G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9892
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-47809866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809866
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809866
    reference: chr 17
allele count: 1
allele frequency: 8.646629543803825e-6
allele num: 115652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+47G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9910G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10950
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-47809868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809868
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809868
    reference: chr 17
allele count: 4
allele frequency: 3.463623296330291e-5
allele num: 115486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9912G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+45G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+45G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-47809869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809869
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809869
    reference: chr 17
allele count: 1
allele frequency: 8.642444774777888e-6
allele num: 115708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9913C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+44C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+44C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-47809875-T-TCCTTATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809875
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809882
    reference: chr 17
allele count: 1
allele frequency: 8.573241199567908e-6
allele num: 116642
alternate allele: TCCTTATC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+31_495+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+31_-451+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+31_273+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+31_366+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+31_366+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+31_288+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+31_253+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+31_392+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+31_658+37dupGATAAGG
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

17-47809885-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809885
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809885
    reference: chr 17
allele count: 1
allele frequency: 8.508321138073035e-6
allele num: 117532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9929A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+28A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+28A>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-47809887-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809887
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809887
    reference: chr 17
allele count: 3
allele frequency: 2.544572427013181e-5
allele num: 117898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9931T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+26T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+26T>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14740
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-47809892-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809892
    reference: chr 17
allele count: 1
allele frequency: 8.439388313135065e-6
allele num: 118492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9936T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+21T>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+21T>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

17-47809900-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809900
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809900
    reference: chr 17
allele count: 1
allele frequency: 8.390528771123156e-6
allele num: 119182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9944T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+13T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+13T>C
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36089
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5138
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

17-47809903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809903
    reference: chr 17
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9947C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+10C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

17-47809903-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809903
    reference: chr 17
allele count: 1
allele frequency: 8.378296859814337e-6
allele num: 119356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9947C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+10C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+10C>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46816
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

17-47809908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809908
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809908
    reference: chr 17
allele count: 3
allele frequency: 2.506977754750723e-5
allele num: 119666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.495+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.392+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.366+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9952T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.273+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.288+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.658+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.253+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.366+5T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-451+5T>C
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5234
  bin: 6.75e1
  variant carriers: 0
hgvs: c.366+5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-47809922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809922
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809922
    reference: chr 17
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.279G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.357G>A
  hgvsp: ENST00000506156.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.383G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-460G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.486G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.357G>A
  hgvsp: ENST00000240364.2:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.264G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.649G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.244G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9966G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys119Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

17-47809935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809935
    reference: chr 17
allele count: 4
allele frequency: 3.316749585406302e-5
allele num: 120600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.370G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.231G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.636G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-473G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.251G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.344G>A
  hgvsp: ENSP00000421412.1:p.Cys115Tyr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.473G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.266G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9979G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.344G>A
  hgvsp: ENSP00000240364.2:p.Cys115Tyr
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys115Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-47809950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809950
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809950
    reference: chr 17
allele count: 7
allele frequency: 5.800560168381975e-5
allele num: 120678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-488G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.621G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.329G>A
  hgvsp: ENSP00000240364.2:p.Gly110Glu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.458G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.355G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.216G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-9994G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.329G>A
  hgvsp: ENSP00000421412.1:p.Gly110Glu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.251G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.236G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17981
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47964
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly110Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

17-47809957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809957
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809957
    reference: chr 17
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.244G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.209G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.322G>A
  hgvsp: ENSP00000421412.1:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10001G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.614G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.451G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.322G>A
  hgvsp: ENSP00000240364.2:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-495G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.348G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.229G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18052
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala108Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-47809962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47809962
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47809962
    reference: chr 17
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.609G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.224G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.343G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.446G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-500G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.317G>A
  hgvsp: ENSP00000240364.2:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.239G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.204G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.317G>A
  hgvsp: ENSP00000421412.1:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10006G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg106Gln
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-47810009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810009
    reference: chr 17
allele count: 2
allele frequency: 1.676530252988415e-5
allele num: 119294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-547C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.296C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.192C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10053C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.157C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.177C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.270C>T
  hgvsp: ENST00000240364.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.270C>T
  hgvsp: ENST00000506156.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.562C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.399C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe90Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-47810011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810011
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810011
    reference: chr 17
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.268T>C
  hgvsp: ENSP00000240364.2:p.Phe90Leu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.560T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10055T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.155T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.397T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.175T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.294T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-549T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.268T>C
  hgvsp: ENSP00000421412.1:p.Phe90Leu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.190T>C
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe90Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-47810016-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810016
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810016
    reference: chr 17
allele count: 2
allele frequency: 1.685630004214075e-5
allele num: 118650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.185G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.170G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.263G>T
  hgvsp: ENSP00000421412.1:p.Arg88Leu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.392G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.289G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.263G>T
  hgvsp: ENSP00000240364.2:p.Arg88Leu
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.150G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10060G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-554G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.555G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg88Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-47810017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810017
    reference: chr 17
allele count: 3
allele frequency: 2.529852256628213e-5
allele num: 118584
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.262C>T
  hgvsp: ENSP00000240364.2:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.262C>T
  hgvsp: ENSP00000421412.1:p.Arg88Cys
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10061C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.554C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.391C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-555C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.184C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.169C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.288C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.149C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17918
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45164
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg88Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-47810019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810019
    reference: chr 17
allele count: 1
allele frequency: 8.451370812345762e-6
allele num: 118324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.260G>A
  hgvsp: ENSP00000421412.1:p.Arg87Gln
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.552G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.260G>A
  hgvsp: ENSP00000240364.2:p.Arg87Gln
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.167G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-557G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.286G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10063G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.147G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.389G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.182G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg87Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-47810021-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810021
    reference: chr 17
allele count: 1
allele frequency: 8.472135147499873e-6
allele num: 118034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.165C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.258C>A
  hgvsp: ENST00000506156.1:c.258C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.284C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-559C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10065C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.180C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.145C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.258C>A
  hgvsp: ENST00000240364.2:c.258C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.387C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.550C>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val86Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-47810023-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810023
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810023
    reference: chr 17
allele count: 1
allele frequency: 8.489829184636805e-6
allele num: 117788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.282G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.548G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-561G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.256G>T
  hgvsp: ENSP00000421412.1:p.Val86Phe
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.178G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.385G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.163G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.256G>T
  hgvsp: ENSP00000240364.2:p.Val86Phe
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10067G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.143G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44366
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val86Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

17-47810043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810043
    reference: chr 17
allele count: 5
allele frequency: 4.364296562680027e-5
allele num: 114566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.158G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-581G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.528G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.236G>A
  hgvsp: ENSP00000421412.1:p.Cys79Tyr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.123G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10087G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.262G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.143G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.236G>A
  hgvsp: ENSP00000240364.2:p.Cys79Tyr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.365G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys79Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

17-47810046-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810046
    reference: chr 17
allele count: 1
allele frequency: 8.787037362482866e-6
allele num: 113804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.120T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-584T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.233T>C
  hgvsp: ENSP00000421412.1:p.Val78Ala
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.140T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.525T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.233T>C
  hgvsp: ENSP00000240364.2:p.Val78Ala
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10090T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.155T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.362T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.259T>C
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val78Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

17-47810047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810047
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810047
    reference: chr 17
allele count: 1
allele frequency: 8.839700864522744e-6
allele num: 113126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10091G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.154G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.232G>A
  hgvsp: ENSP00000421412.1:p.Val78Met
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.139G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.232G>A
  hgvsp: ENSP00000240364.2:p.Val78Met
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.524G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-585G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.258G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.361G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.119G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val78Met
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

17-47810048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810048
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810048
    reference: chr 17
allele count: 1
allele frequency: 8.841420285754704e-6
allele num: 113104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-586A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.231A>G
  hgvsp: ENST00000240364.2:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10092A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.153A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.118A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.523A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.231A>G
  hgvsp: ENST00000506156.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.138A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.257A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.360A>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser77Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-47810061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810061
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810061
    reference: chr 17
allele count: 1
allele frequency: 9.164558818138496e-6
allele num: 109116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.244C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.347C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.510C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.218C>T
  hgvsp: ENSP00000240364.2:p.Ala73Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.218C>T
  hgvsp: ENSP00000421412.1:p.Ala73Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.105C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.125C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-599C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.140C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10105C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala73Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

17-47810064-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810064
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810064
    reference: chr 17
allele count: 1
allele frequency: 9.24402373865296e-6
allele num: 108178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.241T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-602T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.137T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.122T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.507T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.215T>C
  hgvsp: ENSP00000421412.1:p.Val72Ala
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10108T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.344T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.102T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.215T>C
  hgvsp: ENSP00000240364.2:p.Val72Ala
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val72Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-47810065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810065
    reference: chr 17
allele count: 1
allele frequency: 9.280914726955489e-6
allele num: 107748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-603G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.214G>A
  hgvsp: ENSP00000421412.1:p.Val72Met
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.506G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.121G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.214G>A
  hgvsp: ENSP00000240364.2:p.Val72Met
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.343G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10109G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.136G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.240G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.101G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val72Met
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-47810066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810066
    reference: chr 17
allele count: 1
allele frequency: 9.339684318670028e-6
allele num: 107070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.213G>A
  hgvsp: ENST00000506156.1:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.100G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.505G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.213G>A
  hgvsp: ENST00000240364.2:c.213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.135G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-604G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.120G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.239G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.342G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10110G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser71Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/17-47810070-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810070
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810070
    reference: chr 17
allele count: 1
allele frequency: 9.53034461726136e-6
allele num: 104928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.501G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.235G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.131G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.116G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.209G>T
  hgvsp: ENSP00000421412.1:p.Cys70Phe
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.209G>T
  hgvsp: ENSP00000240364.2:p.Cys70Phe
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.96G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.338G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-608G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10114G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14452
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys70Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-47810072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810072
    reference: chr 17
allele count: 1
allele frequency: 9.647108761504178e-6
allele num: 103658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.114A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10116A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.336A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.233A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.207A>G
  hgvsp: ENST00000506156.1:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.94A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.207A>G
  hgvsp: ENST00000240364.2:c.207A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.499A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-610A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.129A>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro69Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

17-47810078-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810078
    reference: chr 17
allele count: 3
allele frequency: 2.966596127603188e-5
allele num: 101126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.330C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-616C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.493C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.123C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.108C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10122C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.201C>T
  hgvsp: ENST00000240364.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.88C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.201C>T
  hgvsp: ENST00000506156.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.227C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26114
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser67Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-47810091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810091
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810091
    reference: chr 17
allele count: 1
allele frequency: 1.045653219566263e-5
allele num: 95634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10135C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.214C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-9C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-9C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23885
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

17-47810096-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810096
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810096
    reference: chr 17
allele count: 1
allele frequency: 1.071397960058284e-5
allele num: 93336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.209G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10140G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-14G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-14G>C
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

17-47810102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810102
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810102
    reference: chr 17
allele count: 6
allele frequency: 6.740664180110546e-5
allele num: 89012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10146C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.203C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-20C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-20C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22822
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13663
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-47810104-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810104
    reference: chr 17
allele count: 2
allele frequency: 2.240645305848084e-5
allele num: 89260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10148T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.201T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-22T>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-22T>G
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-47810105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810105
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810105
    reference: chr 17
allele count: 8
allele frequency: 9.001305189252441e-5
allele num: 88876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.200G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10149G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-23G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-23G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-47810106-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810106
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810106
    reference: chr 17
allele count: 19
allele frequency: 2.152340386968145e-4
allele num: 88276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10150C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.199C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-24C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-24C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7698
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23321
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14300
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-47810107-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810107
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810107
    reference: chr 17
allele count: 1
allele frequency: 1.1361570623523e-5
allele num: 88016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.198G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-25G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10151G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-25G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-47810114-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810114
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810114
    reference: chr 17
allele count: 286
allele frequency: 3.406221714067934e-3
allele num: 83964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10158T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.191T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-32T>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-32T>C
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23855
  bin: 1.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 1.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 2
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

17-47810126-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810126
    reference: chr 17
allele count: 3
allele frequency: 4.011660560027814e-5
allele num: 74782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.179C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10170C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-44C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-44C>G
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19062
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5485
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

17-47810129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810129
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810129
    reference: chr 17
allele count: 1
allele frequency: 1.401227475268335e-5
allele num: 71366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10173C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.176C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-47C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-47C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

17-47810130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810130
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810130
    reference: chr 17
allele count: 2
allele frequency: 2.835994441450895e-5
allele num: 70522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10174C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.175C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-48C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-48C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20710
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19101
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

17-47810134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47810134
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47810134
    reference: chr 17
allele count: 2
allele frequency: 3.011413256241154e-5
allele num: 66414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000515240
  gene symbol: FAM117A
  hgvsc: ENST00000515240.1:n.84-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.326-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.83-10178G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.104-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-620-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.119-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.197-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514841
  gene symbol: FAM117A
  hgvsc: ENST00000514841.1:n.171G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.197-52G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.489-52G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21303
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18585
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14062
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-47841226-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841226
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 10
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24633G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24638G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25199G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.196+28G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.196+28G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24633G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1713G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25199G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16837
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3596
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-47841239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841239
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841239
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 10
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24620G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.196+15G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25186G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25186G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.196+15G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24620G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24625G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1700G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

17-47841303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841303
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841303
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 8
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.147C>T
  hgvsp: ENST00000506156.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24556C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24561C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.147C>T
  hgvsp: ENST00000240364.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25122C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25122C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24556C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1636C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10428
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9762
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro49Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-47841386-CGGCCCCTCCGCGCCCCGGCCCCCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841386
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841362
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 98
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsp: ENSP00000240364.2:p.Trp14_Ala21del
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsp: ENSP00000421412.1:p.Trp14_Ala21del
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Trp14_Ala21del
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: CGGCCCCTCCGCGCCCCGGCCCCCA
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-47841403-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841403
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841403
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 1430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25022C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24456C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1536C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25022C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24461C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.47C>A
  hgvsp: ENSP00000421412.1:p.Pro16Gln
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24456C>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.47C>A
  hgvsp: ENSP00000240364.2:p.Pro16Gln
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15163
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27971
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro16Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-47841404-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841404
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841404
    reference: chr 17
allele count: 1
allele frequency: 4.789272030651341e-4
allele num: 2088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.46C>G
  hgvsp: ENSP00000421412.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1535C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24455C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24455C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24460C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25021C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.46C>G
  hgvsp: ENSP00000240364.2:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25021C>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro16Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

17-47841412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841412
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841412
    reference: chr 17
allele count: 4
allele frequency: 7.027406886858749e-4
allele num: 5692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24452C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24447C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24447C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.38C>T
  hgvsp: ENSP00000240364.2:p.Ala13Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25013C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.38C>T
  hgvsp: ENSP00000421412.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25013C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1527C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27585
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala13Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

17-47841419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841419
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841419
    reference: chr 17
allele count: 1
allele frequency: 9.117432530999271e-5
allele num: 10968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+25006G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.31G>A
  hgvsp: ENSP00000421412.1:p.Gly11Arg
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24445G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24440G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24440G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1520G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.31G>A
  hgvsp: ENSP00000240364.2:p.Gly11Arg
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+25006G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly11Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-47841427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841427
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841427
    reference: chr 17
allele count: 1
allele frequency: 4.643819076808767e-5
allele num: 21534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24432G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24998G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24432G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.23G>A
  hgvsp: ENSP00000421412.1:p.Gly8Asp
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.23G>A
  hgvsp: ENSP00000240364.2:p.Gly8Asp
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24998G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1512G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24437G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly8Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-47841433-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841433
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841433
    reference: chr 17
allele count: 1
allele frequency: 3.093485120336571e-5
allele num: 32326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24431C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24992C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.17C>G
  hgvsp: ENSP00000240364.2:p.Ala6Gly
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.17C>G
  hgvsp: ENSP00000421412.1:p.Ala6Gly
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1506C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24426C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24992C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24426C>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27981
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala6Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-47841437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841437
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841437
    reference: chr 17
allele count: 1
allele frequency: 2.515090543259557e-5
allele num: 39760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.13G>A
  hgvsp: ENSP00000240364.2:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24422G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24422G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24427G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.13G>A
  hgvsp: ENSP00000421412.1:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1502G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24988G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24988G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala5Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-47841445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841445
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841445
    reference: chr 17
allele count: 1
allele frequency: 1.544067691927614e-5
allele num: 64764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24980C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24414C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24414C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24980C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.5C>T
  hgvsp: ENSP00000421412.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24419C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.5C>T
  hgvsp: ENSP00000240364.2:p.Ala2Val
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1494C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala2Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-47841445-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841445
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841445
    reference: chr 17
allele count: 1
allele frequency: 1.544067691927614e-5
allele num: 64764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.5C>G
  hgvsp: ENSP00000240364.2:p.Ala2Gly
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24419C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.5C>G
  hgvsp: ENSP00000421412.1:p.Ala2Gly
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24980C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24980C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24414C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24414C>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1494C>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala2Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-47841449-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841449
    reference: chr 17
allele count: 1
allele frequency: 1.371892663118038e-5
allele num: 72892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1490A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.1A>G
  hgvsp: ENSP00000421412.1:p.Met1?
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24976A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24410A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24976A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24410A>G
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.1A>G
  hgvsp: ENSP00000240364.2:p.Met1?
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24415A>G
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28469
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-47841451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841451
    reference: chr 17
allele count: 1
allele frequency: 1.339871908245572e-5
allele num: 74634
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-2C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1488C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24974C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24974C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24408C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24413C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24408C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-47841452-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841452
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841452
    reference: chr 17
allele count: 2
allele frequency: 2.642007926023778e-5
allele num: 75700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24407G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-3G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24412G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-3G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24973G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24407G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24973G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1487G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10714
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-47841459-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841459
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841459
    reference: chr 17
allele count: 66
allele frequency: 7.926785328240975e-4
allele num: 83262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24966C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1480C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24400C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-10C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24400C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24405C>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24966C>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31712
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-47841461-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
allele count: 187
allele frequency: 2.200155305080359e-3
allele num: 84994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24964G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24403G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-12G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24398G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-12G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24398G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1478G>T
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24964G>T
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 31765
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.75e1
  variant carriers: 184
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-47841461-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
allele count: 4
allele frequency: 4.706214556321623e-5
allele num: 84994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24964G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-12G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24964G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1478G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24398G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24403G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24398G>C
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-47841461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47841461
    reference: chr 17
allele count: 1
allele frequency: 1.176553639080406e-5
allele num: 84994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000505159
  gene symbol: FAM117A
  hgvsc: ENST00000505159.1:n.118+24964G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000465808
  ensembl transcript: ENST00000513602
  gene symbol: FAM117A
  hgvsc: ENST00000513602.1:c.-621+24398G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000240364
  ensembl transcript: ENST00000240364
  gene symbol: FAM117A
  hgvsc: ENST00000240364.2:c.-12G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000514018
  gene symbol: FAM117A
  hgvsc: ENST00000514018.1:n.488+24403G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000121104
  ensembl protein: ENSP00000421412
  ensembl transcript: ENST00000506156
  gene symbol: FAM117A
  hgvsc: ENST00000506156.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503855
  gene symbol: FAM117A
  hgvsc: ENST00000503855.1:n.82+24398G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000503720
  gene symbol: FAM117A
  hgvsc: ENST00000503720.1:n.325+1478G>A
  variant of: http://identifiers.org/hgnc/24179
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121104
  ensembl transcript: ENST00000509347
  gene symbol: FAM117A
  hgvsc: ENST00000509347.1:n.103+24964G>A
  variant of: http://identifiers.org/hgnc/24179
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

17-47841462-T-C
type: Variant
allele count: 4
allele frequency: 4.6455449224194e-5
allele num: 86104
alternate allele: C
canonical: true
consequence: 5' UTR
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 432
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.562e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

QD
type: SiteQuality
SIO_000300: 1.481e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 3.39228e5

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: -9.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

GenotypeQuality
all individuals: 2106
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.31528895391368e-4
allele num: 2734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.67e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

DP
type: SiteQuality
SIO_000300: 3.40123e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

VQSLOD
type: SiteQuality
SIO_000300: -8.185e-1

FS
type: SiteQuality
SIO_000300: 1.541e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

South Asian
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allele frequency: 1.30684788290643e-4
allele num: 15304
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.552264754276489e-5
allele num: 64422
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.220452848967405e-5
allele num: 64304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 1.30841e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

FS
type: SiteQuality
SIO_000300: 3.14e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.551494088807522e-5
allele num: 64454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

QD
type: SiteQuality
SIO_000300: 4.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.530877805333578e-5
allele num: 65322
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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African
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South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11188
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.816e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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Latino
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allele frequency: 2.671415850400712e-4
allele num: 11230
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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DP
type: SiteQuality
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 15884
num of homozygotes: 0

European (Finnish)
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African
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European (Non-Finnish)
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Latino
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Other
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East Asian
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
type: SiteQuality
SIO_000300: 1.469065e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 1275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.22975330176925e-5
allele num: 16052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: 4.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.489012e6

QD
type: SiteQuality
SIO_000300: 1.302e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

GenotypeQuality
all individuals: 1259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1083
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variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.731413001167769e-5
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 3.146e0

QD
type: SiteQuality
SIO_000300: 1.245e1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.167e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.493715e6

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

GenotypeQuality
all individuals: 1083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16104
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.493715e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.245e1

FS
type: SiteQuality
SIO_000300: 3.146e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.167e0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1063
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47380
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GenotypeQuality
all individuals: 103
bin: 4.25e1
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GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
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variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.491620111731844e-4
allele num: 8592
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

DP
type: SiteQuality
SIO_000300: 1.501203e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
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variant carriers: 1

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 5379
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GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 191
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.423e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.516743e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.238e0

GenotypeQuality
all individuals: 1964
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5415
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 1356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48107
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variant carriers: 0

GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.475842891901286e-4
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.522376e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1336
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 180
bin: 3.25e1
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 571
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GenotypeQuality
all individuals: 1130
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 5404
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 203
bin: 8.75e1
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GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1969
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.05234673321507e-4
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.276e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.235e0

DP
type: SiteQuality
SIO_000300: 1.525537e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 638
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GenotypeQuality
all individuals: 156
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 47640
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variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.502e0

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 6.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.524819e6

GenotypeQuality
all individuals: 5332
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.103515625e-5
allele num: 16384
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: 2.8e-2

MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.042010160313935e-5
allele num: 65746
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Latino
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allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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African
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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African
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.057262527133205e-5
allele num: 65418
num of homozygotes: 0

Other
type: Population
allele count: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
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SIO_000300: -3.95e-1

BaseQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
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DP
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SIO_000300: 1.497388e6

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 4.0e-4

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele num: 11358
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Other
type: Population
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European (Non-Finnish)
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allele count: 1
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allele num: 65378
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African
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16056
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.532285250222181e-5
allele num: 65262
num of homozygotes: 0

East Asian
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European (Finnish)
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Latino
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African
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Other
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South Asian
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MQRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 5.129257283545343e-4
allele num: 9748
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQ
type: SiteQuality
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QD
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 10830
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East Asian
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 62698
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South Asian
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QD
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.594998086002297e-5
allele num: 62696
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

FS
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 60634
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East Asian
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European (Finnish)
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African
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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FS
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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East Asian
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.712387410527758e-5
allele num: 58398
num of homozygotes: 0

East Asian
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Latino
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Other
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: 2.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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FS
type: SiteQuality
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4656
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 2
allele frequency: 1.406271972999578e-4
allele num: 14222
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.77518994532415e-5
allele num: 56332
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53342
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 7.276961141027506e-5
allele num: 13742
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Other
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.598e0

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4182
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South Asian
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allele count: 1
allele frequency: 7.417297136923305e-5
allele num: 13482
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
type: Population
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QD
type: SiteQuality
SIO_000300: 1.815e1

MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.037738e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.01118217288122e-5
allele num: 49722
num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele frequency: 1.273560876209883e-4
allele num: 7852
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South Asian
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European (Finnish)
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East Asian
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MQ
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 7744
num of homozygotes: 0

South Asian
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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allele count: 1
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allele num: 49944
num of homozygotes: 0

Latino
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

South Asian
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allele num: 13054
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African
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East Asian
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Latino
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allele frequency: 1.279754287176862e-4
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European (Non-Finnish)
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allele frequency: 4.023982938312342e-5
allele num: 49702
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European (Finnish)
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Other
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allele num: 658
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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FS
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.048419092344439e-5
allele num: 49402
num of homozygotes: 0

East Asian
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allele count: 17
allele frequency: 2.847571189279732e-3
allele num: 5970
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.072e1

FS
type: SiteQuality
SIO_000300: 8.43e-1

ClippingRankSum
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 1.57e0

BaseQRankSum
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SIO_000300: -2.174e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

DP
type: SiteQuality
SIO_000300: 9.576e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49246
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.602811035918792e-4
allele num: 3842
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.296e1

InbreedingCoeff
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SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 7.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 9.50035e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 6
allele frequency: 8.167710318540703e-4
allele num: 7346
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.17359568390987e-4
allele num: 12604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 258
allele frequency: 5.478870248460395e-3
allele num: 47090
num of homozygotes: 1

Latino
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allele count: 16
allele frequency: 2.217294900221729e-3
allele num: 7216
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.768549280177187e-4
allele num: 3612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 1.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

DP
type: SiteQuality
SIO_000300: 8.97232e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6710
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.550586634926033e-4
allele num: 11762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.34038e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

FS
type: SiteQuality
SIO_000300: 3.324e0

VQSLOD
type: SiteQuality
SIO_000300: 7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.46e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.490535963339311e-5
allele num: 40152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.452e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.533e-1

QD
type: SiteQuality
SIO_000300: 1.056e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.883e0

DP
type: SiteQuality
SIO_000300: 8.24995e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.04261005496445e-5
allele num: 39662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.347e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 2.462e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.23293e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.833852924995415e-4
allele num: 10906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2646
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
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Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
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FS
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QD
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
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South Asian
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East Asian
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Latino
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Other
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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allele frequency: NaN
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East Asian
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European (Non-Finnish)
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African
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Other
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allele frequency: NaN
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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DP
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 5.5e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele num: 136
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

DP
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SIO_000300: 1.96792e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.223990208078335e-3
allele num: 3268
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Other
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Latino
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South Asian
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African
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European (Finnish)
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VQSLOD
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Non-Finnish)
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African
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Other
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East Asian
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European (Finnish)
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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Other
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African
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European (Non-Finnish)
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FS
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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East Asian
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 5.95253e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.289324394017535e-4
allele num: 7756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.10217e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 3059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.996007984031936e-4
allele num: 5010
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 8.10217e5

GenotypeQuality
all individuals: 1109
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 464
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GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.317711954758263e-5
allele num: 43146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 2.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

QD
type: SiteQuality
SIO_000300: 1.612e1

DP
type: SiteQuality
SIO_000300: 8.79746e5

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11105
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GenotypeQuality
all individuals: 710
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.273243919072516e-5
allele num: 43990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.928e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 8.98251e5

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1070
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GenotypeQuality
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GenotypeQuality
all individuals: 25498
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 407
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.489539373260304e-5
allele num: 44548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.08551e5

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.308e0

FS
type: SiteQuality
SIO_000300: 3.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

QD
type: SiteQuality
SIO_000300: 1.38e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.986e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 28630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 245
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GenotypeQuality
all individuals: 4371
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GenotypeQuality
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GenotypeQuality
all individuals: 430
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1285
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variant carriers: 1

GenotypeQuality
all individuals: 1018
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GenotypeQuality
all individuals: 1508
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.010858636637844e-4
allele num: 9946
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 8.28047921071177e-3
allele num: 5676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.499238401053888e-4
allele num: 48582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 9.85835e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1550
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.0e-3
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.423654871546292e-4
allele num: 49512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.718213058419244e-4
allele num: 5820
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

East Asian
type: Population
allele count: 171
allele frequency: 2.309562398703404e-2
allele num: 7404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.410835214446952e-4
allele num: 7088
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.008007e6

FS
type: SiteQuality
SIO_000300: 2.401e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

GenotypeQuality
all individuals: 1550
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4545
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.05913717886573e-5
allele num: 49512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 2.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.008007e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 317
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variant carriers: 0

GenotypeQuality
all individuals: 4545
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 596
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GenotypeQuality
all individuals: 6763
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 345
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 1.008007e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.401e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.349e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2