17-7220902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220902
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220902
    reference: chr 17
allele count: 1
allele frequency: 8.308684236764266e-6
allele num: 120356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-10C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.690C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-10C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-10C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-10C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-10C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-10C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.326C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-10C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-10C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-7220904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220904
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220904
    reference: chr 17
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-12T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-12T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-12T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-12T>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-12T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-12T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.324T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-12T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.688T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-12T>C
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8430
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

17-7220909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220909
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220909
    reference: chr 17
allele count: 97
allele frequency: 8.065052547558866e-4
allele num: 120272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.319G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.683G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-17G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-17G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-17G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12434
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-7220910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220910
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220910
    reference: chr 17
allele count: 3
allele frequency: 2.493972898827833e-5
allele num: 120290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-18C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-18C>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-18C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.318C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-18C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.682C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-18C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-18C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-18C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-18C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

17-7220911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220911
    reference: chr 17
allele count: 6
allele frequency: 4.988692297459093e-5
allele num: 120272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.681C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.317C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-19C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-19C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-19C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

17-7220913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220913
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220913
    reference: chr 17
allele count: 4
allele frequency: 3.32695666638942e-5
allele num: 120230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-21C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.679C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.315C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-21C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-21C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-7220918-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220918
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220918
    reference: chr 17
allele count: 3
allele frequency: 2.49617253544565e-5
allele num: 120184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.310A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.674A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-26A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-26A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-26A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-26A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-26A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-26A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-26A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-26A>G
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-7220919-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220919
    reference: chr 17
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-27T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-27T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-27T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-27T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.673T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-27T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-27T>C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-27T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.309T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-27T>C
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

17-7220923-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220923
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220923
    reference: chr 17
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-31G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-31G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.669G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.305G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-31G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-31G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-31G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-31G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-31G>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-31G>C
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8842
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-7220923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220923
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220923
    reference: chr 17
allele count: 2
allele frequency: 1.665944757271849e-5
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.305G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-31G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.669G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-31G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-31G>A
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-7220924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220924
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220924
    reference: chr 17
allele count: 5
allele frequency: 4.164515000583032e-5
allele num: 120062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-32C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.668C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-32C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-32C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-32C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-32C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.304C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-32C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-32C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-32C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

17-7220944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7220944
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7220944
    reference: chr 17
allele count: 1
allele frequency: 8.367080558251614e-6
allele num: 119516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4094-52A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4134-52A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4206-52A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.548-52A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.648A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.557-52A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4200-52A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.284A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.647-52A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*404-52A>G
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

17-7221066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221066
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221066
    reference: chr 17
allele count: 1
allele frequency: 8.402937667008386e-6
allele num: 119006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.162C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+41C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+41C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+41C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

17-7221067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221067
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221067
    reference: chr 17
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+40C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+40C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.161C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+40C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+40C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33321
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-7221067-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221067
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221067
    reference: chr 17
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+40C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.161C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+40C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+40C>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+40C>A
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-7221071-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221071
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221071
    reference: chr 17
allele count: 1
allele frequency: 8.40279645065878e-6
allele num: 119008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+36T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.157T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+36T>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+36T>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+36T>A
  variant of: http://identifiers.org/hgnc/34410
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-7221079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221079
    reference: chr 17
allele count: 1
allele frequency: 8.399973120086016e-6
allele num: 119048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+28C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.149C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+28C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+28C>T
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-7221085-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221085
    reference: chr 17
allele count: 6
allele frequency: 5.037106685919608e-5
allele num: 119116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+22C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.143C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+22C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+22C>G
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

17-7221099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221099
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221099
    reference: chr 17
allele count: 1
allele frequency: 8.385041086701324e-6
allele num: 119260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.129T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4205+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4199+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4133+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.588+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.646+8T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.547+8T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*403+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4093+8T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.556+8T>C
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
hgvs: c.646+8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

17-7221133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221133
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221133
    reference: chr 17
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4067C>T
  hgvsp: ENST00000571887.1:c.4067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4107C>T
  hgvsp: ENST00000570460.1:c.4107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*377C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.521C>T
  hgvsp: ENST00000315601.4:c.521C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4173C>T
  hgvsp: ENST00000315614.7:c.4173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4179C>T
  hgvsp: ENST00000399464.2:c.4179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.620C>T
  hgvsp: ENST00000575474.1:c.620C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.530C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.562C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.95C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro207Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-7221136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221136
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221136
    reference: chr 17
allele count: 15
allele frequency: 1.254978079716208e-4
allele num: 119524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.92G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.518G>A
  hgvsp: ENST00000315601.4:c.518G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4064G>A
  hgvsp: ENST00000571887.1:c.4064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.559G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4176G>A
  hgvsp: ENST00000399464.2:c.4176G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4170G>A
  hgvsp: ENST00000315614.7:c.4170G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.617G>A
  hgvsp: ENST00000575474.1:c.617G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4104G>A
  hgvsp: ENST00000570460.1:c.4104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.527G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*374G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8317
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu206Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

17-7221142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221142
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221142
    reference: chr 17
allele count: 1
allele frequency: 8.36344172353807e-6
allele num: 119568
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.611T>C
  hgvsp: ENST00000575474.1:c.611T>C(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*368T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.86T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.521T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4164T>C
  hgvsp: ENST00000315614.7:c.4164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4098T>C
  hgvsp: ENST00000570460.1:c.4098T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.553T>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.512T>C
  hgvsp: ENST00000315601.4:c.512T>C(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4170T>C
  hgvsp: ENST00000399464.2:c.4170T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4058T>C
  hgvsp: ENST00000571887.1:c.4058T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr204Tyr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-7221149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221149
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221149
    reference: chr 17
allele count: 1
allele frequency: 8.362462577979963e-6
allele num: 119582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.505G>A
  hgvsp: ENSP00000468744.1:p.Arg169Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4091G>A
  hgvsp: ENSP00000459978.1:p.Arg1364Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.79G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4163G>A
  hgvsp: ENSP00000382390.2:p.Arg1388Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.514G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4157G>A
  hgvsp: ENSP00000319826.7:p.Arg1386Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.604G>A
  hgvsp: ENSP00000468772.1:p.Arg202Gln
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*361G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.546G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4051G>A
  hgvsp: ENSP00000458469.1:p.Arg1351Gln
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg202Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-7221150-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221150
    reference: chr 17
allele count: 16
allele frequency: 1.33794925827438e-4
allele num: 119586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.513C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*360C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4090C>T
  hgvsp: ENSP00000459978.1:p.Arg1364Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4162C>T
  hgvsp: ENSP00000382390.2:p.Arg1388Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.504C>T
  hgvsp: ENSP00000468744.1:p.Arg169Trp
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.603C>T
  hgvsp: ENSP00000468772.1:p.Arg202Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4050C>T
  hgvsp: ENSP00000458469.1:p.Arg1351Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.78C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.545C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4156C>T
  hgvsp: ENSP00000319826.7:p.Arg1386Trp
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg202Trp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

17-7221155-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221155
    reference: chr 17
allele count: 1
allele frequency: 8.35812911637859e-6
allele num: 119644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.73C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4045C>G
  hgvsp: ENSP00000458469.1:p.Pro1349Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4157C>G
  hgvsp: ENSP00000382390.2:p.Pro1386Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.598C>G
  hgvsp: ENSP00000468772.1:p.Pro200Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4151C>G
  hgvsp: ENSP00000319826.7:p.Pro1384Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.540C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4085C>G
  hgvsp: ENSP00000459978.1:p.Pro1362Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*355C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.499C>G
  hgvsp: ENSP00000468744.1:p.Pro167Arg
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.508C>G
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro200Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-7221167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221167
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221167
    reference: chr 17
allele count: 43
allele frequency: 3.592314118629908e-4
allele num: 119700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4033G>A
  hgvsp: ENSP00000458469.1:p.Arg1345His
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.586G>A
  hgvsp: ENSP00000468772.1:p.Arg196His
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*343G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.487G>A
  hgvsp: ENSP00000468744.1:p.Arg163His
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4073G>A
  hgvsp: ENSP00000459978.1:p.Arg1358His
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4139G>A
  hgvsp: ENSP00000319826.7:p.Arg1380His
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.61G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.496G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4145G>A
  hgvsp: ENSP00000382390.2:p.Arg1382His
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.528G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg196His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-7221168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221168
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221168
    reference: chr 17
allele count: 2
allele frequency: 1.67089961235129e-5
allele num: 119696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4032C>T
  hgvsp: ENSP00000458469.1:p.Arg1345Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4138C>T
  hgvsp: ENSP00000319826.7:p.Arg1380Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4144C>T
  hgvsp: ENSP00000382390.2:p.Arg1382Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.486C>T
  hgvsp: ENSP00000468744.1:p.Arg163Cys
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.60C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4072C>T
  hgvsp: ENSP00000459978.1:p.Arg1358Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*342C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.527C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.495C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.585C>T
  hgvsp: ENSP00000468772.1:p.Arg196Cys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg196Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-7221172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221172
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221172
    reference: chr 17
allele count: 2
allele frequency: 1.670369318656355e-5
allele num: 119734
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.581C>T
  hgvsp: ENST00000575474.1:c.581C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.491C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.56C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.482C>T
  hgvsp: ENST00000315601.4:c.482C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4028C>T
  hgvsp: ENST00000571887.1:c.4028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4134C>T
  hgvsp: ENST00000315614.7:c.4134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4140C>T
  hgvsp: ENST00000399464.2:c.4140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4068C>T
  hgvsp: ENST00000570460.1:c.4068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*338C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.523C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33500
  bin: 9.75e1
  variant carriers: 2
hgvs: p.His194His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

17-7221176-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221176
    reference: chr 17
allele count: 1
allele frequency: 8.350591221858508e-6
allele num: 119752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.519C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.478C>G
  hgvsp: ENSP00000468744.1:p.Ala160Gly
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.52C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.487C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.577C>G
  hgvsp: ENSP00000468772.1:p.Ala193Gly
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4024C>G
  hgvsp: ENSP00000458469.1:p.Ala1342Gly
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4130C>G
  hgvsp: ENSP00000319826.7:p.Ala1377Gly
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4136C>G
  hgvsp: ENSP00000382390.2:p.Ala1379Gly
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4064C>G
  hgvsp: ENSP00000459978.1:p.Ala1355Gly
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*334C>G
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala193Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-7221181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221181
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221181
    reference: chr 17
allele count: 5
allele frequency: 4.173901429143849e-5
allele num: 119792
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4131C>T
  hgvsp: ENST00000399464.2:c.4131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*329C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4019C>T
  hgvsp: ENST00000571887.1:c.4019C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4059C>T
  hgvsp: ENST00000570460.1:c.4059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4125C>T
  hgvsp: ENST00000315614.7:c.4125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.572C>T
  hgvsp: ENST00000575474.1:c.572C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.473C>T
  hgvsp: ENST00000315601.4:c.473C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.482C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.47C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.514C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp191Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-7221185-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221185
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221185
    reference: chr 17
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.568G>A
  hgvsp: ENSP00000468772.1:p.Gly190Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4015G>A
  hgvsp: ENSP00000458469.1:p.Gly1339Glu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.478G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*325G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4055G>A
  hgvsp: ENSP00000459978.1:p.Gly1352Glu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.510G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.469G>A
  hgvsp: ENSP00000468744.1:p.Gly157Glu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4121G>A
  hgvsp: ENSP00000319826.7:p.Gly1374Glu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.43G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4127G>A
  hgvsp: ENSP00000382390.2:p.Gly1376Glu
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly190Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-7221197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221197
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221197
    reference: chr 17
allele count: 2138
allele frequency: 1.782201327064786e-2
allele num: 119964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4109G>A
  hgvsp: ENSP00000319826.7:p.Arg1370Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.556G>A
  hgvsp: ENSP00000468772.1:p.Arg186Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.457G>A
  hgvsp: ENSP00000468744.1:p.Arg153Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4003G>A
  hgvsp: ENSP00000458469.1:p.Arg1335Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.466G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4043G>A
  hgvsp: ENSP00000459978.1:p.Arg1348Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.498G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4115G>A
  hgvsp: ENSP00000382390.2:p.Arg1372Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*313G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.31G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 5.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 6496
  bin: 4.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 8.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8160
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 6.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 9.75e1
  variant carriers: 637
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg186Gln
num of homozygotes: 28
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

17-7221198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221198
    reference: chr 17
allele count: 2
allele frequency: 1.666861133798943e-5
allele num: 119986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.456C>T
  hgvsp: ENSP00000468744.1:p.Arg153Trp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.4002C>T
  hgvsp: ENSP00000458469.1:p.Arg1335Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.465C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4108C>T
  hgvsp: ENSP00000319826.7:p.Arg1370Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*312C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.497C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4114C>T
  hgvsp: ENSP00000382390.2:p.Arg1372Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.30C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4042C>T
  hgvsp: ENSP00000459978.1:p.Arg1348Trp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.555C>T
  hgvsp: ENSP00000468772.1:p.Arg186Trp
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg186Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

17-7221224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221224
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221224
    reference: chr 17
allele count: 4
allele frequency: 3.328063898826857e-5
allele num: 120190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3976G>A
  hgvsp: ENSP00000458469.1:p.Arg1326Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000572680
  gene symbol: NEURL4
  hgvsc: ENST00000572680.1:n.4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4088G>A
  hgvsp: ENSP00000382390.2:p.Arg1363Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.439G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.529G>A
  hgvsp: ENSP00000468772.1:p.Arg177Gln
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4016G>A
  hgvsp: ENSP00000459978.1:p.Arg1339Gln
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.471G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.430G>A
  hgvsp: ENSP00000468744.1:p.Arg144Gln
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*286G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4082G>A
  hgvsp: ENSP00000319826.7:p.Arg1361Gln
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg177Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

17-7221232-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221232
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221232
    reference: chr 17
allele count: 27
allele frequency: 2.245508982035928e-4
allele num: 120240
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4080G>A
  hgvsp: ENST00000399464.2:c.4080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.422G>A
  hgvsp: ENST00000315601.4:c.422G>A(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.521G>A
  hgvsp: ENST00000575474.1:c.521G>A(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3968G>A
  hgvsp: ENST00000571887.1:c.3968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4074G>A
  hgvsp: ENST00000315614.7:c.4074G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.463G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4008G>A
  hgvsp: ENST00000570460.1:c.4008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.431G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34150
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro174Pro
num of homozygotes: 1
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

17-7221233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221233
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221233
    reference: chr 17
allele count: 8
allele frequency: 6.652142821506377e-5
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.421C>T
  hgvsp: ENSP00000468744.1:p.Pro141Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4007C>T
  hgvsp: ENSP00000459978.1:p.Pro1336Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4073C>T
  hgvsp: ENSP00000319826.7:p.Pro1358Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.430C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3967C>T
  hgvsp: ENSP00000458469.1:p.Pro1323Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.520C>T
  hgvsp: ENSP00000468772.1:p.Pro174Leu
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4079C>T
  hgvsp: ENSP00000382390.2:p.Pro1360Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*277C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.462C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro174Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-7221234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221234
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221234
    reference: chr 17
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.420C>T
  hgvsp: ENSP00000468744.1:p.Pro141Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.519C>T
  hgvsp: ENSP00000468772.1:p.Pro174Ser
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4078C>T
  hgvsp: ENSP00000382390.2:p.Pro1360Ser
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.429C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3966C>T
  hgvsp: ENSP00000458469.1:p.Pro1323Ser
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*276C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4006C>T
  hgvsp: ENSP00000459978.1:p.Pro1336Ser
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.461C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4072C>T
  hgvsp: ENSP00000319826.7:p.Pro1358Ser
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro174Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-7221240-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221240
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221240
    reference: chr 17
allele count: 18
allele frequency: 1.495911176118609e-4
allele num: 120328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3960A>C
  hgvsp: ENSP00000458469.1:p.Met1321Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.423A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.414A>C
  hgvsp: ENSP00000468744.1:p.Met139Leu
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.455A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4066A>C
  hgvsp: ENSP00000319826.7:p.Met1356Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*270A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4072A>C
  hgvsp: ENSP00000382390.2:p.Met1358Leu
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.513A>C
  hgvsp: ENSP00000468772.1:p.Met172Leu
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.4000A>C
  hgvsp: ENSP00000459978.1:p.Met1334Leu
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7407
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met172Leu
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-7221250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221250
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221250
    reference: chr 17
allele count: 1
allele frequency: 8.307027745472669e-6
allele num: 120380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3950A>G
  hgvsp: ENST00000571887.1:c.3950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.503A>G
  hgvsp: ENST00000575474.1:c.503A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.413A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3990A>G
  hgvsp: ENST00000570460.1:c.3990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.404A>G
  hgvsp: ENST00000315601.4:c.404A>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.445A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4062A>G
  hgvsp: ENST00000399464.2:c.4062A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4056A>G
  hgvsp: ENST00000315614.7:c.4056A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*260A>G
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: c.503A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-7221250-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221250
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221250
    reference: chr 17
allele count: 6
allele frequency: 4.984216647283602e-5
allele num: 120380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3990A>C
  hgvsp: ENSP00000459978.1:p.Glu1330Asp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4056A>C
  hgvsp: ENSP00000319826.7:p.Glu1352Asp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3950A>C
  hgvsp: ENSP00000458469.1:p.Glu1317Asp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.445A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*260A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4062A>C
  hgvsp: ENSP00000382390.2:p.Glu1354Asp
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.413A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.503A>C
  hgvsp: ENSP00000468772.1:p.Glu168Asp
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.404A>C
  hgvsp: ENSP00000468744.1:p.Glu135Asp
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu168Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-7221255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221255
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221255
    reference: chr 17
allele count: 2
allele frequency: 1.661377946869133e-5
allele num: 120382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-4G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-4G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-4G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-4G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 6.75e1
  variant carriers: 0
hgvs: c.502-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-7221256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221256
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221256
    reference: chr 17
allele count: 7
allele frequency: 5.813856912675869e-5
allele num: 120402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-5C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-5C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-5C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-5C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: c.502-5C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-7221262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221262
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221262
    reference: chr 17
allele count: 2
allele frequency: 1.66013679527193e-5
allele num: 120472
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-11C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-11C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-11C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-11C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

17-7221264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221264
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221264
    reference: chr 17
allele count: 4
allele frequency: 3.32021847037535e-5
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-13C>T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-13C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-13C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-13C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-7221285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221285
    reference: chr 17
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-34C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-34C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-34C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-34C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

17-7221293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221293
    reference: chr 17
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-42G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-42G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-42G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-42G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

17-7221302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221302
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221302
    reference: chr 17
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.502-51G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.412-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4061-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*259-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3949-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4055-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.403-51G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3989-51G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.444-51G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-7221338-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221338
    reference: chr 17
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+46G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+46G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+46G>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-7221338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221338
    reference: chr 17
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+46G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+46G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+46G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24699
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS

17-7221349-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221349
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221349
    reference: chr 17
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+35C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+35C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+35C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53863
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-7221353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221353
    reference: chr 17
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+31C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+31C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+31C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+31C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24700
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-7221363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221363
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221363
    reference: chr 17
allele count: 18
allele frequency: 1.490856082692817e-4
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+21G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+21G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+21G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+21G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24702
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53869
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

17-7221367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221367
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221367
    reference: chr 17
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+17G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+17G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+17G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+17G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24703
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-7221368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221368
    reference: chr 17
allele count: 5
allele frequency: 4.14112970018221e-5
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+16C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+16C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+16C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+16C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24706
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

17-7221371-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221371
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221369
    reference: chr 17
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+11_3988+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+11_501+12delCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+11_443+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+11_4054+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+11_3948+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+11_411+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+11_*258+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+11_4060+12delCA
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+11_402+12delCA
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53889
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTG
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-7221372-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221372
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221372
    reference: chr 17
allele count: 5
allele frequency: 4.140992513085536e-5
allele num: 120744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+12A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+12A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+12A>C
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+12A>C
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24707
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

17-7221375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221375
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221375
    reference: chr 17
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.501+9C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.411+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3948+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*258+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.402+9C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.443+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3988+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4054+9C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4060+9C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24709
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS

17-7221385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221385
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221385
    reference: chr 17
allele count: 76212
allele frequency: 6.311343723603359e-1
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.500C>T
  hgvsp: ENST00000575474.1:c.500C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4053C>T
  hgvsp: ENST00000315614.7:c.4053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.410C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.442C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3987C>T
  hgvsp: ENST00000570460.1:c.3987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3947C>T
  hgvsp: ENST00000571887.1:c.3947C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*257C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.401C>T
  hgvsp: ENST00000315601.4:c.401C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4059C>T
  hgvsp: ENST00000399464.2:c.4059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 2.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 9.25e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 6.25e1
  variant carriers: 849
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.75e1
  variant carriers: 711
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 8.25e1
  variant carriers: 754
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.75e1
  variant carriers: 811
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 8.75e1
  variant carriers: 762
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 6.75e1
  variant carriers: 838
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 7.25e1
  variant carriers: 827
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 667
genotype depth: GenotypeDepth
  all individuals: 43693
  bin: 9.75e1
  variant carriers: 42499
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 1
hgvs: c.500C>T
num of homozygotes: 25123
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-7221394-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221394
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221391
    reference: chr 17
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4041_4043delCCT
  hgvsp: ENSP00000319826.7:p.Leu1350del
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*245_*247delCCT
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.488_490delCCT
  hgvsp: ENSP00000468772.1:p.Leu166del
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.389_391delCCT
  hgvsp: ENSP00000468744.1:p.Leu133del
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3935_3937delCCT
  hgvsp: ENSP00000458469.1:p.Leu1315del
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4047_4049delCCT
  hgvsp: ENSP00000382390.2:p.Leu1352del
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.430_432delCCT
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3975_3977delCCT
  hgvsp: ENSP00000459978.1:p.Leu1328del
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.398_400delCCT
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16747
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu166del
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: CAGG
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

17-7221397-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221397
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221397
    reference: chr 17
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4047C>G
  hgvsp: ENST00000399464.2:c.4047C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3975C>G
  hgvsp: ENST00000570460.1:c.3975C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.398C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.389C>G
  hgvsp: ENST00000315601.4:c.389C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.430C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.488C>G
  hgvsp: ENST00000575474.1:c.488C>G(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*245C>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3935C>G
  hgvsp: ENST00000571887.1:c.3935C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4041C>G
  hgvsp: ENST00000315614.7:c.4041C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu163Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-7221404-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221404
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221404
    reference: chr 17
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*238A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3968A>G
  hgvsp: ENSP00000459978.1:p.Gln1323Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.423A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4034A>G
  hgvsp: ENSP00000319826.7:p.Gln1345Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.481A>G
  hgvsp: ENSP00000468772.1:p.Gln161Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.382A>G
  hgvsp: ENSP00000468744.1:p.Gln128Arg
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3928A>G
  hgvsp: ENSP00000458469.1:p.Gln1310Arg
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.391A>G
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4040A>G
  hgvsp: ENSP00000382390.2:p.Gln1347Arg
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16744
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln161Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-7221406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221406
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221406
    reference: chr 17
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.421C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3926C>T
  hgvsp: ENST00000571887.1:c.3926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4038C>T
  hgvsp: ENST00000399464.2:c.4038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.380C>T
  hgvsp: ENST00000315601.4:c.380C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.479C>T
  hgvsp: ENST00000575474.1:c.479C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.389C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3966C>T
  hgvsp: ENST00000570460.1:c.3966C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*236C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4032C>T
  hgvsp: ENST00000315614.7:c.4032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16743
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54130
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe160Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-7221411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221411
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221411
    reference: chr 17
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.474C>T
  hgvsp: ENSP00000468772.1:p.Arg159Cys
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3961C>T
  hgvsp: ENSP00000459978.1:p.Arg1321Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4033C>T
  hgvsp: ENSP00000382390.2:p.Arg1345Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.416C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3921C>T
  hgvsp: ENSP00000458469.1:p.Arg1308Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.384C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*231C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4027C>T
  hgvsp: ENSP00000319826.7:p.Arg1343Cys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.375C>T
  hgvsp: ENSP00000468744.1:p.Arg126Cys
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16743
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54130
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg159Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

17-7221432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221432
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221432
    reference: chr 17
allele count: 3
allele frequency: 2.484225170169424e-5
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.395G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.354G>A
  hgvsp: ENSP00000468744.1:p.Glu119Lys
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*210G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4006G>A
  hgvsp: ENSP00000319826.7:p.Glu1336Lys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.453G>A
  hgvsp: ENSP00000468772.1:p.Glu152Lys
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4012G>A
  hgvsp: ENSP00000382390.2:p.Glu1338Lys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3940G>A
  hgvsp: ENSP00000459978.1:p.Glu1314Lys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3900G>A
  hgvsp: ENSP00000458469.1:p.Glu1301Lys
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.363G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16743
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu152Lys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-7221434-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221434
    reference: chr 17
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3898G>A
  hgvsp: ENSP00000458469.1:p.Cys1300Tyr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.451G>A
  hgvsp: ENSP00000468772.1:p.Cys151Tyr
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.361G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.352G>A
  hgvsp: ENSP00000468744.1:p.Cys118Tyr
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4010G>A
  hgvsp: ENSP00000382390.2:p.Cys1337Tyr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3938G>A
  hgvsp: ENSP00000459978.1:p.Cys1313Tyr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4004G>A
  hgvsp: ENSP00000319826.7:p.Cys1335Tyr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.393G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16741
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54125
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys151Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/17-7221437-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221437
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221437
    reference: chr 17
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*205G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.4001G>T
  hgvsp: ENSP00000319826.7:p.Ser1334Ile
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.349G>T
  hgvsp: ENSP00000468744.1:p.Ser117Ile
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.390G>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3895G>T
  hgvsp: ENSP00000458469.1:p.Ser1299Ile
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.448G>T
  hgvsp: ENSP00000468772.1:p.Ser150Ile
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3935G>T
  hgvsp: ENSP00000459978.1:p.Ser1312Ile
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4007G>T
  hgvsp: ENSP00000382390.2:p.Ser1336Ile
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.358G>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16740
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser150Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-7221444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221444
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221444
    reference: chr 17
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.351C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.441C>T
  hgvsp: ENST00000575474.1:c.441C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*198C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.4000C>T
  hgvsp: ENST00000399464.2:c.4000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.3994C>T
  hgvsp: ENST00000315614.7:c.3994C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.342C>T
  hgvsp: ENST00000315601.4:c.342C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3928C>T
  hgvsp: ENST00000570460.1:c.3928C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3888C>T
  hgvsp: ENST00000571887.1:c.3888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.383C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16739
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu148Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

17-7221453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221453
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221453
    reference: chr 17
allele count: 34
allele frequency: 2.815501821795296e-4
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.342G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.3991G>A
  hgvsp: ENSP00000382390.2:p.Ala1331Thr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.432G>A
  hgvsp: ENSP00000468772.1:p.Ala145Thr
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*189G>A
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3919G>A
  hgvsp: ENSP00000459978.1:p.Ala1307Thr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.333G>A
  hgvsp: ENSP00000468744.1:p.Ala112Thr
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3879G>A
  hgvsp: ENSP00000458469.1:p.Ala1294Thr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.3985G>A
  hgvsp: ENSP00000319826.7:p.Ala1329Thr
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.374G>A
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16741
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala145Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-7221454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 7221454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 7221454
    reference: chr 17
allele count: 64
allele frequency: 5.299943688098314e-4
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000458469
  ensembl transcript: ENST00000571887
  gene symbol: NEURL4
  hgvsc: ENST00000571887.1:c.3878C>T
  hgvsp: ENST00000571887.1:c.3878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000319826
  ensembl transcript: ENST00000315614
  gene symbol: NEURL4
  hgvsc: ENST00000315614.7:c.3984C>T
  hgvsp: ENST00000315614.7:c.3984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000576794
  gene symbol: NEURL4
  hgvsc: ENST00000576794.1:n.341C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000382390
  ensembl transcript: ENST00000399464
  gene symbol: NEURL4
  hgvsc: ENST00000399464.2:c.3990C>T
  hgvsp: ENST00000399464.2:c.3990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468744
  ensembl transcript: ENST00000315601
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000315601.4:c.332C>T
  hgvsp: ENST00000315601.4:c.332C>T(p.%3D)
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000261915
  ensembl protein: ENSP00000468772
  ensembl transcript: ENST00000575474
  gene symbol: RP11-542C16.2
  hgvsc: ENST00000575474.1:c.431C>T
  hgvsp: ENST00000575474.1:c.431C>T(p.%3D)
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000460062
  ensembl transcript: ENST00000573186
  gene symbol: NEURL4
  hgvsc: ENST00000573186.1:c.*188C>T
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000215041
  ensembl protein: ENSP00000459978
  ensembl transcript: ENST00000570460
  gene symbol: NEURL4
  hgvsc: ENST00000570460.1:c.3918C>T
  hgvsp: ENST00000570460.1:c.3918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/34410
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215041
  ensembl transcript: ENST00000574120
  gene symbol: NEURL4
  hgvsc: ENST00000574120.1:n.373C>T
  variant of: http://identifiers.org/hgnc/34410
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala144Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026061974143238e-4
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.880988e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 4.108e0

QD
type: SiteQuality
SIO_000300: 1.78e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.973e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 2493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026061974143238e-4
allele num: 9746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.286e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 8.037000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.551e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.880437e6

GenotypeQuality
all individuals: 24025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8927
bin: 9.75e1
variant carriers: 96

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.079449804968179e-4
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.511944360447536e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 82
allele frequency: 1.23419626730885e-3
allele num: 66440
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

DP
type: SiteQuality
SIO_000300: 1.875428e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8315
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215953307392996e-4
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.871261e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

FS
type: SiteQuality
SIO_000300: 4.558e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.63e-1

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.031248118489976e-5
allele num: 66436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 4.367e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.869666e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23740
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8851
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.46860908775581e-4
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.948e0

FS
type: SiteQuality
SIO_000300: 9.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.865136e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.77e-1

QD
type: SiteQuality
SIO_000300: 1.234e1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8843
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22441
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519705917801615e-5
allele num: 66376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e0

FS
type: SiteQuality
SIO_000300: 2.942e0

QD
type: SiteQuality
SIO_000300: 1.621e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 1.850072e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
all individuals: 18
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

MQ
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SIO_000300: 5.816e1

InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 2.13e0

MQRankSum
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SIO_000300: 4.8e-1

QD
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FS
type: SiteQuality
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VQSLOD
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SIO_000300: -1.477e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66314
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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QD
type: SiteQuality
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MQRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.834833e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 0.0e0
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DP
type: SiteQuality
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FS
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 4.7e-3

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.52502337928746e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.02880658436214e-4
allele num: 9720
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
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QD
type: SiteQuality
SIO_000300: 1.434e1

DP
type: SiteQuality
SIO_000300: 1.823618e6

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
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SIO_000300: -2.848e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66016
num of homozygotes: 0

East Asian
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allele count: 0
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allele num: 8510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.102e0

MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 1
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allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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VQSLOD
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QD
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FS
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

Other
type: Population
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East Asian
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 2.402465e6

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33336
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521884702014975e-5
allele num: 65708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.406102e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.343e0

QD
type: SiteQuality
SIO_000300: 1.42e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.93e-1

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521838380763963e-5
allele num: 65710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.872e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.414352e6

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
all individuals: 6851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.606413728055496e-5
allele num: 65734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.41965e6

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 750
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519664458087654e-5
allele num: 65804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.735e-1

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
SIO_000300: 2.428907e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.047339757017176e-4
allele num: 9548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65924
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

FS
type: SiteQuality
SIO_000300: 1.806e0

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

DP
type: SiteQuality
SIO_000300: 2.438517e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.522035549062576e-4
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 2.439253e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.175e1

GenotypeQuality
all individuals: 2407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3681
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 9.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 2.439659e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.54e-1

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7384
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 1.2387e1

BaseQRankSum
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SIO_000300: 1.05e0

QD
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SIO_000300: 1.476e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.440867e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 16
allele frequency: 2.424683275747105e-4
allele num: 65988
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
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SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

African
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allele frequency: 1.045150501672241e-4
allele num: 9568
num of homozygotes: 0

South Asian
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allele count: 0
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ReadPosRankSum
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SIO_000300: -1.07e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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DP
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MQ
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FS
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MQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.089427496865859e-4
allele num: 9572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 33
allele frequency: 4.995761172338622e-4
allele num: 66056
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 7
allele frequency: 1.059001512859304e-3
allele num: 6610
num of homozygotes: 0

East Asian
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MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
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InbreedingCoeff
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SIO_000300: -7.0e-4

BaseQRankSum
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SIO_000300: -8.100000000000001e-1

FS
type: SiteQuality
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DP
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SIO_000300: 2.445303e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
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allele frequency: 1.215509906405737e-4
allele num: 16454
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66052
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InbreedingCoeff
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.984e1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

Latino
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allele num: 11526
num of homozygotes: 0

South Asian
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allele num: 16462
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
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QD
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66086
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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num of homozygotes: 0

East Asian
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South Asian
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InbreedingCoeff
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MQRankSum
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DP
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QD
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

African
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.05052185751021e-5
allele num: 66110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.44834e6

FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele num: 9610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.458e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 2.448929e6

QD
type: SiteQuality
SIO_000300: 1.481e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 4.657e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 3189
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 7531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34328
bin: 9.75e1
variant carriers: 2108

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3112
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2269
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 110
allele frequency: 9.540329575021683e-3
allele num: 11530
num of homozygotes: 1

African
type: Population
allele count: 31
allele frequency: 3.219775654341504e-3
allele num: 9628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 181
allele frequency: 2.737447065940714e-2
allele num: 6612
num of homozygotes: 2

South Asian
type: Population
allele count: 41
allele frequency: 2.489072365225838e-3
allele num: 16472
num of homozygotes: 1

Other
type: Population
allele count: 16
allele frequency: 1.789709172259508e-2
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1758
allele frequency: 2.654626721430297e-2
allele num: 66224
num of homozygotes: 24

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.534887e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34130
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 3188
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7595
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variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019597185735423e-5
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.966e1

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 2.52155e6

VQSLOD
type: SiteQuality
SIO_000300: -2.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

MQ
type: SiteQuality
SIO_000300: 5.894e1

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34136
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 7670
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
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variant carriers: 0

GenotypeQuality
all individuals: 3221
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 3703
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520114509567576e-5
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 2.524398e6

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 3703
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 3190
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variant carriers: 0

GenotypeQuality
all individuals: 2404
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variant carriers: 0

GenotypeQuality
all individuals: 7672
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variant carriers: 0

GenotypeQuality
all individuals: 319
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variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213297743266198e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 2.786809103576405e-3
allele num: 8612
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.526684e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.594e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 3707
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 34154
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variant carriers: 8

GenotypeQuality
all individuals: 2290
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variant carriers: 0

GenotypeQuality
all individuals: 3192
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variant carriers: 0

GenotypeQuality
all individuals: 7689
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.127115146512588e-4
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011776044333343e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 1.757e0

QD
type: SiteQuality
SIO_000300: 1.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 2.526966e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34152
bin: 9.75e1
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3222
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variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 2.526937e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.795e1

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.652e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.399e0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 2413
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 16
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.655011251514627e-4
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.204130166470996e-4
allele num: 66438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 2.528189e6

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 2293
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 7637
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 2409
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GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 3142
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variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 34165
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.375e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 2.528059e6

FS
type: SiteQuality
SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.017390257845172e-5
allele num: 66474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 2.528059e6

VQSLOD
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SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 2.528555e6

MQRankSum
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SIO_000300: -7.24e-1

FS
type: SiteQuality
SIO_000300: 1.744e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.23e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.024727754046086e-5
allele num: 66484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.528842e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 2.08e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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FS
type: SiteQuality
SIO_000300: 5.172e0

DP
type: SiteQuality
SIO_000300: 2.528949e6

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.399e0

VQSLOD
type: SiteQuality
SIO_000300: -5.763e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 2.529088e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11570
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
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allele num: 8622
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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African
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allele num: 9782
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South Asian
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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MQ
type: SiteQuality
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DP
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele num: 896
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8618
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African
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allele frequency: 1.021867974657674e-4
allele num: 9786
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South Asian
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FS
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BaseQRankSum
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SIO_000300: -7.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 2.53058e6

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.365649e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.46e1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.092e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 573
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variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.092e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 5.365649e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.46e1

FS
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 607
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variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 2.662e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 4.572e0

DP
type: SiteQuality
SIO_000300: 5.368884e6

VQSLOD
type: SiteQuality
SIO_000300: -2.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.209e0

VQSLOD
type: SiteQuality
SIO_000300: -1.326e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 2.544e0

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 5.369451e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.854857407836773e-3
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 5.37174e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.047e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

DP
type: SiteQuality
SIO_000300: 5.372692e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.040399918384003e-4
allele num: 9802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 5.373131e6

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.056e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.373648e6

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 23
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53901
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 911
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

VQSLOD
type: SiteQuality
SIO_000300: 5.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.6e-1

DP
type: SiteQuality
SIO_000300: 5.374048e6

FS
type: SiteQuality
SIO_000300: 1.658e0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 248
bin: 7.75e1
variant carriers: 29

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 13

GenotypeQuality
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bin: 5.25e1
variant carriers: 7

GenotypeQuality
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bin: 9.75e1
variant carriers: 50940

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 2.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 30

GenotypeQuality
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bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 174
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 625
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 32

Latino
type: Population
allele count: 9256
allele frequency: 7.997235182305167e-1
allele num: 11574
num of homozygotes: 3777

European (Non-Finnish)
type: Population
allele count: 37256
allele frequency: 5.582928729844752e-1
allele num: 66732
num of homozygotes: 10544

African
type: Population
allele count: 5777
allele frequency: 5.893695164252194e-1
allele num: 9802
num of homozygotes: 1694

East Asian
type: Population
allele count: 8062
allele frequency: 9.348330241187384e-1
allele num: 8624
num of homozygotes: 3766

European (Finnish)
type: Population
allele count: 4206
allele frequency: 6.361161524500908e-1
allele num: 6612
num of homozygotes: 1367

South Asian
type: Population
allele count: 11091
allele frequency: 6.717746820109025e-1
allele num: 16510
num of homozygotes: 3789

Other
type: Population
allele count: 564
allele frequency: 6.266666666666667e-1
allele num: 900
num of homozygotes: 186

DP
type: SiteQuality
SIO_000300: 8.958757e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 2.223e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.82e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

GenotypeQuality
all individuals: 1398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
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variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.818e1

DP
type: SiteQuality
SIO_000300: 4.917507e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

QD
type: SiteQuality
SIO_000300: 1.551e1

GenotypeQuality
all individuals: 848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 630
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 688
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 904
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 838
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

FS
type: SiteQuality
SIO_000300: 1.744e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

DP
type: SiteQuality
SIO_000300: 4.917369e6

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.325e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 5.772e1

QD
type: SiteQuality
SIO_000300: 1.506e1

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1415
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 910
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GenotypeQuality
all individuals: 628
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

FS
type: SiteQuality
SIO_000300: 6.689e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.091e1

DP
type: SiteQuality
SIO_000300: 4.917266e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 4.521e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

DP
type: SiteQuality
SIO_000300: 4.917174e6

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 9.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.018e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.917018e6

FS
type: SiteQuality
SIO_000300: 7.825e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 4.916703e6

FS
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 4.916409e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

QD
type: SiteQuality
SIO_000300: 1.377e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 3.136e0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.217e0

QD
type: SiteQuality
SIO_000300: 1.125e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.574e0

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-1

DP
type: SiteQuality
SIO_000300: 4.916276e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.347e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.43e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

FS
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 4.916063e6

GenotypeQuality
all individuals: 54123
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 3.825643403663343e-3
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.21e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 1.893e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 4.915703e6

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54119
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 6.124948958758677e-3
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 4.914834e6

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.82e-1