X-70612894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070612894
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070612894
    reference: chr 0
allele count: 1
allele frequency: 1.162844783478301e-5
allele num: 85996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3111+50G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3048+50G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3048+50G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3111+50G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-70613110-GTGTGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613104
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 72099
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-39_3112-34delGTGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-39_3112-34delGTGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-39_3049-34delGTGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-39_3049-34delGTGTAT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: GTGTGTA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-70613112-GTGTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613108
    reference: chr 0
allele count: 13
allele frequency: 1.802026586823027e-4
allele num: 72141
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-37_3112-34delGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-37_3049-34delGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-37_3049-34delGTAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-37_3112-34delGTAT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: GTGTA
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

X-70613114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613114
    reference: chr 0
allele count: 18
allele frequency: 2.619591634770713e-4
allele num: 68713
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-37G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-37G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-37G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-37G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-70613114-G-GTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613116
    reference: chr 0
allele count: 15
allele frequency: 2.182993028975594e-4
allele num: 68713
alternate allele: GTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-33_3112-32dupAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-33_3112-32dupAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-33_3049-32dupAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-33_3049-32dupAT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-70613114-GTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613112
    reference: chr 0
allele count: 28
allele frequency: 4.074920320754443e-4
allele num: 68713
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-33_3112-32delAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-33_3049-32delAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-33_3049-32delAT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-33_3112-32delAT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 908
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 288
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 980
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9971
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: GTA
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-70613114-GTATATTTATATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613102
    reference: chr 0
allele count: 1
allele frequency: 1.455328685983729e-5
allele num: 68713
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 288
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1061
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genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 357
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num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.377220768489189e-4
  allele num: 7261
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5616
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3865
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 39322
  num of homozygotes: 0
population: South Asian
population: Other
population: Latino
reference allele: GTATATTTATATT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-70613116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613116
    reference: chr 0
allele count: 22
allele frequency: 3.14227357776413e-4
allele num: 70013
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-35A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-35A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-35A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-35A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 327
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13492
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genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 8
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 234
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18852
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9278
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1302
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ

X-70613118-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613118
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613118
    reference: chr 0
allele count: 2
allele frequency: 2.720977375073126e-5
allele num: 73503
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-33A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-33A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-33A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-33A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-70613124-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613124
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613123
    reference: chr 0
allele count: 4
allele frequency: 5.251825009190694e-5
allele num: 76164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-24delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-24delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-24delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-24delT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 925
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: AT
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

X-70613132-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613132
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613132
    reference: chr 0
allele count: 1
allele frequency: 1.246292280465615e-5
allele num: 80238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-19G>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-19G>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-19G>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-19G>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-70613146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613146
    reference: chr 0
allele count: 3
allele frequency: 3.637951105937136e-5
allele num: 82464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-5C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-5C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-5C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-5C>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 365
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hgvs: c.3112-5C>T
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

X-70613147-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613147
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613147
    reference: chr 0
allele count: 2
allele frequency: 2.420662777468471e-5
allele num: 82622
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3112-4G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3112-4G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3049-4G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3049-4G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 307
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genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.75e1
  variant carriers: 0
hgvs: c.3112-4G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

X-70613165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613165
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613165
    reference: chr 0
allele count: 1
allele frequency: 1.189216187610746e-5
allele num: 84089
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3063C>T
  hgvsp: ENST00000373790.4:c.3063C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3126C>T
  hgvsp: ENST00000276072.3:c.3126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3063C>T
  hgvsp: ENST00000449580.1:c.3063C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3126C>T
  hgvsp: ENST00000423759.1:c.3126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 55
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  variant carriers: 0
hgvs: p.Ser1042Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-70613183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613183
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613183
    reference: chr 0
allele count: 1
allele frequency: 1.166520851560222e-5
allele num: 85725
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3144T>C
  hgvsp: ENST00000423759.1:c.3144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3081T>C
  hgvsp: ENST00000449580.1:c.3081T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3081T>C
  hgvsp: ENST00000373790.4:c.3081T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3144T>C
  hgvsp: ENST00000276072.3:c.3144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 154
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  variant carriers: 0
hgvs: p.Asp1048Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

X-70613189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613189
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613189
    reference: chr 0
allele count: 12
allele frequency: 1.39588446729559e-4
allele num: 85967
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3087G>A
  hgvsp: ENST00000373790.4:c.3087G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3150G>A
  hgvsp: ENST00000276072.3:c.3150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3087G>A
  hgvsp: ENST00000449580.1:c.3087G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3150G>A
  hgvsp: ENST00000423759.1:c.3150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 0
hgvs: p.Val1050Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

X-70613195-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613195
    reference: chr 0
allele count: 1
allele frequency: 1.159285879897983e-5
allele num: 86260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3093A>C
  hgvsp: ENST00000373790.4:c.3093A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3156A>C
  hgvsp: ENST00000276072.3:c.3156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3093A>C
  hgvsp: ENST00000449580.1:c.3093A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3156A>C
  hgvsp: ENST00000423759.1:c.3156A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr1052Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

X-70613201-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613201
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613201
    reference: chr 0
allele count: 2
allele frequency: 2.314252322930769e-5
allele num: 86421
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3099A>T
  hgvsp: ENST00000373790.4:c.3099A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3162A>T
  hgvsp: ENST00000423759.1:c.3162A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3099A>T
  hgvsp: ENST00000449580.1:c.3099A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3162A>T
  hgvsp: ENST00000276072.3:c.3162A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5841
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 46085
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  variant carriers: 0
hgvs: p.Ser1054Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

X-70613218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613218
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613218
    reference: chr 0
allele count: 1
allele frequency: 1.15438782813474e-5
allele num: 86626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3116C>T
  hgvsp: ENSP00000389000.1:p.Ser1039Phe
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3179C>T
  hgvsp: ENSP00000406549.1:p.Ser1060Phe
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3179C>T
  hgvsp: ENSP00000276072.3:p.Ser1060Phe
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3116C>T
  hgvsp: ENSP00000362895.4:p.Ser1039Phe
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2480
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hgvs: p.Ser1060Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-70613228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613228
    reference: chr 0
allele count: 1
allele frequency: 1.15462774801404e-5
allele num: 86608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3126G>A
  hgvsp: ENST00000373790.4:c.3126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3126G>A
  hgvsp: ENST00000449580.1:c.3126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3189G>A
  hgvsp: ENST00000276072.3:c.3189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3189G>A
  hgvsp: ENST00000423759.1:c.3189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly1063Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

X-70613228-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613228
    reference: chr 0
allele count: 1
allele frequency: 1.15462774801404e-5
allele num: 86608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3189G>T
  hgvsp: ENST00000423759.1:c.3189G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3126G>T
  hgvsp: ENST00000373790.4:c.3126G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3126G>T
  hgvsp: ENST00000449580.1:c.3126G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3189G>T
  hgvsp: ENST00000276072.3:c.3189G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21342
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46110
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1063Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

X-70613273-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613273
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613273
    reference: chr 0
allele count: 1
allele frequency: 1.175571621701052e-5
allele num: 85065
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3234G>A
  hgvsp: ENST00000423759.1:c.3234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3234G>A
  hgvsp: ENST00000276072.3:c.3234G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3171G>A
  hgvsp: ENST00000449580.1:c.3171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3171G>A
  hgvsp: ENST00000373790.4:c.3171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5867
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2479
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1496
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 280
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genotype quality: GenotypeQuality
  all individuals: 83
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
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genotype quality: GenotypeQuality
  all individuals: 5574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu1078Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-70613307-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613307
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613307
    reference: chr 0
allele count: 1
allele frequency: 1.210800339024095e-5
allele num: 82590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3205A>G
  hgvsp: ENSP00000362895.4:p.Ile1069Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3205A>G
  hgvsp: ENSP00000389000.1:p.Ile1069Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3268A>G
  hgvsp: ENSP00000276072.3:p.Ile1090Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3268A>G
  hgvsp: ENSP00000406549.1:p.Ile1090Val
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41249
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile1090Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD

X-70613318-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613318
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613318
    reference: chr 0
allele count: 1
allele frequency: 1.231208677558759e-5
allele num: 81221
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3279A>G
  hgvsp: ENST00000276072.3:c.3279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3216A>G
  hgvsp: ENST00000449580.1:c.3216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3279A>G
  hgvsp: ENST00000423759.1:c.3279A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3216A>G
  hgvsp: ENST00000373790.4:c.3216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19975
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1093Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-70613333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613333
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613333
    reference: chr 0
allele count: 10
allele frequency: 1.277073968124234e-4
allele num: 78304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+7C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+7C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+7C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.3287+7C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-70613334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613334
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613334
    reference: chr 0
allele count: 3
allele frequency: 3.836415253587048e-5
allele num: 78198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+8G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+8G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+8G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+8G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.3287+8G>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-70613345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613345
    reference: chr 0
allele count: 1
allele frequency: 1.305636432479012e-5
allele num: 76591
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+19G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+19G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+19G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+19G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-70613346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613346
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613346
    reference: chr 0
allele count: 1
allele frequency: 1.309671927182241e-5
allele num: 76355
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+20C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+20C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+20C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+20C>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

X-70613351-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613351
    reference: chr 0
allele count: 4
allele frequency: 5.270161662208988e-5
allele num: 75899
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+25A>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+25A>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+25A>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+25A>C
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
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site quality: BaseQRankSum

X-70613351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613351
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613351
    reference: chr 0
allele count: 21
allele frequency: 2.766834872659719e-4
allele num: 75899
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+25A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+25A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+25A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+25A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
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X-70613366-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613366
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613366
    reference: chr 0
allele count: 1
allele frequency: 1.372702439292235e-5
allele num: 72849
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3287+40G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3224+40G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3287+40G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3224+40G>C
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
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X-70613873-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613873
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613873
    reference: chr 0
allele count: 4
allele frequency: 9.762288280372919e-5
allele num: 40974
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3288-44A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3225-44A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3225-44A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3288-44A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12373
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
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X-70613879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613879
    reference: chr 0
allele count: 1
allele frequency: 2.422245906404418e-5
allele num: 41284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3225-38C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3288-38C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3225-38C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3288-38C>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-70613901-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613900
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 50239
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3288-11delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3225-11delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3288-11delT
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3225-11delT
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: CT
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-70613911-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613911
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613911
    reference: chr 0
allele count: 36
allele frequency: 6.224066390041493e-4
allele num: 57840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3225-6T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3288-6T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3225-6T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3288-6T>C
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 203
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  variant carriers: 0
hgvs: c.3288-6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-70613930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613930
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613930
    reference: chr 0
allele count: 1
allele frequency: 1.399208048244694e-5
allele num: 71469
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3238A>G
  hgvsp: ENSP00000389000.1:p.Thr1080Ala
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3301A>G
  hgvsp: ENSP00000406549.1:p.Thr1101Ala
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3238A>G
  hgvsp: ENSP00000362895.4:p.Thr1080Ala
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3301A>G
  hgvsp: ENSP00000276072.3:p.Thr1101Ala
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr1101Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-70613944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613944
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613944
    reference: chr 0
allele count: 1
allele frequency: 1.299258123611418e-5
allele num: 76967
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3252A>G
  hgvsp: ENST00000373790.4:c.3252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3252A>G
  hgvsp: ENST00000449580.1:c.3252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3315A>G
  hgvsp: ENST00000276072.3:c.3315A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3315A>G
  hgvsp: ENST00000423759.1:c.3315A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10525
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser1105Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

X-70613956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613956
    reference: chr 0
allele count: 1
allele frequency: 1.246199092767061e-5
allele num: 80244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3327C>T
  hgvsp: ENST00000423759.1:c.3327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3327C>T
  hgvsp: ENST00000276072.3:c.3327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3264C>T
  hgvsp: ENST00000373790.4:c.3264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3264C>T
  hgvsp: ENST00000449580.1:c.3264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7472
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
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genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38315
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genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
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genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 26
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genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1109Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

X-70613960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613960
    reference: chr 0
allele count: 1
allele frequency: 1.22869745782496e-5
allele num: 81387
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3268A>G
  hgvsp: ENSP00000389000.1:p.Ser1090Gly
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.3A>G
  hgvsp: ENSP00000424526.1:p.Ser2Gly
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3331A>G
  hgvsp: ENSP00000276072.3:p.Ser1111Gly
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3331A>G
  hgvsp: ENSP00000406549.1:p.Ser1111Gly
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3268A>G
  hgvsp: ENSP00000362895.4:p.Ser1090Gly
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 608
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genotype quality: GenotypeQuality
  all individuals: 233
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 566
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genotype quality: GenotypeQuality
  all individuals: 508
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genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1111Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-70613963-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613963
    reference: chr 0
allele count: 1
allele frequency: 1.218783897427147e-5
allele num: 82049
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3334T>C
  hgvsp: ENSP00000276072.3:p.Ser1112Pro
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3271T>C
  hgvsp: ENSP00000362895.4:p.Ser1091Pro
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3271T>C
  hgvsp: ENSP00000389000.1:p.Ser1091Pro
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.6T>C
  hgvsp: ENSP00000424526.1:p.Ser3Pro
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3334T>C
  hgvsp: ENSP00000406549.1:p.Ser1112Pro
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
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genotype depth: GenotypeDepth
  all individuals: 39554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 2095
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 461
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3333
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genotype quality: GenotypeQuality
  all individuals: 754
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 10
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 191
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 887
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser1112Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

X-70613998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070613998
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070613998
    reference: chr 0
allele count: 2
allele frequency: 2.306911506874596e-5
allele num: 86696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.41G>A
  hgvsp: ENST00000483985.2:c.41G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3306G>A
  hgvsp: ENST00000449580.1:c.3306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3306G>A
  hgvsp: ENST00000373790.4:c.3306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3369G>A
  hgvsp: ENST00000423759.1:c.3369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3369G>A
  hgvsp: ENST00000276072.3:c.3369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 2442
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
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genotype depth: GenotypeDepth
  all individuals: 42815
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genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
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genotype depth: GenotypeDepth
  all individuals: 119
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 232
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys1123Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-70614016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614016
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614016
    reference: chr 0
allele count: 11
allele frequency: 1.259676606660254e-4
allele num: 87324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3387G>A
  hgvsp: ENST00000423759.1:c.3387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3324G>A
  hgvsp: ENST00000373790.4:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.59G>A
  hgvsp: ENST00000483985.2:c.59G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3387G>A
  hgvsp: ENST00000276072.3:c.3387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3324G>A
  hgvsp: ENST00000449580.1:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2509
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 205
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genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 355
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genotype depth: GenotypeDepth
  all individuals: 428
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 203
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 96
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 87
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genotype quality: GenotypeQuality
  all individuals: 3788
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 481
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 503
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Leu1129Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-70614048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614048
    reference: chr 0
allele count: 1
allele frequency: 1.149782116288963e-5
allele num: 86973
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.91G>A
  hgvsp: ENSP00000424526.1:p.Arg31His
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3356G>A
  hgvsp: ENSP00000389000.1:p.Arg1119His
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3419G>A
  hgvsp: ENSP00000406549.1:p.Arg1140His
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3356G>A
  hgvsp: ENSP00000362895.4:p.Arg1119His
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3419G>A
  hgvsp: ENSP00000276072.3:p.Arg1140His
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11654
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 84
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1140His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

X-70614053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614053
    reference: chr 0
allele count: 1
allele frequency: 1.151516547292785e-5
allele num: 86842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3361C>T
  hgvsp: ENSP00000362895.4:p.Arg1121Trp
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3361C>T
  hgvsp: ENSP00000389000.1:p.Arg1121Trp
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.96C>T
  hgvsp: ENSP00000424526.1:p.Arg33Trp
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3424C>T
  hgvsp: ENSP00000276072.3:p.Arg1142Trp
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3424C>T
  hgvsp: ENSP00000406549.1:p.Arg1142Trp
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 355
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genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 479
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 165
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 471
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 101
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1142Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-70614057-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614057
    reference: chr 0
allele count: 1
allele frequency: 1.153735217767522e-5
allele num: 86675
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3365A>T
  hgvsp: ENSP00000362895.4:p.Glu1122Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3365A>T
  hgvsp: ENSP00000389000.1:p.Glu1122Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.100A>T
  hgvsp: ENSP00000424526.1:p.Glu34Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3428A>T
  hgvsp: ENSP00000276072.3:p.Glu1143Val
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3428A>T
  hgvsp: ENSP00000406549.1:p.Glu1143Val
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu1143Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-70614084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614084
    reference: chr 0
allele count: 1
allele frequency: 1.16989166803154e-5
allele num: 85478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.127G>A
  hgvsp: ENSP00000424526.1:p.Arg43Gln
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3392G>A
  hgvsp: ENSP00000389000.1:p.Arg1131Gln
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3392G>A
  hgvsp: ENSP00000362895.4:p.Arg1131Gln
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3455G>A
  hgvsp: ENSP00000276072.3:p.Arg1152Gln
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3455G>A
  hgvsp: ENSP00000406549.1:p.Arg1152Gln
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47165
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1152Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

X-70614085-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614085
    reference: chr 0
allele count: 3
allele frequency: 3.508936090577337e-5
allele num: 85496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3393A>T
  hgvsp: ENST00000449580.1:c.3393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3456A>T
  hgvsp: ENST00000276072.3:c.3456A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3456A>T
  hgvsp: ENST00000423759.1:c.3456A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3393A>T
  hgvsp: ENST00000373790.4:c.3393A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.128A>T
  hgvsp: ENST00000483985.2:c.128A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3583
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 228
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1152Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

X-70614091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614091
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614091
    reference: chr 0
allele count: 56
allele frequency: 6.574081682964911e-4
allele num: 85183
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.134A>G
  hgvsp: ENST00000483985.2:c.134A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3462A>G
  hgvsp: ENST00000423759.1:c.3462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3399A>G
  hgvsp: ENST00000373790.4:c.3399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3399A>G
  hgvsp: ENST00000449580.1:c.3399A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3462A>G
  hgvsp: ENST00000276072.3:c.3462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39100
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10995
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4077
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Leu1154Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

X-70614102-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614102
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614102
    reference: chr 0
allele count: 8
allele frequency: 9.484404083035958e-5
allele num: 84349
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+7A>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+7A>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+7A>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+7A>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+7A>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 205
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3466+7A>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-70614103-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614103
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614103
    reference: chr 0
allele count: 1
allele frequency: 1.186985886737807e-5
allele num: 84247
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+8T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+8T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+8T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+8T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+8T>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 420
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genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3466+8T>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-70614106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614106
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614106
    reference: chr 0
allele count: 1
allele frequency: 1.191809882487546e-5
allele num: 83906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+11T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+11T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+11T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+11T>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+11T>C
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 199
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 542
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

X-70614109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614109
    reference: chr 0
allele count: 1
allele frequency: 1.198078282434974e-5
allele num: 83467
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+14C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+14C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+14C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+14C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+14C>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 442
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-70614123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614123
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614123
    reference: chr 0
allele count: 2
allele frequency: 2.454680461970863e-5
allele num: 81477
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+28A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+28A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+28A>G
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annotation: Annotation
  canonical: false
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
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site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
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X-70614132-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614132
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614132
    reference: chr 0
allele count: 1
allele frequency: 1.25203455615375e-5
allele num: 79870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+37A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+37A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+37A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  ensembl protein: ENSP00000276072
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  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+37A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: FS
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site quality: QD
site quality: InbreedingCoeff
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X-70614133-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614133
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 79815
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+38A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+38A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000147133
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  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+38A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  hgvsc: ENST00000423759.1:c.3466+38A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
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site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
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X-70614140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614140
    reference: chr 0
allele count: 2
allele frequency: 2.558755421363049e-5
allele num: 78163
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+45A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+45A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  ensembl protein: ENSP00000406549
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  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3466+45A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+45A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
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site quality: BaseQRankSum
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site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-70614145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614145
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614145
    reference: chr 0
allele count: 1
allele frequency: 1.304393196285088e-5
allele num: 76664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3403+50G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+50G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000147133
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
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site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
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site quality: QD
site quality: FS

X-70614147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070614147
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070614147
    reference: chr 0
allele count: 2
allele frequency: 2.634629571082306e-5
allele num: 75912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3466+52A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.138+52A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  ensembl gene: ENSG00000147133
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  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3403+52A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000147133
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
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site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
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site quality: QD

X-70617053-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617053
    reference: chr 0
allele count: 2
allele frequency: 4.428109639994686e-5
allele num: 45166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-53A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-50A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
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  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-50A>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-50A>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-70617054-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617054
    reference: chr 0
allele count: 1
allele frequency: 2.209212415773777e-5
allele num: 45265
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-49T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-52T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-49T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
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  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
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  gene symbol: TAF1
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  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
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  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-49T>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
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site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
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site quality: BaseQRankSum

X-70617066-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617066
    reference: chr 0
allele count: 1
allele frequency: 2.148181564305815e-5
allele num: 46551
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-40G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-37G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-37G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-37G>C
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-37G>C
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
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num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-70617072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617072
    reference: chr 0
allele count: 15
allele frequency: 3.110032966349443e-4
allele num: 48231
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-31C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-34C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-31C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-31C>T
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-31C>T
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-70617073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617073
    reference: chr 0
allele count: 2
allele frequency: 4.085634907664651e-5
allele num: 48952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-30G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-30G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-30G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
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  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-30G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-33G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

X-70617077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617077
    reference: chr 0
allele count: 1
allele frequency: 1.96649099347125e-5
allele num: 50852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-29G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-26G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-26G>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-70617089-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617089
    reference: chr 0
allele count: 1
allele frequency: 1.680418088020299e-5
allele num: 59509
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-14T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-14T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-14T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-17T>G
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-14T>G
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 320
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23507
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

X-70617097-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617097
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617097
    reference: chr 0
allele count: 1
allele frequency: 1.485376468665983e-5
allele num: 67323
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3404-6T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3467-6T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3467-6T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3404-6T>A
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.139-9T>A
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
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  variant carriers: 0
hgvs: c.3467-6T>A
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-70617122-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617122
    reference: chr 0
allele count: 1
allele frequency: 1.251689781204626e-5
allele num: 79892
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3486C>T
  hgvsp: ENST00000276072.3:c.3486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3423C>T
  hgvsp: ENST00000449580.1:c.3423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3486C>T
  hgvsp: ENST00000423759.1:c.3486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3423C>T
  hgvsp: ENST00000373790.4:c.3423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.155C>T
  hgvsp: ENST00000483985.2:c.155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
hgvs: p.Ser1162Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

X-70617123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617123
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617123
    reference: chr 0
allele count: 1
allele frequency: 1.243533625149224e-5
allele num: 80416
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3487G>A
  hgvsp: ENSP00000276072.3:p.Gly1163Arg
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3487G>A
  hgvsp: ENSP00000406549.1:p.Gly1163Arg
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3424G>A
  hgvsp: ENSP00000362895.4:p.Gly1142Arg
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3424G>A
  hgvsp: ENSP00000389000.1:p.Gly1142Arg
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.156G>A
  hgvsp: ENSP00000424526.1:p.Gly53Arg
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1163Arg
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

X-70617128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617128
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617128
    reference: chr 0
allele count: 1
allele frequency: 1.220152030943055e-5
allele num: 81957
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3429C>T
  hgvsp: ENST00000373790.4:c.3429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.161C>T
  hgvsp: ENST00000483985.2:c.161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3492C>T
  hgvsp: ENST00000276072.3:c.3492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3429C>T
  hgvsp: ENST00000449580.1:c.3429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3492C>T
  hgvsp: ENST00000423759.1:c.3492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5633
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 101
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genotype depth: GenotypeDepth
  all individuals: 202
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genotype depth: GenotypeDepth
  all individuals: 38775
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genotype depth: GenotypeDepth
  all individuals: 2844
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 88
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genotype depth: GenotypeDepth
  all individuals: 757
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41877
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn1164Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

X-70617140-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617140
    reference: chr 0
allele count: 1
allele frequency: 1.18900409017407e-5
allele num: 84104
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.173T>C
  hgvsp: ENST00000483985.2:c.173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3441T>C
  hgvsp: ENST00000373790.4:c.3441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3504T>C
  hgvsp: ENST00000276072.3:c.3504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3504T>C
  hgvsp: ENST00000423759.1:c.3504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3441T>C
  hgvsp: ENST00000449580.1:c.3441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp1168Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-70617167-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617167
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617167
    reference: chr 0
allele count: 1
allele frequency: 1.151543067710732e-5
allele num: 86840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3468T>C
  hgvsp: ENST00000449580.1:c.3468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3468T>C
  hgvsp: ENST00000373790.4:c.3468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.200T>C
  hgvsp: ENST00000483985.2:c.200T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3531T>C
  hgvsp: ENST00000423759.1:c.3531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3531T>C
  hgvsp: ENST00000276072.3:c.3531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1177Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

X-70617179-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617179
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617179
    reference: chr 0
allele count: 1
allele frequency: 1.145462251291509e-5
allele num: 87301
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3543C>A
  hgvsp: ENST00000423759.1:c.3543C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.212C>A
  hgvsp: ENST00000483985.2:c.212C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3480C>A
  hgvsp: ENST00000373790.4:c.3480C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3480C>A
  hgvsp: ENST00000449580.1:c.3480C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3543C>A
  hgvsp: ENST00000276072.3:c.3543C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1181Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-70617194-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617194
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617194
    reference: chr 0
allele count: 9
allele frequency: 1.026799466064278e-4
allele num: 87651
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3558C>G
  hgvsp: ENST00000423759.1:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3495C>G
  hgvsp: ENST00000449580.1:c.3495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3495C>G
  hgvsp: ENST00000373790.4:c.3495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.227C>G
  hgvsp: ENST00000483985.2:c.227C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3558C>G
  hgvsp: ENST00000276072.3:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1186Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-70617209-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617209
    reference: chr 0
allele count: 7
allele frequency: 7.978299026647519e-5
allele num: 87738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.242G>T
  hgvsp: ENST00000483985.2:c.242G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3510G>T
  hgvsp: ENST00000449580.1:c.3510G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3510G>T
  hgvsp: ENST00000373790.4:c.3510G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3573G>T
  hgvsp: ENST00000276072.3:c.3573G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3573G>T
  hgvsp: ENST00000423759.1:c.3573G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr1191Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-70617213-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070617213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070617213
    reference: chr 0
allele count: 2
allele frequency: 2.279462046956918e-5
allele num: 87740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000362895
  ensembl transcript: ENST00000373790
  gene symbol: TAF1
  hgvsc: ENST00000373790.4:c.3514C>A
  hgvsp: ENST00000373790.4:c.3514C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000276072
  ensembl transcript: ENST00000276072
  gene symbol: TAF1
  hgvsc: ENST00000276072.3:c.3577C>A
  hgvsp: ENST00000276072.3:c.3577C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000406549
  ensembl transcript: ENST00000423759
  gene symbol: TAF1
  hgvsc: ENST00000423759.1:c.3577C>A
  hgvsp: ENST00000423759.1:c.3577C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000424526
  ensembl transcript: ENST00000483985
  gene symbol: TAF1
  hgvsc: ENST00000483985.2:c.246C>A
  hgvsp: ENST00000483985.2:c.246C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147133
  ensembl protein: ENSP00000389000
  ensembl transcript: ENST00000449580
  gene symbol: TAF1
  hgvsc: ENST00000449580.1:c.3514C>A
  hgvsp: ENST00000449580.1:c.3514C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11535
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1193Arg
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8915
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8353
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.509e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQ
type: SiteQuality
SIO_000300: 5.753e1

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.43e-1

FS
type: SiteQuality
SIO_000300: 9.481999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.324e0

VQSLOD
type: SiteQuality
SIO_000300: -1.461e0

DP
type: SiteQuality
SIO_000300: 3.228086e6

GenotypeQuality
all individuals: 1182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 495
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4813
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8235
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7567
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41179
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.349e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.049e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 1.217856e6

MQ
type: SiteQuality
SIO_000300: 6.08e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

GenotypeQuality
all individuals: 1192
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41233
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4789
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7575
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 2.241379310344827e-3
allele num: 5800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8231
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 501
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.242824e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 1024
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4019
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 8.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.780173948425818e-4
allele num: 39322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.272727272727273e-4
allele num: 4400
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 8.263324610935132e-4
allele num: 7261
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3865
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.780626780626781e-4
allele num: 5616
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.859017236943658e-4
allele num: 7774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.292064e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.679999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.809e1

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2487
bin: 9.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.17464424320828e-4
allele num: 3865
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.28633907898122e-4
allele num: 7774
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.131662305467566e-4
allele num: 7261
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.034484512486649e-4
allele num: 39322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.272727272727273e-4
allele num: 4400
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.809e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.679999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.292064e6

GenotypeQuality
all individuals: 16946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 9.75e1
variant carriers: 16

South Asian
type: Population
allele count: 2
allele frequency: 4.545454545454545e-4
allele num: 4400
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.131662305467566e-4
allele num: 7261
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.814658460912466e-4
allele num: 39322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3865
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.424501424501425e-3
allele num: 5616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.809e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

DP
type: SiteQuality
SIO_000300: 1.292064e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.679999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.679999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQ
type: SiteQuality
SIO_000300: 5.809e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.292064e6

GenotypeQuality
all individuals: 943
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.712834171845714e-4
allele num: 40548
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.290822253775655e-4
allele num: 7747
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 8.588605782994561e-4
allele num: 6986
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.242681374628765e-4
allele num: 4714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.577319587628866e-4
allele num: 3880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.77430801987225e-4
allele num: 5636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 1.34304e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.8e0

QD
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 5.21e0

MQ
type: SiteQuality
SIO_000300: 5.744e1

GenotypeQuality
all individuals: 952
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42023
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8387
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 499
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.645852626008731e-4
allele num: 7559
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4033
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.425e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

FS
type: SiteQuality
SIO_000300: 8.419e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 1.369511e6

GenotypeQuality
all individuals: 1444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8647
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.226581782114271e-5
allele num: 43353
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.804e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.887e1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 3.061e0

DP
type: SiteQuality
SIO_000300: 1.452378e6

GenotypeQuality
all individuals: 849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.19785050220884e-5
allele num: 45499
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8233
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.745e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.215e0

FS
type: SiteQuality
SIO_000300: 1.173e0

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.726e1

DP
type: SiteQuality
SIO_000300: 1.517338e6

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.448700586831753e-5
allele num: 46521
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.578217e6

FS
type: SiteQuality
SIO_000300: 3.486e0

MQ
type: SiteQuality
SIO_000300: 5.494e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.769e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.761e0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46593
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6603
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.494768310911809e-4
allele num: 6690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.706484641638225e-3
allele num: 586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

DP
type: SiteQuality
SIO_000300: 1.58127e6

QD
type: SiteQuality
SIO_000300: 2.072e1

FS
type: SiteQuality
SIO_000300: 8.73e-1

MQ
type: SiteQuality
SIO_000300: 5.706e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47103
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8455
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.335648457326032e-4
allele num: 7487
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.52e-2

FS
type: SiteQuality
SIO_000300: 2.202e0

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.475e1

DP
type: SiteQuality
SIO_000300: 1.604686e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.103890092781553e-5
allele num: 47531
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

DP
type: SiteQuality
SIO_000300: 1.6287e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.31e0

MQ
type: SiteQuality
SIO_000300: 5.731e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 3.097e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2487
bin: 9.75e1
variant carriers: 10

South Asian
type: Population
allele count: 1
allele frequency: 1.137009664582149e-4
allele num: 8795
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.311652831774719e-4
allele num: 47585
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.465e1

VQSLOD
type: SiteQuality
SIO_000300: 1.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

FS
type: SiteQuality
SIO_000300: 1.866e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.061e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.633407e6

QD
type: SiteQuality
SIO_000300: 2.134e1

GenotypeQuality
all individuals: 2479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5783
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099164532516059e-5
allele num: 47638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.907e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

DP
type: SiteQuality
SIO_000300: 1.637831e6

FS
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.488e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.65e0

GenotypeQuality
all individuals: 786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.19533478771606e-5
allele num: 47672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.381e0

MQ
type: SiteQuality
SIO_000300: 5.796e1

DP
type: SiteQuality
SIO_000300: 1.640527e6

QD
type: SiteQuality
SIO_000300: 1.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.43e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.594e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 46295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.095996646405366e-5
allele num: 47710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.718e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.17e-2

MQ
type: SiteQuality
SIO_000300: 5.518e1

DP
type: SiteQuality
SIO_000300: 1.644187e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

QD
type: SiteQuality
SIO_000300: 2.38e1

GenotypeQuality
all individuals: 782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175778953556731e-4
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 5.013e1

FS
type: SiteQuality
SIO_000300: 7.81e-1

DP
type: SiteQuality
SIO_000300: 1.643752e6

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.076310407921645e-4
allele num: 9291
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 1.643752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.12e-2

MQ
type: SiteQuality
SIO_000300: 5.013e1

QD
type: SiteQuality
SIO_000300: 1.485e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47347
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.21758188238159e-4
allele num: 8213
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.610837e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

MQ
type: SiteQuality
SIO_000300: 5.159e1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e-1

QD
type: SiteQuality
SIO_000300: 3.131e1

GenotypeQuality
all individuals: 5245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8389
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.228660574994428e-4
allele num: 4487
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.5667e6

QD
type: SiteQuality
SIO_000300: 3.114e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.482e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5027
bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6515
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.180026596324475e-5
allele num: 45871
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6371
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.549e1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 3.378e1

DP
type: SiteQuality
SIO_000300: 1.531853e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.564945226917058e-3
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8909
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5637
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 1.421151e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.67e1

MQ
type: SiteQuality
SIO_000300: 5.789e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6389
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4321
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.775985905949315e-5
allele num: 44274
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8903
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5599
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 2.322e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.231000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.419605e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6299
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5275
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.14038088721633e-4
allele num: 8769
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.329872e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.326e1

VQSLOD
type: SiteQuality
SIO_000300: -1.907e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 3.75e1
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GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5243
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.311604253351826e-5
allele num: 43260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6283
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.312543e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.819e1

FS
type: SiteQuality
SIO_000300: 2.683e0

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.393861892583121e-4
allele num: 6256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43015
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.272838e6

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

QD
type: SiteQuality
SIO_000300: 1.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

GenotypeQuality
all individuals: 1114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.324770428920144e-5
allele num: 43015
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.298322224775914e-4
allele num: 8702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.242152466367713e-3
allele num: 8028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.79e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

QD
type: SiteQuality
SIO_000300: 1.974e1

DP
type: SiteQuality
SIO_000300: 1.272838e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

GenotypeQuality
all individuals: 682
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.425241917881309e-5
allele num: 41233
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7845
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4717
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.156086e6

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

FS
type: SiteQuality
SIO_000300: 5.336e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

GenotypeQuality
all individuals: 4044
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 327
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.8216595318335e-4
allele num: 21958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5401
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 7.02976e5

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

FS
type: SiteQuality
SIO_000300: 1.443e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
all individuals: 173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3277
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.520795660036166e-5
allele num: 22120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3765
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3899
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

DP
type: SiteQuality
SIO_000300: 7.25386e5

MQRankSum
type: SiteQuality
SIO_000300: 2.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.141e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.453e0

FS
type: SiteQuality
SIO_000300: 2.308e0

VQSLOD
type: SiteQuality
SIO_000300: -1.628e0

QD
type: SiteQuality
SIO_000300: 1.582e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 379
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.721e1

DP
type: SiteQuality
SIO_000300: 9.15507e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 1.132502831257078e-3
allele num: 30905
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5675
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.627339300244101e-4
allele num: 6145
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 423
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3133
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4649
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.143e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.84e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.015971e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
all individuals: 442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 513
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3793
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38428
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.776198934280639e-4
allele num: 5630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7573
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -1.919e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.489e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 1.208377e6

GenotypeQuality
all individuals: 727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 559
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8017
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8427
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.405002405002405e-5
allele num: 41580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.351e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.815e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.054e1

DP
type: SiteQuality
SIO_000300: 1.295229e6

GenotypeQuality
all individuals: 741
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40162
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.297952524300848e-5
allele num: 43517
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.685e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 6.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.381e0

DP
type: SiteQuality
SIO_000300: 1.35237e6

QD
type: SiteQuality
SIO_000300: 1.008e1

MQ
type: SiteQuality
SIO_000300: 5.912e1

GenotypeQuality
all individuals: 593
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6261
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8189
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8747
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.677e-1

QD
type: SiteQuality
SIO_000300: 2.865e1

DP
type: SiteQuality
SIO_000300: 1.372406e6

GenotypeQuality
all individuals: 42866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6299
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.240544900519806e-5
allele num: 44632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8805
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.884e-1

QD
type: SiteQuality
SIO_000300: 2.868e1

MQ
type: SiteQuality
SIO_000300: 5.827e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.385408e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

GenotypeQuality
all individuals: 606
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.167316861725184e-4
allele num: 9228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.673e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.539e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 3.293e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.636e0

DP
type: SiteQuality
SIO_000300: 1.484655e6

QD
type: SiteQuality
SIO_000300: 1.485e1

GenotypeQuality
all individuals: 917
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 858
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.100330099029709e-3
allele num: 9997
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.727e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.547e-1

FS
type: SiteQuality
SIO_000300: 1.851e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 2.182e1

DP
type: SiteQuality
SIO_000300: 1.500571e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.609999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
all individuals: 3766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507840772014475e-4
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.679e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

DP
type: SiteQuality
SIO_000300: 1.492117e6

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.050640890943476e-4
allele num: 9518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.489444e6

VQSLOD
type: SiteQuality
SIO_000300: -2.803e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

FS
type: SiteQuality
SIO_000300: 3.677e0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4525
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47725
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508295625942685e-4
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 7.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: -8.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.279e0

DP
type: SiteQuality
SIO_000300: 1.483654e6

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.080030240846744e-4
allele num: 9259
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.452677e6

QD
type: SiteQuality
SIO_000300: 1.886e1

FS
type: SiteQuality
SIO_000300: 7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.229e0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

GenotypeQuality
all individuals: 364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47329
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.474635163307853e-4
allele num: 8634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.49e-2

DP
type: SiteQuality
SIO_000300: 1.452121e6

QD
type: SiteQuality
SIO_000300: 3.184e1

MQ
type: SiteQuality
SIO_000300: 5.89e1

GenotypeQuality
all individuals: 3465
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.183992422448496e-4
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47294
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.163565556036348e-4
allele num: 9244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.514921981517952e-4
allele num: 6601
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 6.140040146416342e-3
allele num: 8469
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4513
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.568e0

VQSLOD
type: SiteQuality
SIO_000300: 1.488e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.446e-1

DP
type: SiteQuality
SIO_000300: 1.443567e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 2.075e1

GenotypeQuality
all individuals: 387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
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variant carriers: 1

GenotypeQuality
all individuals: 791
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9201
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8421
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6565
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 9.831633280078652e-4
allele num: 8137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.203e1

VQSLOD
type: SiteQuality
SIO_000300: -1.712e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 1.413716e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.868e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6563
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8413
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9197
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.235177865612648e-4
allele num: 8096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.5e1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.409291e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 403
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GenotypeQuality
all individuals: 2191
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8393
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7973
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.090155892292598e-4
allele num: 9173
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6549
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.393704e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 3.136e1

GenotypeQuality
all individuals: 3159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 758
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.193887297039159e-4
allele num: 8376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7807
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46531
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.256e1

VQSLOD
type: SiteQuality
SIO_000300: -1.622e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.786e0

DP
type: SiteQuality
SIO_000300: 1.37518e6

FS
type: SiteQuality
SIO_000300: 6.305e0

MQRankSum
type: SiteQuality
SIO_000300: -1.48e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.104606207886888e-4
allele num: 9053
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6383
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189477371751363e-5
allele num: 45673
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

DP
type: SiteQuality
SIO_000300: 1.255158e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.493e0

QD
type: SiteQuality
SIO_000300: 2.371e1

FS
type: SiteQuality
SIO_000300: 2.175e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 1149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3980
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.224545636553734e-5
allele num: 44953
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8207
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.195801e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

QD
type: SiteQuality
SIO_000300: 3.079e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.457e0

VQSLOD
type: SiteQuality
SIO_000300: -3.917e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.883e0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6235
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44921
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8965
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.195855e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 5.196e0

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 5.15e0

MQ
type: SiteQuality
SIO_000300: 3.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4361
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8083
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6187
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.539161616849368e-5
allele num: 44061
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.72e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.114e0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

DP
type: SiteQuality
SIO_000300: 1.178052e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.38e-1

QD
type: SiteQuality
SIO_000300: 2.239e1

GenotypeQuality
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5919
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.248751248751249e-4
allele num: 8008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4318
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.601e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.35e-1

DP
type: SiteQuality
SIO_000300: 1.179558e6

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1960
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.512247205124984e-4
allele num: 7961
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42815
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5785
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 533
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.188763e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -5.619e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeQuality
all individuals: 3751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5581
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5887
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2947
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.19672131147541e-5
allele num: 24400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.638e1

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 3.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.783e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

DP
type: SiteQuality
SIO_000300: 8.04995e5

GenotypeQuality
all individuals: 1162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24431
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.628120893561104e-4
allele num: 3805
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2963
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.728e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

DP
type: SiteQuality
SIO_000300: 8.06249e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.365e0

QD
type: SiteQuality
SIO_000300: 1.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 373
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.989149513323759e-5
allele num: 25068
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.164e0

DP
type: SiteQuality
SIO_000300: 8.64757e5

QD
type: SiteQuality
SIO_000300: 1.701e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 3.289e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.382086707956169e-4
allele num: 4198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3239
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.84644972690207e-5
allele num: 25998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.274317704688594e-3
allele num: 5716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.728e1

QD
type: SiteQuality
SIO_000300: 1.754e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.641e0

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

DP
type: SiteQuality
SIO_000300: 9.12472e5

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.79204429107732e-5
allele num: 26371
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3291
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5791
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4313
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.597954618088846e-4
allele num: 6258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 1.314e0

MQ
type: SiteQuality
SIO_000300: 5.738e1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-2

DP
type: SiteQuality
SIO_000300: 9.33125e5

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15375
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 403
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5963
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3455
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.656975681111721e-5
allele num: 27345
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 4.559e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 9.7741e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

VQSLOD
type: SiteQuality
SIO_000300: -2.667e0

QD
type: SiteQuality
SIO_000300: 2.792e1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7111
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2981
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.136664471001537e-5
allele num: 31881
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.309e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.108661e6

MQ
type: SiteQuality
SIO_000300: 5.616e1

QD
type: SiteQuality
SIO_000300: 1.916e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7299
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 489
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5091
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7721
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.759610343019566e-5
allele num: 36237
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.368e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 1.214553e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.758e0

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8527
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.294472615469334e-5
allele num: 43583
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9023
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 7.508e0

QD
type: SiteQuality
SIO_000300: 2.257e1

DP
type: SiteQuality
SIO_000300: 1.409686e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 591
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.279358132749818e-5
allele num: 43872
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9085
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4091
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.877e0

DP
type: SiteQuality
SIO_000300: 1.419706e6

MQ
type: SiteQuality
SIO_000300: 5.801e1

QD
type: SiteQuality
SIO_000300: 2.997e1

FS
type: SiteQuality
SIO_000300: 3.746e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6231
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44745
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.077470100204719e-4
allele num: 9281
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8741
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.693e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.189e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.577e1

DP
type: SiteQuality
SIO_000300: 1.444592e6

VQSLOD
type: SiteQuality
SIO_000300: -1.117e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.176420658584891e-5
allele num: 45947
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8297
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4331
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

DP
type: SiteQuality
SIO_000300: 1.484384e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.872e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106549261654484e-5
allele num: 47471
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6593
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9242
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4478
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.705e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4503
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47730
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510345869204048e-4
allele num: 6621
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Other
type: Population
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.234e0

ReadPosRankSum
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47938
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Latino
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Other
type: Population
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allele num: 632
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African
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allele count: 8
allele frequency: 9.400705052878966e-4
allele num: 8510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4523
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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Latino
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allele frequency: 1.073306858430825e-4
allele num: 9317
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South Asian
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allele frequency: 9.880446596186147e-5
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European (Non-Finnish)
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allele count: 5
allele frequency: 1.041948861149895e-4
allele num: 47987
num of homozygotes: 0

European (Finnish)
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allele count: 0
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allele num: 4529
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0