17-73235922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235922
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235922
    reference: chr 17
allele count: 1
allele frequency: 8.39630562552477e-6
allele num: 119100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1165A>G
  hgvsp: ENSP00000463288.1:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1531A>G
  hgvsp: ENSP00000245541.6:p.Ser511Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1364A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.610A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1165A>G
  hgvsp: ENSP00000446421.1:p.Ser389Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1490A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1315A>G
  hgvsp: ENSP00000462081.1:p.Ser439Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1432A>G
  hgvsp: ENSP00000326575.7:p.Ser478Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1315A>G
  hgvsp: ENSP00000462629.1:p.Ser439Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2838A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.364A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser511Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

17-73235924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235924
    reference: chr 17
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1163A>G
  hgvsp: ENSP00000463288.1:p.Asn388Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.362A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1163A>G
  hgvsp: ENSP00000446421.1:p.Asn388Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1313A>G
  hgvsp: ENSP00000462629.1:p.Asn438Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1362A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.608A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1488A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2836A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1313A>G
  hgvsp: ENSP00000462081.1:p.Asn438Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1430A>G
  hgvsp: ENSP00000326575.7:p.Asn477Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1529A>G
  hgvsp: ENSP00000245541.6:p.Asn510Ser
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn510Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-73235931-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235931
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235931
    reference: chr 17
allele count: 2
allele frequency: 1.679994624017203e-5
allele num: 119048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1423T>C
  hgvsp: ENST00000351904.7:c.1423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2829T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1481T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.601T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1522T>C
  hgvsp: ENST00000245541.6:c.1522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1306T>C
  hgvsp: ENST00000582486.1:c.1306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1355T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1156T>C
  hgvsp: ENST00000538886.1:c.1156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1156T>C
  hgvsp: ENST00000578348.1:c.1156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1306T>C
  hgvsp: ENST00000582717.1:c.1306T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.355T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu508Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-73235932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235932
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235932
    reference: chr 17
allele count: 114
allele frequency: 9.575165045608023e-4
allele num: 119058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.600G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1354G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1480G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1155G>A
  hgvsp: ENST00000578348.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1521G>A
  hgvsp: ENST00000245541.6:c.1521G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1305G>A
  hgvsp: ENST00000582486.1:c.1305G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1422G>A
  hgvsp: ENST00000351904.7:c.1422G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1155G>A
  hgvsp: ENST00000538886.1:c.1155G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2828G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.354G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1305G>A
  hgvsp: ENST00000582717.1:c.1305G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10950
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13086
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 31508
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
hgvs: p.Ala507Ala
num of homozygotes: 4
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-73235933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235933
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235933
    reference: chr 17
allele count: 4
allele frequency: 3.360553819269415e-5
allele num: 119028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1304C>T
  hgvsp: ENSP00000462629.1:p.Ala435Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1479C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1353C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1421C>T
  hgvsp: ENSP00000326575.7:p.Ala474Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.599C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1154C>T
  hgvsp: ENSP00000463288.1:p.Ala385Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1154C>T
  hgvsp: ENSP00000446421.1:p.Ala385Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1304C>T
  hgvsp: ENSP00000462081.1:p.Ala435Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.353C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2827C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1520C>T
  hgvsp: ENSP00000245541.6:p.Ala507Val
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala507Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-73235933-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235933
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235933
    reference: chr 17
allele count: 1
allele frequency: 8.401384548173538e-6
allele num: 119028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1154C>G
  hgvsp: ENSP00000463288.1:p.Ala385Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.599C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1304C>G
  hgvsp: ENSP00000462081.1:p.Ala435Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1304C>G
  hgvsp: ENSP00000462629.1:p.Ala435Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1479C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1353C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1520C>G
  hgvsp: ENSP00000245541.6:p.Ala507Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1421C>G
  hgvsp: ENSP00000326575.7:p.Ala474Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2827C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.353C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1154C>G
  hgvsp: ENSP00000446421.1:p.Ala385Gly
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala507Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-73235934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235934
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235934
    reference: chr 17
allele count: 5
allele frequency: 4.199492701281685e-5
allele num: 119062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2826G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1303G>A
  hgvsp: ENSP00000462081.1:p.Ala435Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.598G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1303G>A
  hgvsp: ENSP00000462629.1:p.Ala435Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.352G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1420G>A
  hgvsp: ENSP00000326575.7:p.Ala474Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1519G>A
  hgvsp: ENSP00000245541.6:p.Ala507Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1153G>A
  hgvsp: ENSP00000463288.1:p.Ala385Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1153G>A
  hgvsp: ENSP00000446421.1:p.Ala385Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1352G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1478G>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31533
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala507Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-73235938-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235938
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235938
    reference: chr 17
allele count: 152
allele frequency: 1.277654495326474e-3
allele num: 118968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.594C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1299C>T
  hgvsp: ENST00000582486.1:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1149C>T
  hgvsp: ENST00000578348.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1474C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1416C>T
  hgvsp: ENST00000351904.7:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.348C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1299C>T
  hgvsp: ENST00000582717.1:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1348C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1515C>T
  hgvsp: ENST00000245541.6:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2822C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1149C>T
  hgvsp: ENST00000538886.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 31459
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11001
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Gly505Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

17-73235942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235942
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235942
    reference: chr 17
allele count: 2
allele frequency: 1.68177460856696e-5
allele num: 118922
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1511A>G
  hgvsp: ENSP00000245541.6:p.His504Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.344A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1412A>G
  hgvsp: ENSP00000326575.7:p.His471Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2818A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1295A>G
  hgvsp: ENSP00000462081.1:p.His432Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1145A>G
  hgvsp: ENSP00000463288.1:p.His382Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.590A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1344A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1470A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1145A>G
  hgvsp: ENSP00000446421.1:p.His382Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1295A>G
  hgvsp: ENSP00000462629.1:p.His432Arg
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12973
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His504Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

17-73235943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235943
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235943
    reference: chr 17
allele count: 1
allele frequency: 8.414675193537529e-6
allele num: 118840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.343C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.589C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1510C>T
  hgvsp: ENSP00000245541.6:p.His504Tyr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1294C>T
  hgvsp: ENSP00000462629.1:p.His432Tyr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1294C>T
  hgvsp: ENSP00000462081.1:p.His432Tyr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1411C>T
  hgvsp: ENSP00000326575.7:p.His471Tyr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1469C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1343C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1144C>T
  hgvsp: ENSP00000463288.1:p.His382Tyr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2817C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1144C>T
  hgvsp: ENSP00000446421.1:p.His382Tyr
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His504Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-73235944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235944
    reference: chr 17
allele count: 1
allele frequency: 8.413542437908056e-6
allele num: 118856
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1509C>T
  hgvsp: ENST00000245541.6:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1293C>T
  hgvsp: ENST00000582486.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2816C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1342C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.342C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1143C>T
  hgvsp: ENST00000578348.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1468C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1143C>T
  hgvsp: ENST00000538886.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1293C>T
  hgvsp: ENST00000582717.1:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1410C>T
  hgvsp: ENST00000351904.7:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.588C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His503His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

17-73235951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235951
    reference: chr 17
allele count: 25
allele frequency: 2.123827647138779e-4
allele num: 117712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1136C>T
  hgvsp: ENSP00000446421.1:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.581C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1403C>T
  hgvsp: ENSP00000326575.7:p.Pro468Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1335C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1461C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1502C>T
  hgvsp: ENSP00000245541.6:p.Pro501Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1136C>T
  hgvsp: ENSP00000463288.1:p.Pro379Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1286C>T
  hgvsp: ENSP00000462629.1:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1286C>T
  hgvsp: ENSP00000462081.1:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.335C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2809C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30745
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12418
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro501Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

17-73235952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235952
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235952
    reference: chr 17
allele count: 1
allele frequency: 8.495310588555118e-6
allele num: 117712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.334C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1285C>T
  hgvsp: ENSP00000462081.1:p.Pro429Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1501C>T
  hgvsp: ENSP00000245541.6:p.Pro501Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1135C>T
  hgvsp: ENSP00000463288.1:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1285C>T
  hgvsp: ENSP00000462629.1:p.Pro429Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1135C>T
  hgvsp: ENSP00000446421.1:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1334C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1460C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1402C>T
  hgvsp: ENSP00000326575.7:p.Pro468Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2808C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.580C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30760
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro501Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

17-73235958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235958
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235958
    reference: chr 17
allele count: 3
allele frequency: 2.576080236312427e-5
allele num: 116456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1129G>A
  hgvsp: ENSP00000463288.1:p.Ala377Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2802G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1279G>A
  hgvsp: ENSP00000462629.1:p.Ala427Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1454G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1495G>A
  hgvsp: ENSP00000245541.6:p.Ala499Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1129G>A
  hgvsp: ENSP00000446421.1:p.Ala377Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1396G>A
  hgvsp: ENSP00000326575.7:p.Ala466Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1279G>A
  hgvsp: ENSP00000462081.1:p.Ala427Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1328G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.574G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.328G>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29952
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala499Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-73235959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235959
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235959
    reference: chr 17
allele count: 2
allele frequency: 1.721496324605347e-5
allele num: 116178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1395C>T
  hgvsp: ENST00000351904.7:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1128C>T
  hgvsp: ENST00000578348.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1494C>T
  hgvsp: ENST00000245541.6:c.1494C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.573C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.327C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1453C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1327C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1128C>T
  hgvsp: ENST00000538886.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1278C>T
  hgvsp: ENST00000582486.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1278C>T
  hgvsp: ENST00000582717.1:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2801C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro498Pro
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-73235970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235970
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235970
    reference: chr 17
allele count: 2
allele frequency: 1.803003804338027e-5
allele num: 110926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.562A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2790A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1442A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1117A>G
  hgvsp: ENSP00000446421.1:p.Lys373Glu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1267A>G
  hgvsp: ENSP00000462081.1:p.Lys423Glu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1384A>G
  hgvsp: ENSP00000326575.7:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1117A>G
  hgvsp: ENSP00000463288.1:p.Lys373Glu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1267A>G
  hgvsp: ENSP00000462629.1:p.Lys423Glu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.316A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1316A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1483A>G
  hgvsp: ENSP00000245541.6:p.Lys495Glu
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys495Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

17-73235980-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235980
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235980
    reference: chr 17
allele count: 1
allele frequency: 9.781290347822685e-6
allele num: 102236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.552C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1473C>A
  hgvsp: ENST00000245541.6:c.1473C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1107C>A
  hgvsp: ENST00000578348.1:c.1107C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1306C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1257C>A
  hgvsp: ENST00000582717.1:c.1257C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1257C>A
  hgvsp: ENST00000582486.1:c.1257C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1374C>A
  hgvsp: ENST00000351904.7:c.1374C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1432C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1107C>A
  hgvsp: ENST00000538886.1:c.1107C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2780C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.306C>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala491Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-73235987-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235987
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235987
    reference: chr 17
allele count: 1
allele frequency: 1.056055421788535e-5
allele num: 94692
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1466C>A
  hgvsp: ENSP00000245541.6:p.Ala489Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1100C>A
  hgvsp: ENSP00000446421.1:p.Ala367Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1425C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1250C>A
  hgvsp: ENSP00000462081.1:p.Ala417Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1100C>A
  hgvsp: ENSP00000463288.1:p.Ala367Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.545C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1367C>A
  hgvsp: ENSP00000326575.7:p.Ala456Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1250C>A
  hgvsp: ENSP00000462629.1:p.Ala417Asp
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.299C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2773C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1299C>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14950
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala489Asp
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-73235994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235994
    reference: chr 17
allele count: 1
allele frequency: 1.171591255242871e-5
allele num: 85354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2766G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1093G>A
  hgvsp: ENSP00000446421.1:p.Gly365Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1243G>A
  hgvsp: ENSP00000462629.1:p.Gly415Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1418G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1243G>A
  hgvsp: ENSP00000462081.1:p.Gly415Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.538G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1093G>A
  hgvsp: ENSP00000463288.1:p.Gly365Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.292G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1360G>A
  hgvsp: ENSP00000326575.7:p.Gly454Arg
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1292G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1459G>A
  hgvsp: ENSP00000245541.6:p.Gly487Arg
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly487Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

17-73235995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235995
    reference: chr 17
allele count: 2
allele frequency: 2.342688469287354e-5
allele num: 85372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.291T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1242T>C
  hgvsp: ENST00000582486.1:c.1242T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1092T>C
  hgvsp: ENST00000578348.1:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1359T>C
  hgvsp: ENST00000351904.7:c.1359T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2765T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1092T>C
  hgvsp: ENST00000538886.1:c.1092T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1417T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1458T>C
  hgvsp: ENST00000245541.6:c.1458T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1291T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.537T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1242T>C
  hgvsp: ENST00000582717.1:c.1242T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr486Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-73235996-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235996
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235996
    reference: chr 17
allele count: 2
allele frequency: 2.348465277940866e-5
allele num: 85162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1241C>T
  hgvsp: ENSP00000462081.1:p.Thr414Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1091C>T
  hgvsp: ENSP00000446421.1:p.Thr364Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2764C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1241C>T
  hgvsp: ENSP00000462629.1:p.Thr414Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1457C>T
  hgvsp: ENSP00000245541.6:p.Thr486Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1091C>T
  hgvsp: ENSP00000463288.1:p.Thr364Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1416C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.536C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1358C>T
  hgvsp: ENSP00000326575.7:p.Thr453Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.290C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1290C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr486Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-73235996-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235996
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235996
    reference: chr 17
allele count: 1
allele frequency: 1.174232638970433e-5
allele num: 85162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1241C>G
  hgvsp: ENSP00000462081.1:p.Thr414Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1457C>G
  hgvsp: ENSP00000245541.6:p.Thr486Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2764C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1091C>G
  hgvsp: ENSP00000463288.1:p.Thr364Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1290C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1241C>G
  hgvsp: ENSP00000462629.1:p.Thr414Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.536C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1416C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.290C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1091C>G
  hgvsp: ENSP00000446421.1:p.Thr364Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1358C>G
  hgvsp: ENSP00000326575.7:p.Thr453Ser
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr486Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-73235998-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235998
    reference: chr 17
allele count: 3
allele frequency: 3.612020805239838e-5
allele num: 83056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1239T>C
  hgvsp: ENST00000582717.1:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1089T>C
  hgvsp: ENST00000578348.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1414T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1455T>C
  hgvsp: ENST00000245541.6:c.1455T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1239T>C
  hgvsp: ENST00000582486.1:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2762T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1288T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1089T>C
  hgvsp: ENST00000538886.1:c.1089T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.288T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1356T>C
  hgvsp: ENST00000351904.7:c.1356T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.534T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser485Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-73235999-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73235999
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235999
    reference: chr 17
allele count: 1
allele frequency: 1.241958319878785e-5
allele num: 80518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2761C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1355C>G
  hgvsp: ENSP00000326575.7:p.Ser452Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1088C>G
  hgvsp: ENSP00000446421.1:p.Ser363Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1287C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1238C>G
  hgvsp: ENSP00000462081.1:p.Ser413Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1454C>G
  hgvsp: ENSP00000245541.6:p.Ser485Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1088C>G
  hgvsp: ENSP00000463288.1:p.Ser363Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1238C>G
  hgvsp: ENSP00000462629.1:p.Ser413Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.533C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.287C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1413C>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser485Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-73236001-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236001
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236001
    reference: chr 17
allele count: 1
allele frequency: 1.257134236793805e-5
allele num: 79546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1086T>G
  hgvsp: ENSP00000463288.1:p.Phe362Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1452T>G
  hgvsp: ENSP00000245541.6:p.Phe484Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1285T>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1236T>G
  hgvsp: ENSP00000462081.1:p.Phe412Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1236T>G
  hgvsp: ENSP00000462629.1:p.Phe412Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1086T>G
  hgvsp: ENSP00000446421.1:p.Phe362Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1353T>G
  hgvsp: ENSP00000326575.7:p.Phe451Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2759T>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.285T>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1411T>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.531T>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe484Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-73236001-AAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236001
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73235998
    reference: chr 17
allele count: 1
allele frequency: 1.257134236793805e-5
allele num: 79546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1083_1085delGTT
  hgvsp: ENSP00000446421.1:p.Leu361del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1233_1235delGTT
  hgvsp: ENSP00000462629.1:p.Leu411del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1282_*1284delGTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1233_1235delGTT
  hgvsp: ENSP00000462081.1:p.Leu411del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.528_530delGTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1083_1085delGTT
  hgvsp: ENSP00000463288.1:p.Leu361del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1449_1451delGTT
  hgvsp: ENSP00000245541.6:p.Leu483del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1350_1352delGTT
  hgvsp: ENSP00000326575.7:p.Leu450del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1408_*1410delGTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.282_284delGTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2756_2758delGTT
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu483del
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: AAAC
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

17-73236004-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236004
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236001
    reference: chr 17
allele count: 1
allele frequency: 1.368475791663245e-5
allele num: 73074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1230_1232delCTT
  hgvsp: ENSP00000462081.1:p.Leu411del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1446_1448delCTT
  hgvsp: ENSP00000245541.6:p.Leu483del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.279_281delCTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1347_1349delCTT
  hgvsp: ENSP00000326575.7:p.Leu450del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1080_1082delCTT
  hgvsp: ENSP00000463288.1:p.Leu361del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1405_*1407delCTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1230_1232delCTT
  hgvsp: ENSP00000462629.1:p.Leu411del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.525_527delCTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1279_*1281delCTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1080_1082delCTT
  hgvsp: ENSP00000446421.1:p.Leu361del
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2753_2755delCTT
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu483del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: CAAG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-73236005-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236005
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236005
    reference: chr 17
allele count: 15
allele frequency: 2.043485368644761e-4
allele num: 73404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1349T>C
  hgvsp: ENSP00000326575.7:p.Leu450Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1082T>C
  hgvsp: ENSP00000463288.1:p.Leu361Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.527T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1232T>C
  hgvsp: ENSP00000462629.1:p.Leu411Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1448T>C
  hgvsp: ENSP00000245541.6:p.Leu483Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1281T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1232T>C
  hgvsp: ENSP00000462081.1:p.Leu411Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.281T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2755T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1082T>C
  hgvsp: ENSP00000446421.1:p.Leu361Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1407T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18873
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu483Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-73236010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236010
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236010
    reference: chr 17
allele count: 11
allele frequency: 1.683089540363547e-4
allele num: 65356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1443C>T
  hgvsp: ENST00000245541.6:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1227C>T
  hgvsp: ENST00000582717.1:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1276C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1077C>T
  hgvsp: ENST00000578348.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1402C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1344C>T
  hgvsp: ENST00000351904.7:c.1344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1227C>T
  hgvsp: ENST00000582486.1:c.1227C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.276C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1077C>T
  hgvsp: ENST00000538886.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.522C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2750C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21143
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser481Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-73236014-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236014
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236014
    reference: chr 17
allele count: 2
allele frequency: 3.381005511038983e-5
allele num: 59154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1073G>C
  hgvsp: ENSP00000446421.1:p.Gly358Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.518G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1340G>C
  hgvsp: ENSP00000326575.7:p.Gly447Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1272G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2746G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1073G>C
  hgvsp: ENSP00000463288.1:p.Gly358Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1223G>C
  hgvsp: ENSP00000462081.1:p.Gly408Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1439G>C
  hgvsp: ENSP00000245541.6:p.Gly480Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1223G>C
  hgvsp: ENSP00000462629.1:p.Gly408Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1398G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.272G>C
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly480Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-73236016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236016
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236016
    reference: chr 17
allele count: 2
allele frequency: 3.596863534997482e-5
allele num: 55604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1338G>A
  hgvsp: ENST00000351904.7:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.270G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1270G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1221G>A
  hgvsp: ENST00000582486.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1221G>A
  hgvsp: ENST00000582717.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1071G>A
  hgvsp: ENST00000538886.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1437G>A
  hgvsp: ENST00000245541.6:c.1437G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1396G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1071G>A
  hgvsp: ENST00000578348.1:c.1071G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.516G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2744G>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15887
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala479Ala
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-73236017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236017
    reference: chr 17
allele count: 1
allele frequency: 1.943710153941844e-5
allele num: 51448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1070C>T
  hgvsp: ENSP00000446421.1:p.Ala357Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1070C>T
  hgvsp: ENSP00000463288.1:p.Ala357Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1337C>T
  hgvsp: ENSP00000326575.7:p.Ala446Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1436C>T
  hgvsp: ENSP00000245541.6:p.Ala479Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1220C>T
  hgvsp: ENSP00000462081.1:p.Ala407Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1220C>T
  hgvsp: ENSP00000462629.1:p.Ala407Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2743C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.515C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1395C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.269C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1269C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23341
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala479Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-73236021-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236022
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 49516
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.264dupC
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1065dupC
  hgvsp: ENSP00000463288.1:p.Ser356GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1390dupC
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1264dupC
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1215dupC
  hgvsp: ENSP00000462081.1:p.Ser406GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1431dupC
  hgvsp: ENSP00000245541.6:p.Ser478GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1215dupC
  hgvsp: ENSP00000462629.1:p.Ser406GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.510dupC
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1332dupC
  hgvsp: ENSP00000326575.7:p.Ser445GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1065dupC
  hgvsp: ENSP00000446421.1:p.Ser356GlnfsTer20
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2738dupC
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23971
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13732
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser478GlnfsTer20
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-73236025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236025
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236025
    reference: chr 17
allele count: 4
allele frequency: 8.724861492823801e-5
allele num: 45846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2735C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1212C>T
  hgvsp: ENST00000582486.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1062C>T
  hgvsp: ENST00000578348.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1212C>T
  hgvsp: ENST00000582717.1:c.1212C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1261C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1329C>T
  hgvsp: ENST00000351904.7:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1062C>T
  hgvsp: ENST00000538886.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1428C>T
  hgvsp: ENST00000245541.6:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.261C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.507C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1387C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24006
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala476Ala
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

17-73236026-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236026
    reference: chr 17
allele count: 11
allele frequency: 2.44140625e-4
allele num: 45056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1211C>T
  hgvsp: ENSP00000462629.1:p.Ala404Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1328C>T
  hgvsp: ENSP00000326575.7:p.Ala443Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1386C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2734C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1061C>T
  hgvsp: ENSP00000463288.1:p.Ala354Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1260C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.260C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1061C>T
  hgvsp: ENSP00000446421.1:p.Ala354Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1427C>T
  hgvsp: ENSP00000245541.6:p.Ala476Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.506C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1211C>T
  hgvsp: ENSP00000462081.1:p.Ala404Val
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23976
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala476Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-73236033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236033
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236033
    reference: chr 17
allele count: 4
allele frequency: 1.015279963449921e-4
allele num: 39398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1420G>A
  hgvsp: ENSP00000245541.6:p.Val474Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1204G>A
  hgvsp: ENSP00000462629.1:p.Val402Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.253G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1253G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1379G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2727G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.499G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1204G>A
  hgvsp: ENSP00000462081.1:p.Val402Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1054G>A
  hgvsp: ENSP00000463288.1:p.Val352Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1054G>A
  hgvsp: ENSP00000446421.1:p.Val352Ile
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1321G>A
  hgvsp: ENSP00000326575.7:p.Val441Ile
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22919
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16528
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val474Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-73236042-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236042
    reference: chr 17
allele count: 1
allele frequency: 3.050454517723141e-5
allele num: 32782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1045C>G
  hgvsp: ENSP00000463288.1:p.Pro349Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1411C>G
  hgvsp: ENSP00000245541.6:p.Pro471Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1244C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.244C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1195C>G
  hgvsp: ENSP00000462629.1:p.Pro399Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1195C>G
  hgvsp: ENSP00000462081.1:p.Pro399Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1045C>G
  hgvsp: ENSP00000446421.1:p.Pro349Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1312C>G
  hgvsp: ENSP00000326575.7:p.Pro438Ala
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.490C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1370C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2718C>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro471Ala
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

17-73236053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236053
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236053
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 28316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1301C>T
  hgvsp: ENSP00000326575.7:p.Ala434Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1034C>T
  hgvsp: ENSP00000463288.1:p.Ala345Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1034C>T
  hgvsp: ENSP00000446421.1:p.Ala345Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1184C>T
  hgvsp: ENSP00000462081.1:p.Ala395Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1359C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1233C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1400C>T
  hgvsp: ENSP00000245541.6:p.Ala467Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2707C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1184C>T
  hgvsp: ENSP00000462629.1:p.Ala395Val
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.479C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.233C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25145
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala467Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-73236063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236063
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236063
    reference: chr 17
allele count: 7
allele frequency: 2.796197171846289e-4
allele num: 25034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2697C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1390C>T
  hgvsp: ENSP00000245541.6:p.Pro464Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.223C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1024C>T
  hgvsp: ENSP00000463288.1:p.Pro342Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1223C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1349C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1291C>T
  hgvsp: ENSP00000326575.7:p.Pro431Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1174C>T
  hgvsp: ENSP00000462629.1:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1174C>T
  hgvsp: ENSP00000462081.1:p.Pro392Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1024C>T
  hgvsp: ENSP00000446421.1:p.Pro342Ser
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.469C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28606
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16241
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro464Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-73236066-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236066
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 24088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1288C>A
  hgvsp: ENSP00000326575.7:p.Pro430Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1021C>A
  hgvsp: ENSP00000463288.1:p.Pro341Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1171C>A
  hgvsp: ENSP00000462081.1:p.Pro391Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1171C>A
  hgvsp: ENSP00000462629.1:p.Pro391Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.220C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1021C>A
  hgvsp: ENSP00000446421.1:p.Pro341Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1346C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1220C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.466C>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1387C>A
  hgvsp: ENSP00000245541.6:p.Pro463Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2694C>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15623
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro463Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-73236067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236067
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236067
    reference: chr 17
allele count: 6
allele frequency: 2.533569799847986e-4
allele num: 23682
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1386G>A
  hgvsp: ENST00000245541.6:c.1386G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1345G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.465G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1170G>A
  hgvsp: ENST00000582486.1:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1219G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2693G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1020G>A
  hgvsp: ENST00000578348.1:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1020G>A
  hgvsp: ENST00000538886.1:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1287G>A
  hgvsp: ENST00000351904.7:c.1287G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.219G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1170G>A
  hgvsp: ENST00000582717.1:c.1170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29625
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro462Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-73236068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236068
    reference: chr 17
allele count: 1
allele frequency: 4.24881033310673e-5
allele num: 23536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.218C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1019C>T
  hgvsp: ENSP00000463288.1:p.Pro340Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1019C>T
  hgvsp: ENSP00000446421.1:p.Pro340Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2692C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1169C>T
  hgvsp: ENSP00000462629.1:p.Pro390Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1286C>T
  hgvsp: ENSP00000326575.7:p.Pro429Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1344C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1169C>T
  hgvsp: ENSP00000462081.1:p.Pro390Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1385C>T
  hgvsp: ENSP00000245541.6:p.Pro462Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1218C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.464C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro462Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

17-73236087-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236087
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236087
    reference: chr 17
allele count: 3
allele frequency: 1.415227851684121e-4
allele num: 21198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.1000A>G
  hgvsp: ENSP00000463288.1:p.Ser334Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1150A>G
  hgvsp: ENSP00000462081.1:p.Ser384Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1366A>G
  hgvsp: ENSP00000245541.6:p.Ser456Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1267A>G
  hgvsp: ENSP00000326575.7:p.Ser423Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.445A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.1000A>G
  hgvsp: ENSP00000446421.1:p.Ser334Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1150A>G
  hgvsp: ENSP00000462629.1:p.Ser384Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.199A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1325A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2673A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1199A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32778
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12548
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser456Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

17-73236088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236088
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236088
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 21062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1266C>T
  hgvsp: ENST00000351904.7:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.198C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1324C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.999C>T
  hgvsp: ENST00000538886.1:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.444C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1198C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.999C>T
  hgvsp: ENST00000578348.1:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2672C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1149C>T
  hgvsp: ENST00000582486.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1149C>T
  hgvsp: ENST00000582717.1:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1365C>T
  hgvsp: ENST00000245541.6:c.1365C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser455Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

17-73236098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236098
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236098
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 20554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1139C>T
  hgvsp: ENSP00000462629.1:p.Pro380Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1314C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2662C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1139C>T
  hgvsp: ENSP00000462081.1:p.Pro380Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.188C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1355C>T
  hgvsp: ENSP00000245541.6:p.Pro452Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.989C>T
  hgvsp: ENSP00000463288.1:p.Pro330Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1256C>T
  hgvsp: ENSP00000326575.7:p.Pro419Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1188C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.434C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.989C>T
  hgvsp: ENSP00000446421.1:p.Pro330Leu
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11742
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro452Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-73236103-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236103
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236103
    reference: chr 17
allele count: 1
allele frequency: 4.903402961655389e-5
allele num: 20394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1251A>G
  hgvsp: ENST00000351904.7:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1350A>G
  hgvsp: ENST00000245541.6:c.1350A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.984A>G
  hgvsp: ENST00000578348.1:c.984A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.429A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1134A>G
  hgvsp: ENST00000582486.1:c.1134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1134A>G
  hgvsp: ENST00000582717.1:c.1134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1183A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.984A>G
  hgvsp: ENST00000538886.1:c.984A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.183A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1309A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2657A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser450Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

17-73236124-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236124
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236124
    reference: chr 17
allele count: 1924
allele frequency: 9.584537212314437e-2
allele num: 20074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1162T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.162T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2636T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.963T>C
  hgvsp: ENST00000538886.1:c.963T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1113T>C
  hgvsp: ENST00000582486.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1230T>C
  hgvsp: ENST00000351904.7:c.1230T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1113T>C
  hgvsp: ENST00000582717.1:c.1113T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1329T>C
  hgvsp: ENST00000245541.6:c.1329T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.963T>C
  hgvsp: ENST00000578348.1:c.963T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.408T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1288T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32405
  bin: 2.5e0
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 2.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 12077
  bin: 7.5e0
  variant carriers: 1276
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
hgvs: p.Asp443Asp
num of homozygotes: 271
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-73236126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236126
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236126
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 19526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.160G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1327G>A
  hgvsp: ENSP00000245541.6:p.Asp443Asn
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1111G>A
  hgvsp: ENSP00000462081.1:p.Asp371Asn
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2634G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1160G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1286G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1111G>A
  hgvsp: ENSP00000462629.1:p.Asp371Asn
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.961G>A
  hgvsp: ENSP00000463288.1:p.Asp321Asn
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1228G>A
  hgvsp: ENSP00000326575.7:p.Asp410Asn
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.406G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.961G>A
  hgvsp: ENSP00000446421.1:p.Asp321Asn
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp443Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

17-73236132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236132
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236132
    reference: chr 17
allele count: 2
allele frequency: 1.036376826614157e-4
allele num: 19298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1321G>A
  hgvsp: ENSP00000245541.6:p.Ala441Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1105G>A
  hgvsp: ENSP00000462629.1:p.Ala369Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.154G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.955G>A
  hgvsp: ENSP00000463288.1:p.Ala319Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1105G>A
  hgvsp: ENSP00000462081.1:p.Ala369Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.400G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1154G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1280G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1222G>A
  hgvsp: ENSP00000326575.7:p.Ala408Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.955G>A
  hgvsp: ENSP00000446421.1:p.Ala319Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2628G>A
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala441Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

17-73236133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236133
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236133
    reference: chr 17
allele count: 2
allele frequency: 1.049758555532228e-4
allele num: 19052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1104C>T
  hgvsp: ENST00000582486.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.153C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1279C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2627C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1104C>T
  hgvsp: ENST00000582717.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1153C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1221C>T
  hgvsp: ENST00000351904.7:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.954C>T
  hgvsp: ENST00000538886.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.399C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1320C>T
  hgvsp: ENST00000245541.6:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.954C>T
  hgvsp: ENST00000578348.1:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly440Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-73236144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236144
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236144
    reference: chr 17
allele count: 14
allele frequency: 7.510729613733906e-4
allele num: 18640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1210G>A
  hgvsp: ENSP00000326575.7:p.Ala404Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.142G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2616G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.943G>A
  hgvsp: ENSP00000463288.1:p.Ala315Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1268G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1093G>A
  hgvsp: ENSP00000462081.1:p.Ala365Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1142G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.388G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.943G>A
  hgvsp: ENSP00000446421.1:p.Ala315Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1093G>A
  hgvsp: ENSP00000462629.1:p.Ala365Thr
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1309G>A
  hgvsp: ENSP00000245541.6:p.Ala437Thr
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 33837
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala437Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

17-73236151-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236151
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236151
    reference: chr 17
allele count: 40
allele frequency: 2.180787264202377e-3
allele num: 18342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2609G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.936G>A
  hgvsp: ENST00000578348.1:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.381G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.135G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.936G>A
  hgvsp: ENST00000538886.1:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1302G>A
  hgvsp: ENST00000245541.6:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1261G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1086G>A
  hgvsp: ENST00000582486.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1135G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1203G>A
  hgvsp: ENST00000351904.7:c.1203G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1086G>A
  hgvsp: ENST00000582717.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33817
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro434Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-73236152-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236152
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236152
    reference: chr 17
allele count: 1
allele frequency: 5.456132693147097e-5
allele num: 18328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.134C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2608C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1085C>T
  hgvsp: ENSP00000462629.1:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1202C>T
  hgvsp: ENSP00000326575.7:p.Pro401Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1301C>T
  hgvsp: ENSP00000245541.6:p.Pro434Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.935C>T
  hgvsp: ENSP00000463288.1:p.Pro312Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1260C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.380C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1085C>T
  hgvsp: ENSP00000462081.1:p.Pro362Leu
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1134C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.935C>T
  hgvsp: ENSP00000446421.1:p.Pro312Leu
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro434Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-73236175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236175
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236175
    reference: chr 17
allele count: 10
allele frequency: 5.805852299117511e-4
allele num: 17224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1111C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.912C>T
  hgvsp: ENST00000578348.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1278C>T
  hgvsp: ENST00000245541.6:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1062C>T
  hgvsp: ENST00000582486.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1237C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1179C>T
  hgvsp: ENST00000351904.7:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.912C>T
  hgvsp: ENST00000538886.1:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1062C>T
  hgvsp: ENST00000582717.1:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2585C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.111C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.357C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34845
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp426Asp
num of homozygotes: 1
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

17-73236179-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236179
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236179
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1233C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.908C>G
  hgvsp: ENSP00000463288.1:p.Ser303Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1274C>G
  hgvsp: ENSP00000245541.6:p.Ser425Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1107C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2581C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.107C>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1175C>G
  hgvsp: ENSP00000326575.7:p.Ser392Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.908C>G
  hgvsp: ENSP00000446421.1:p.Ser303Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1058C>G
  hgvsp: ENSP00000462081.1:p.Ser353Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1058C>G
  hgvsp: ENSP00000462629.1:p.Ser353Cys
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.353C>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser425Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-73236185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236185
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236185
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 16262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1101A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.101A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1268A>G
  hgvsp: ENSP00000245541.6:p.Glu423Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.902A>G
  hgvsp: ENSP00000463288.1:p.Glu301Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1227A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1052A>G
  hgvsp: ENSP00000462081.1:p.Glu351Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1052A>G
  hgvsp: ENSP00000462629.1:p.Glu351Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1169A>G
  hgvsp: ENSP00000326575.7:p.Glu390Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2575A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.902A>G
  hgvsp: ENSP00000446421.1:p.Glu301Gly
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.347A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu423Gly
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

17-73236193-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236193
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236193
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 15548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2567A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-4A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.339A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1264-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-73236202-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236202
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236204
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 14744
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-15_898-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-15_1165-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-15_97-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2556_2557dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-15_1048-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-15_*1223-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-15_1048-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.328_329dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-15_*1097-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-15_1264-14dupTT
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-15_898-14dupTT
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-73236223-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236223
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236223
    reference: chr 17
allele count: 2
allele frequency: 1.239157372986369e-3
allele num: 1614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.309G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2537G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-34G>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-34G>C
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-73236223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236223
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236223
    reference: chr 17
allele count: 8
allele frequency: 4.956629491945477e-3
allele num: 1614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.309G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2537G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-34G>A
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-34G>A
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16536
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-73236227-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236227
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236227
    reference: chr 17
allele count: 7
allele frequency: 7.070707070707071e-3
allele num: 990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2533A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.305A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-38A>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-38A>C
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6411
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-73236228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236228
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236228
    reference: chr 17
allele count: 1
allele frequency: 8.464533604198409e-5
allele num: 11814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2532C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.304C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-39C>T
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-39C>T
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-73236232-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236232
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236232
    reference: chr 17
allele count: 3
allele frequency: 1.724137931034483e-3
allele num: 1740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2528T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.300T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-43T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-43T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ

17-73236233-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236233
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236234
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 10634
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2526_2527insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-45_1264-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-45_97-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-45_1165-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-45_*1223-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-45_898-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-45_1048-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-45_1048-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-45_*1097-44insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.298_299insG
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-45_898-44insG
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

17-73236235-G-GGGGGGGGGGGGGGGGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236235
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236252
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 5040
alternate allele: GGGGGGGGGGGGGGGGGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-73236238-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236238
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236238
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 10736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1048-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1165-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.294A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1048-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.97-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1097-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.898-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2522A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.898-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1264-49A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1223-49A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19785
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-73236372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236372
    reference: chr 17
allele count: 1
allele frequency: 2.618349392542941e-5
allele num: 38192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.96+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1222+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1047+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1164+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2388T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.160T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1263+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.897+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.897+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1096+51T>C
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1047+51T>C
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17055
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12060
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-73236376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 73236376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 73236376
    reference: chr 17
allele count: 1
allele frequency: 2.633242047609016e-5
allele num: 37976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000583667
  gene symbol: GGA3
  hgvsc: ENST00000583667.1:n.96+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462891
  ensembl transcript: ENST00000584978
  gene symbol: GGA3
  hgvsc: ENST00000584978.1:c.*1096+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000245541
  ensembl transcript: ENST00000245541
  gene symbol: GGA3
  hgvsc: ENST00000245541.6:c.1263+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000578275
  gene symbol: GGA3
  hgvsc: ENST00000578275.1:n.156A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462081
  ensembl transcript: ENST00000582717
  gene symbol: GGA3
  hgvsc: ENST00000582717.1:c.1047+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000440356
  ensembl transcript: ENST00000537584
  gene symbol: GGA3
  hgvsc: ENST00000537584.2:c.*1222+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000446421
  ensembl transcript: ENST00000538886
  gene symbol: GGA3
  hgvsc: ENST00000538886.1:c.897+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000326575
  ensembl transcript: ENST00000351904
  gene symbol: GGA3
  hgvsc: ENST00000351904.7:c.1164+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000463288
  ensembl transcript: ENST00000578348
  gene symbol: GGA3
  hgvsc: ENST00000578348.1:c.897+47A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000125447
  ensembl transcript: ENST00000582200
  gene symbol: GGA3
  hgvsc: ENST00000582200.1:n.2384A>G
  variant of: http://identifiers.org/hgnc/17079
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000125447
  ensembl protein: ENSP00000462629
  ensembl transcript: ENST00000582486
  gene symbol: GGA3
  hgvsc: ENST00000582486.1:c.1047+47A>G
  variant of: http://identifiers.org/hgnc/17079
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16991
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.661308e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e0

QD
type: SiteQuality
SIO_000300: 8.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.787e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.583e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 30
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-5
allele num: 65180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.13e0

DP
type: SiteQuality
SIO_000300: 1.660762e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeDepth
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.030044660982542e-4
allele num: 9852
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65154
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.259e1

VQSLOD
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SIO_000300: 5.12e-1

ReadPosRankSum
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FS
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SIO_000300: 2.698e0

MQRankSum
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SIO_000300: 1.25e0

BaseQRankSum
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SIO_000300: 3.89e0

ClippingRankSum
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SIO_000300: 1.14e0

InbreedingCoeff
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SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.657681e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 110

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 107
allele frequency: 6.488781079442086e-3
allele num: 16490
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.208668426545521e-5
allele num: 65156
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
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SIO_000300: 3.96e-2

MQRankSum
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ReadPosRankSum
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DP
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FS
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SIO_000300: 5.649999999999999e-1

MQ
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SIO_000300: 5.953e1

BaseQRankSum
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SIO_000300: 1.8e0

VQSLOD
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SIO_000300: 3.75e0

ClippingRankSum
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SIO_000300: -2.84e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 450
bin: 9.75e1
variant carriers: 3

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.605889397242607e-5
allele num: 65134
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
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FS
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SIO_000300: 0.0e0

DP
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MQRankSum
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SIO_000300: 5.23e-1

MQ
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.207e0

QD
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SIO_000300: 1.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1379
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GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535296465747536e-5
allele num: 65134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
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MQ
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SIO_000300: 5.964e1

BaseQRankSum
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SIO_000300: -2.207e0

ReadPosRankSum
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SIO_000300: 2.94e-1

MQRankSum
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SIO_000300: 5.23e-1

InbreedingCoeff
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SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.038e1

DP
type: SiteQuality
SIO_000300: 1.655474e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45822
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.138735420503377e-5
allele num: 65160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.536098310291859e-4
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.319e1

InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.203e0

MQ
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SIO_000300: 5.922e1

ReadPosRankSum
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SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 1.655034e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.75e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 150

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.457832805923377e-4
allele num: 65098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.689607229753215e-4
allele num: 11508
num of homozygotes: 0

African
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allele count: 123
allele frequency: 1.244435451234318e-2
allele num: 9884
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.820388349514563e-4
allele num: 16480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.246e1

InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 5.973e1

FS
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536145503702111e-5
allele num: 65098
num of homozygotes: 0

Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 335
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variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537184492882836e-5
allele num: 65054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
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South Asian
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European (Finnish)
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African
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Other
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Latino
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Latino
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European (Non-Finnish)
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Other
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East Asian
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FS
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QD
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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ReadPosRankSum
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ClippingRankSum
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MQ
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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QD
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 8.787346221441125e-5
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African
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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FS
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MQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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Other
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QD
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MQ
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DP
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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South Asian
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African
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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QD
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MQRankSum
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BaseQRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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allele num: 46890
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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allele num: 7232
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East Asian
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European (Finnish)
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FS
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.277159965782721e-5
allele num: 46760
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African
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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Latino
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African
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Other
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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FS
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MQ
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QD
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
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GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.985702938840349e-4
allele num: 5036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.21216e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 1.155e0

VQSLOD
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SIO_000300: 2.89e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2270
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.667535654040791e-5
allele num: 13042
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4128
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5036
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

DP
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SIO_000300: 9.21216e5

FS
type: SiteQuality
SIO_000300: 1.155e0

InbreedingCoeff
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SIO_000300: 8.6e-3

BaseQRankSum
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SIO_000300: 3.2e0

ReadPosRankSum
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SIO_000300: -3.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 5.01e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1008
bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.532030181799767e-5
allele num: 39494
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

BaseQRankSum
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SIO_000300: -3.298e0

MQRankSum
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SIO_000300: -5.27e-1

FS
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SIO_000300: 4.759e0

ClippingRankSum
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SIO_000300: 5.27e-1

VQSLOD
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DP
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SIO_000300: 8.55921e5

QD
type: SiteQuality
SIO_000300: 1.495e1

ReadPosRankSum
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SIO_000300: -7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.557e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 153
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.726844583987441e-3
allele num: 6370
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.69548999660902e-4
allele num: 5898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.561627262186823e-5
allele num: 39674
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

VQSLOD
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DP
type: SiteQuality
SIO_000300: 8.54208e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1995
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35166
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.92374956278419e-3
allele num: 5718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

FS
type: SiteQuality
SIO_000300: 3.537e0

ReadPosRankSum
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SIO_000300: -5.37e-1

BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 6.0e-2

ClippingRankSum
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SIO_000300: 2.59e-1

QD
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SIO_000300: 1.212e1

DP
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SIO_000300: 7.8502e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.91131498470948e-4
allele num: 5232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.151194302640701e-5
allele num: 31734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

DP
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VQSLOD
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FS
type: SiteQuality
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MQ
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SIO_000300: 5.833e1

BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.655337227827934e-4
allele num: 3766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.374502260916515e-5
allele num: 29634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.669994128009395e-5
allele num: 27248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.859e0

QD
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SIO_000300: 1.287e1

FS
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InbreedingCoeff
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SIO_000300: -2.45e-2

ReadPosRankSum
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SIO_000300: -2.9e-2

MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 7.00618e5

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26212
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 7.782e0

QD
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SIO_000300: 7.01e0

MQRankSum
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SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.82393e5

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4262
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 1.657000828500414e-4
allele num: 24140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.036e0

ReadPosRankSum
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SIO_000300: -9.6e-1

FS
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SIO_000300: 6.51e0

MQRankSum
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SIO_000300: -2.12e-1

DP
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VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.74e-2

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeDepth
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 493
bin: 3.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.622794468288031e-3
allele num: 4194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.899e0

BaseQRankSum
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SIO_000300: -1.3e0

MQ
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SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.54607e5

QD
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ClippingRankSum
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SIO_000300: -5.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.05318588730911e-3
allele num: 3798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1876
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-1

MQ
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SIO_000300: 5.907e1

ClippingRankSum
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SIO_000300: 3.22e-1

MQRankSum
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DP
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QD
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FS
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -1.026e0

InbreedingCoeff
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SIO_000300: -3.44e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13604
num of homozygotes: 0

European (Finnish)
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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Other
type: Population
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African
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East Asian
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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MQ
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 6.100749520655395e-4
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.3e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.541076487252125e-4
allele num: 2824
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 5.989458552946814e-4
allele num: 8348
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ClippingRankSum
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SIO_000300: 0.0e0

MQ
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
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allele frequency: 1.623376623376623e-3
allele num: 616
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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SIO_000300: 2.031e0

ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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SIO_000300: 6.41e-1

DP
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SIO_000300: 4.80776e5

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 3.739715781600598e-4
allele num: 8022
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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Other
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European (Non-Finnish)
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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DP
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ClippingRankSum
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MQ
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FS
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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MQ
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FS
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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QD
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MQ
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 4.584e0

DP
type: SiteQuality
SIO_000300: 4.37572e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.322e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.878e0

GenotypeDepth
all individuals: 40
bin: 9.25e1
variant carriers: 40

GenotypeQuality
all individuals: 6124
bin: 6.25e1
variant carriers: 107

GenotypeQuality
all individuals: 2081
bin: 1.75e1
variant carriers: 262

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 99

GenotypeQuality
all individuals: 29748
bin: 7.5e0
variant carriers: 204

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 81

GenotypeQuality
all individuals: 1624
bin: 1.25e1
variant carriers: 173

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 60

GenotypeQuality
all individuals: 1040
bin: 6.75e1
variant carriers: 56

GenotypeQuality
all individuals: 7417
bin: 2.25e1
variant carriers: 204

GenotypeQuality
all individuals: 1551
bin: 9.75e1
variant carriers: 1538

GenotypeQuality
all individuals: 3385
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 29

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 32

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 51

GenotypeQuality
all individuals: 319
bin: 2.75e1
variant carriers: 145

GenotypeQuality
all individuals: 195
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 84

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 88

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 71

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 112

Other
type: Population
allele count: 8
allele frequency: 4.301075268817205e-2
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 37
allele frequency: 9.158415841584158e-2
allele num: 404
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 5.532333415293828e-3
allele num: 8134
num of homozygotes: 0

South Asian
type: Population
allele count: 612
allele frequency: 7.705867539662553e-2
allele num: 7942
num of homozygotes: 29

East Asian
type: Population
allele count: 83
allele frequency: 1.231454005934718e-1
allele num: 674
num of homozygotes: 4

African
type: Population
allele count: 1139
allele frequency: 4.234200743494424e-1
allele num: 2690
num of homozygotes: 237

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

QD
type: SiteQuality
SIO_000300: 1.517e1

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.65164e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 2247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8176
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31959
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8058
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.996e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.74e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.31e-1

DP
type: SiteQuality
SIO_000300: 4.2119e5

QD
type: SiteQuality
SIO_000300: 1.137e1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.255650426921145e-4
allele num: 7964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.79e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

DP
type: SiteQuality
SIO_000300: 4.1802e5

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6602
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31618
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2866
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.642525533890436e-4
allele num: 2154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.27000254000508e-4
allele num: 7874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.13525e5

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.766e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 9.865e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.11e-2

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1092
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 114
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8842
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32083
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.58102766798419e-3
allele num: 7590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.926108374384236e-4
allele num: 2030
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.824858757062147e-3
allele num: 354
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.552e-1

DP
type: SiteQuality
SIO_000300: 4.07137e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 4.374e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeDepth
all individuals: 1602
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1460
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32409
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 9177
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6306
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 69
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 889
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1081
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 4.465493910690121e-3
allele num: 7390
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.923976608187134e-3
allele num: 342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.017293997965412e-3
allele num: 1966
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.098139179199592e-4
allele num: 7846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.01892e5

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.69e-2

FS
type: SiteQuality
SIO_000300: 1.288e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 681
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32683
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6325
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.274859765425803e-4
allele num: 7844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.098e0

MQ
type: SiteQuality
SIO_000300: 5.521e1

DP
type: SiteQuality
SIO_000300: 4.0138e5

QD
type: SiteQuality
SIO_000300: 1.217e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34412
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.284686536485098e-3
allele num: 7784
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.579e-1

MQ
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SIO_000300: 5.88e1

BaseQRankSum
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SIO_000300: -2.793e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
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SIO_000300: 3.58954e5

QD
type: SiteQuality
SIO_000300: 1.092e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.62e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 7.1e-1

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.4851e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.141e0

ClippingRankSum
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SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.86e-2

QD
type: SiteQuality
SIO_000300: 9.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.59e1

VQSLOD
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SIO_000300: -2.116e0

MQRankSum
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SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.27656e5

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.649e1

MQ
type: SiteQuality
SIO_000300: 5.604e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -8.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 3.00242e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 2.5651e5

InbreedingCoeff
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SIO_000300: -8.25e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

MQ
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SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.762e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 4.219409282700422e-3
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 1.334e-1

MQRankSum
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.199040767386091e-3
allele num: 834
num of homozygotes: 0

African
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allele count: 7
allele frequency: 4.022988505747126e-2
allele num: 174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.334e-1

BaseQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.172413793103448e-3
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VQSLOD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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African
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East Asian
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ClippingRankSum
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VQSLOD
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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ClippingRankSum
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VQSLOD
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DP
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QD
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FS
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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South Asian
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MQ
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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African
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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BaseQRankSum
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DP
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East Asian
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FS
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MQ
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