17-47696415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696415
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696415
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.408C>T
  hgvsp: ENST00000514121.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.408C>T
  hgvsp: ENST00000505581.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.408C>T
  hgvsp: ENST00000393331.3:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.408C>T
  hgvsp: ENST00000504102.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.408C>T
  hgvsp: ENST00000393328.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.408C>T
  hgvsp: ENST00000347630.2:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.127C>T
  hgvsp: ENST00000509869.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.408C>T
  hgvsp: ENST00000503676.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.408C>T
  hgvsp: ENST00000507970.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.408C>T
  hgvsp: ENST00000509079.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*351C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe136Phe
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-47696445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696445
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696445
    reference: chr 17
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.378G>A
  hgvsp: ENST00000507970.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.378G>A
  hgvsp: ENST00000514121.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.97G>A
  hgvsp: ENST00000509869.1:c.97G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.378G>A
  hgvsp: ENST00000347630.2:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.378G>A
  hgvsp: ENST00000393328.2:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*321G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.378G>A
  hgvsp: ENST00000503676.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.378G>A
  hgvsp: ENST00000393331.3:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.378G>A
  hgvsp: ENST00000509079.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.378G>A
  hgvsp: ENST00000505581.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.378G>A
  hgvsp: ENST00000504102.1:c.378G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25441
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val126Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-47696451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696451
    reference: chr 17
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.372G>A
  hgvsp: ENST00000504102.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.91G>A
  hgvsp: ENST00000509869.1:c.91G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.372G>A
  hgvsp: ENST00000509079.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.372G>A
  hgvsp: ENST00000505581.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.372G>A
  hgvsp: ENST00000393328.2:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.372G>A
  hgvsp: ENST00000503676.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.372G>A
  hgvsp: ENST00000393331.3:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.372G>A
  hgvsp: ENST00000347630.2:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.372G>A
  hgvsp: ENST00000507970.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.372G>A
  hgvsp: ENST00000514121.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*315G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg124Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-47696478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696478
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696478
    reference: chr 17
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-8C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-8C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.353-8C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

17-47696481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696481
    reference: chr 17
allele count: 4
allele frequency: 3.331612000466426e-5
allele num: 120062
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25659
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51311
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15938
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66172
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11540
  num of homozygotes: 0
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-47696481-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696482
    reference: chr 17
allele count: 165
allele frequency: 1.374289950192401e-3
allele num: 120062
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-12dupT
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25659
  bin: 9.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

17-47696481-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696481
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696480
    reference: chr 17
allele count: 165
allele frequency: 1.374289950192401e-3
allele num: 120062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-12delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-12delT
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 25659
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 5
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-47696482-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696482
    reference: chr 17
allele count: 26
allele frequency: 2.180293501048218e-4
allele num: 119250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-12T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25554
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

17-47696502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696502
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-32C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25565
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-47696507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696507
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696507
    reference: chr 17
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-37G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-47696508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696508
    reference: chr 17
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-38C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-47696515-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696515
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-45G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-45G>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-47696515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696515
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-45G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-47696518-G-GAAAGTGGAAAGCTGAGATGCCCAACAACCTTGAAATCATCAGGTAGCTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696518
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696568
    reference: chr 17
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: GAAAGTGGAAAGCTGAGATGCCCAACAACCTTGAAATCATCAGGTAGCTCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

17-47696520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696520
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696520
    reference: chr 17
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-50A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-50A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

17-47696521-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696521
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696521
    reference: chr 17
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*296-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.72-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.353-51G>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25566
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-47696553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696553
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696553
    reference: chr 17
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+43A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-47696556-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696556
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+40T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+40T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-47696562-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696562
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696562
    reference: chr 17
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+34T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+34T>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

17-47696565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696565
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696565
    reference: chr 17
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+31A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+31A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

17-47696566-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696566
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696566
    reference: chr 17
allele count: 4
allele frequency: 3.295110056675893e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+30A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7616
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-47696568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696568
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696568
    reference: chr 17
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+28T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20605
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-47696571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696571
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696571
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+25C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

17-47696572-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696572
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696572
    reference: chr 17
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+24A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+24A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-47696574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696574
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+22C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-47696578-A-ATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696578
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696580
    reference: chr 17
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: ATC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+17_*295+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+17_352+18insGA
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+17_71+18insGA
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

17-47696581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696581
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696581
    reference: chr 17
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+15C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-47696586-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696586
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696585
    reference: chr 17
allele count: 4843
allele frequency: 3.989948920744769e-2
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*295+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.71+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.352+9delT
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 6.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 17936
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 2394
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 20593
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 7.75e1
  variant carriers: 2
num of homozygotes: 130
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: GA
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-47696606-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696606
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696606
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.342C>G
  hgvsp: ENST00000393328.2:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.342C>G
  hgvsp: ENST00000507970.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.342C>G
  hgvsp: ENST00000393331.3:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*285C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.342C>G
  hgvsp: ENST00000503676.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.342C>G
  hgvsp: ENST00000505581.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.342C>G
  hgvsp: ENST00000509079.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.342C>G
  hgvsp: ENST00000504102.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.342C>G
  hgvsp: ENST00000514121.1:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.342C>G
  hgvsp: ENST00000515508.2:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.342C>G
  hgvsp: ENST00000347630.2:c.342C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423284
  ensembl transcript: ENST00000509869
  gene symbol: SPOP
  hgvsc: ENST00000509869.1:c.61C>G
  hgvsp: ENST00000509869.1:c.61C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr114Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

17-47696698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696698
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696698
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.250C>T
  hgvsp: ENST00000504102.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.250C>T
  hgvsp: ENST00000507970.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.250C>T
  hgvsp: ENST00000515508.2:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.250C>T
  hgvsp: ENST00000347630.2:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.250C>T
  hgvsp: ENST00000393331.3:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.250C>T
  hgvsp: ENST00000505581.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.250C>T
  hgvsp: ENST00000509079.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*193C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.250C>T
  hgvsp: ENST00000393328.2:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*193C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.250C>T
  hgvsp: ENST00000503676.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.250C>T
  hgvsp: ENST00000514121.1:c.250C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.547C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu84Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-47696732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696732
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696732
    reference: chr 17
allele count: 32
allele frequency: 2.652651822869174e-4
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.216C>T
  hgvsp: ENST00000504102.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*159C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.216C>T
  hgvsp: ENST00000503676.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.216C>T
  hgvsp: ENST00000393328.2:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.216C>T
  hgvsp: ENST00000515508.2:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.216C>T
  hgvsp: ENST00000514121.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*159C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.216C>T
  hgvsp: ENST00000393331.3:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.216C>T
  hgvsp: ENST00000505581.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.216C>T
  hgvsp: ENST00000507970.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.216C>T
  hgvsp: ENST00000509079.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.513C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.216C>T
  hgvsp: ENST00000347630.2:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Asn72Asn
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-47696758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696758
    reference: chr 17
allele count: 6
allele frequency: 5.230946278181723e-5
allele num: 114702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-11G>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

17-47696760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696760
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696760
    reference: chr 17
allele count: 1
allele frequency: 8.77162204834918e-6
allele num: 114004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-13C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-13C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

17-47696762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696762
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696762
    reference: chr 17
allele count: 1
allele frequency: 8.823166104925091e-6
allele num: 113338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-15A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-47696764-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696764
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696765
    reference: chr 17
allele count: 1098
allele frequency: 1.461505696943882e-2
allele num: 75128
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-18dupT
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 2.25e1
  variant carriers: 428
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 13574
  bin: 2.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 1.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 1.75e1
  variant carriers: 296
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-47696764-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696764
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696763
    reference: chr 17
allele count: 1610
allele frequency: 2.143009264189117e-2
allele num: 75128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-18delT
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-18delT
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 3.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 2.25e1
  variant carriers: 536
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 1.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 1.75e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 3.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: GA
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-47696790-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696790
    reference: chr 17
allele count: 1
allele frequency: 1.053407774149373e-5
allele num: 94930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-43A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-43A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21239
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/17-47696799-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47696799
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47696799
    reference: chr 17
allele count: 1
allele frequency: 1.115150433793519e-5
allele num: 89674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*144-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.498-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*144-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.201-52T>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-47699258-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699258
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699258
    reference: chr 17
allele count: 1
allele frequency: 8.426303549159055e-6
allele num: 118676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+50T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

17-47699263-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699263
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699263
    reference: chr 17
allele count: 1
allele frequency: 8.40279645065878e-6
allele num: 119008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+45C>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-47699265-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699265
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699265
    reference: chr 17
allele count: 1
allele frequency: 8.400961069946402e-6
allele num: 119034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+43G>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-47699274-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699274
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699274
    reference: chr 17
allele count: 3
allele frequency: 2.510754398004787e-5
allele num: 119486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+34T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+34T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

17-47699280-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699280
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699280
    reference: chr 17
allele count: 27
allele frequency: 2.255526038795048e-4
allele num: 119706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+28A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+28A>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21846
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26703
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

17-47699283-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699283
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699283
    reference: chr 17
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+25A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+25A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-47699285-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699285
    reference: chr 17
allele count: 1
allele frequency: 8.3380582329987e-6
allele num: 119932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+23G>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

17-47699285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699285
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699285
    reference: chr 17
allele count: 2
allele frequency: 1.66761164659974e-5
allele num: 119932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+23G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22225
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-47699288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699288
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699288
    reference: chr 17
allele count: 1
allele frequency: 8.320159747067144e-6
allele num: 120190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+20A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-47699289-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699289
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699289
    reference: chr 17
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+19A>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22508
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

17-47699293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699293
    reference: chr 17
allele count: 19
allele frequency: 1.576711146517958e-4
allele num: 120504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+15G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22698
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27891
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-47699294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699294
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699294
    reference: chr 17
allele count: 3
allele frequency: 2.487026014292109e-5
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+14C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-47699297-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699297
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699297
    reference: chr 17
allele count: 1
allele frequency: 8.279790686891435e-6
allele num: 120776
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*143+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.447+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*143+11A>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.200+11A>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

17-47699326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699326
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699326
    reference: chr 17
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.182C>T
  hgvsp: ENSP00000425905.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.182C>T
  hgvsp: ENSP00000240327.2:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.182C>T
  hgvsp: ENSP00000426262.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.182C>T
  hgvsp: ENSP00000420908.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.182C>T
  hgvsp: ENSP00000377004.3:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.182C>T
  hgvsp: ENSP00000424119.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.429C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.182C>T
  hgvsp: ENSP00000425410.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.182C>T
  hgvsp: ENSP00000426986.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.182C>T
  hgvsp: ENSP00000420960.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.182C>T
  hgvsp: ENSP00000377001.2:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.182C>T
  hgvsp: ENSP00000426537.2:p.Ala61Val
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala61Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-47699328-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699328
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699328
    reference: chr 17
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*123A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.180A>G
  hgvsp: ENST00000347630.2:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.180A>G
  hgvsp: ENST00000514121.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.180A>G
  hgvsp: ENST00000503676.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.180A>G
  hgvsp: ENST00000504102.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.180A>G
  hgvsp: ENST00000515508.2:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.180A>G
  hgvsp: ENST00000507970.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.180A>G
  hgvsp: ENST00000393328.2:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.180A>G
  hgvsp: ENST00000393331.3:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.180A>G
  hgvsp: ENST00000505581.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.180A>G
  hgvsp: ENST00000509079.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*123A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.427A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.180A>G
  hgvsp: ENST00000510476.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly60Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

17-47699340-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699340
    reference: chr 17
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.168A>G
  hgvsp: ENST00000504102.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.168A>G
  hgvsp: ENST00000507970.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.168A>G
  hgvsp: ENST00000514121.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.168A>G
  hgvsp: ENST00000393331.3:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.168A>G
  hgvsp: ENST00000509079.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.168A>G
  hgvsp: ENST00000503676.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.168A>G
  hgvsp: ENST00000510476.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*111A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*111A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.168A>G
  hgvsp: ENST00000515508.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.168A>G
  hgvsp: ENST00000505581.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.168A>G
  hgvsp: ENST00000347630.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.168A>G
  hgvsp: ENST00000393328.2:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.415A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr56Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-47699376-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699376
    reference: chr 17
allele count: 6
allele frequency: 4.951802456094018e-5
allele num: 121168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.132C>T
  hgvsp: ENST00000507970.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.132C>T
  hgvsp: ENST00000515508.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.132C>T
  hgvsp: ENST00000510476.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.132C>T
  hgvsp: ENST00000514121.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.132C>T
  hgvsp: ENST00000509079.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.132C>T
  hgvsp: ENST00000393328.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.132C>T
  hgvsp: ENST00000393331.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.132C>T
  hgvsp: ENST00000504102.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.132C>T
  hgvsp: ENST00000503676.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*75C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.132C>T
  hgvsp: ENST00000505581.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.379C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.132C>T
  hgvsp: ENST00000347630.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys44Cys
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-47699409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699409
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699409
    reference: chr 17
allele count: 1
allele frequency: 8.317253310266817e-6
allele num: 120232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.99C>T
  hgvsp: ENST00000503676.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.99C>T
  hgvsp: ENST00000347630.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.99C>T
  hgvsp: ENST00000393328.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.99C>T
  hgvsp: ENST00000393331.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.99C>T
  hgvsp: ENST00000509079.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.99C>T
  hgvsp: ENST00000515508.2:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.99C>T
  hgvsp: ENST00000504102.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.99C>T
  hgvsp: ENST00000514121.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.99C>T
  hgvsp: ENST00000510476.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.346C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.99C>T
  hgvsp: ENST00000507970.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.99C>T
  hgvsp: ENST00000505581.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.99C>T
  hgvsp: ENST00000508805.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser33Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

17-47699435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699435
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699435
    reference: chr 17
allele count: 1
allele frequency: 8.573535211509113e-6
allele num: 116638
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-6C>T
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.79-6C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-47699440-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699440
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699440
    reference: chr 17
allele count: 1
allele frequency: 8.649321893163576e-6
allele num: 115616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-11T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

17-47699440-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699440
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699440
    reference: chr 17
allele count: 4
allele frequency: 3.45972875726543e-5
allele num: 115616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-11T>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-11T>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19590
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8067
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-47699450-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699450
    reference: chr 17
allele count: 2
allele frequency: 1.74926093725401e-5
allele num: 114334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-21T>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15982
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-47699452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699452
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699452
    reference: chr 17
allele count: 1
allele frequency: 8.779939594015594e-6
allele num: 113896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-23G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-23G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-47699461-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699461
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699460
    reference: chr 17
allele count: 3
allele frequency: 2.657548323087008e-5
allele num: 112886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-33delC
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-33delC
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: AG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

17-47699472-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699472
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699472
    reference: chr 17
allele count: 1
allele frequency: 9.139264106454148e-6
allele num: 109418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-43T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-47699474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699474
    reference: chr 17
allele count: 15
allele frequency: 1.372620790629575e-4
allele num: 109280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*22-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*22-45G>A
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-45G>A
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15669
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-47699556-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699556
    reference: chr 17
allele count: 1
allele frequency: 6.188118811881188e-5
allele num: 16160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*21+12C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*21+12C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-127C>G
  variant of: http://identifiers.org/hgnc/11254
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-47699572-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699572
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699572
    reference: chr 17
allele count: 15
allele frequency: 1.047486033519553e-3
allele num: 14320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000502385
  gene symbol: SPOP
  hgvsc: ENST00000502385.1:n.570A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426537
  ensembl transcript: ENST00000515508
  gene symbol: SPOP
  hgvsc: ENST00000515508.2:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*17A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425604
  ensembl transcript: ENST00000506399
  gene symbol: SPOP
  hgvsc: ENST00000506399.1:c.*17A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377004
  ensembl transcript: ENST00000393331
  gene symbol: SPOP
  hgvsc: ENST00000393331.3:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000377001
  ensembl transcript: ENST00000393328
  gene symbol: SPOP
  hgvsc: ENST00000393328.2:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000423076
  ensembl transcript: ENST00000451526
  gene symbol: SPOP
  hgvsc: ENST00000451526.2:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425410
  ensembl transcript: ENST00000510476
  gene symbol: SPOP
  hgvsc: ENST00000510476.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420908
  ensembl transcript: ENST00000503676
  gene symbol: SPOP
  hgvsc: ENST00000503676.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000424119
  ensembl transcript: ENST00000514121
  gene symbol: SPOP
  hgvsc: ENST00000514121.1:c.79-143A>G
  variant of: http://identifiers.org/hgnc/11254
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-47699580-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47699580
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 47699580
    reference: chr 17
allele count: 10
allele frequency: 7.230657989877079e-4
allele num: 13830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000502385
  gene symbol: SPOP
  hgvsc: ENST00000502385.1:n.562T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000420960
  ensembl transcript: ENST00000505581
  gene symbol: SPOP
  hgvsc: ENST00000505581.1:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000240327
  ensembl transcript: ENST00000347630
  gene symbol: SPOP
  hgvsc: ENST00000347630.2:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000425905
  ensembl transcript: ENST00000504102
  gene symbol: SPOP
  hgvsc: ENST00000504102.1:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426986
  ensembl transcript: ENST00000509079
  gene symbol: SPOP
  hgvsc: ENST00000509079.1:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000422609
  ensembl transcript: ENST00000504212
  gene symbol: SPOP
  hgvsc: ENST00000504212.1:c.*9T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000427419
  ensembl transcript: ENST00000508805
  gene symbol: SPOP
  hgvsc: ENST00000508805.1:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl transcript: ENST00000513080
  gene symbol: SPOP
  hgvsc: ENST00000513080.1:n.326-151T>C
  variant of: http://identifiers.org/hgnc/11254
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000121067
  ensembl protein: ENSP00000426262
  ensembl transcript: ENST00000507970
  gene symbol: SPOP
  hgvsc: ENST00000507970.1:c.79-151T>C
  variant of: http://identifiers.org/hgnc/11254
canonical: false
consequence: 3' UTR
filter: PASS
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 3948
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.552e0

QD
type: SiteQuality
SIO_000300: 1.284e1

DP
type: SiteQuality
SIO_000300: 5.339806e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.737e0

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeDepth
all individuals: 830
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51483
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 493
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 5.340561e6

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.223e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.463e0

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeDepth
all individuals: 517
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.339e0

DP
type: SiteQuality
SIO_000300: 5.340433e6

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.021e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeDepth
all individuals: 3948
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51487
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 2.018e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.231e1

DP
type: SiteQuality
SIO_000300: 5.341774e6

MQ
type: SiteQuality
SIO_000300: 5.898e1

African
type: Population
allele count: 4
allele frequency: 3.887269193391642e-4
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

FS
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 5.398464e6

QD
type: SiteQuality
SIO_000300: 5.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51311
bin: 9.75e1
variant carriers: 160

GenotypeQuality
all individuals: 294
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 148
allele frequency: 1.438289601554908e-2
allele num: 10290
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.13715648136529e-4
allele num: 15938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.665511265164644e-4
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.9e0

FS
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 5.398464e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

GenotypeQuality
all individuals: 600
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 12

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 294
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 51311
bin: 9.75e1
variant carriers: 56

GenotypeQuality
all individuals: 3857
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 959
bin: 6.75e1
variant carriers: 6

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.019450370184465e-4
allele num: 15938
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.161170459823502e-3
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 133
allele frequency: 2.009913558604848e-3
allele num: 66172
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.718172983479105e-4
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

FS
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 5.398464e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

QD
type: SiteQuality
SIO_000300: 5.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
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GenotypeQuality
all individuals: 128
bin: 5.75e1
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GenotypeQuality
all individuals: 51108
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
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GenotypeQuality
all individuals: 603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.5e0
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GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
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GenotypeQuality
all individuals: 301
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004419445560466e-4
allele num: 9956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.085130982444397e-5
allele num: 65734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.250468925847193e-3
allele num: 15994
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.886e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.376161e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 4141
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

FS
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 5.398379e6

MQRankSum
type: SiteQuality
SIO_000300: -1.153e0

QD
type: SiteQuality
SIO_000300: 1.173e1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 803
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 52168
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variant carriers: 1

GenotypeQuality
all individuals: 4137
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 627
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variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 94
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GenotypeQuality
all individuals: 1165
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

MQ
type: SiteQuality
SIO_000300: 6.031e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 5.398901e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 810
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 627
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 437
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GenotypeQuality
all individuals: 1164
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
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GenotypeQuality
all individuals: 52172
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.399189e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.026e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.311e0

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1171
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.399989e6

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.858e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.037e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 56
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52181
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.037e0

FS
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 1.003e1

VQSLOD
type: SiteQuality
SIO_000300: -3.858e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 5.399989e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.033e1

DP
type: SiteQuality
SIO_000300: 5.400304e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.8648e2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.826e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 5.400426e6

QD
type: SiteQuality
SIO_000300: 1.792e1

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQRankSum
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SIO_000300: 1.57e0

DP
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SIO_000300: 5.400612e6

QD
type: SiteQuality
SIO_000300: 1.026e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.796e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 2.182e0

VQSLOD
type: SiteQuality
SIO_000300: -1.401e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 2.306203e6

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

FS
type: SiteQuality
SIO_000300: 1.766e0

QD
type: SiteQuality
SIO_000300: 1.261e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 2.306199e6

GenotypeQuality
all individuals: 2016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7618
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 32836
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.306153e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.51e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994305409860632e-5
allele num: 66730
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 2.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.305893e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.638e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10040
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.17e0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.305908e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.694e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.305683e6

MQRankSum
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SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.849e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 840
bin: 8.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 2014
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.30594e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 1.995e0

QD
type: SiteQuality
SIO_000300: 1.492e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.173e0

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 2740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3154
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 8.041e0

VQSLOD
type: SiteQuality
SIO_000300: -6.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 2.305938e6

QD
type: SiteQuality
SIO_000300: 1.131e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2737
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7609
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1225
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variant carriers: 0

GenotypeQuality
all individuals: 2011
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variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.351e0

DP
type: SiteQuality
SIO_000300: 2.306172e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.371e0

FS
type: SiteQuality
SIO_000300: 1.8385e1

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 6.005e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.498e0

GenotypeQuality
all individuals: 32771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7608
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9999
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 3138
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.97e-1

DP
type: SiteQuality
SIO_000300: 2.306642e6

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 9994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 3137
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 9.25e1
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GenotypeQuality
all individuals: 2007
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variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

FS
type: SiteQuality
SIO_000300: 3.393e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.558e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.523e1

DP
type: SiteQuality
SIO_000300: 2.306818e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 1035
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 1

GenotypeQuality
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variant carriers: 4705

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 2691
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 263
allele frequency: 2.272334542941075e-2
allele num: 11574
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 129
allele frequency: 1.950408224977321e-2
allele num: 6614
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3684
allele frequency: 5.520920752907325e-2
allele num: 66728
num of homozygotes: 102

African
type: Population
allele count: 110
allele frequency: 1.057488944433763e-2
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 43
allele frequency: 4.73568281938326e-2
allele num: 908
num of homozygotes: 1

South Asian
type: Population
allele count: 613
allele frequency: 3.713801042045317e-2
allele num: 16506
num of homozygotes: 22

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.004e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.96e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

DP
type: SiteQuality
SIO_000300: 2.359509e6

GenotypeDepth
all individuals: 134
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19448
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variant carriers: 0

GenotypeDepth
all individuals: 7023
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 10741
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2894
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variant carriers: 0

GenotypeQuality
all individuals: 2011
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variant carriers: 0

GenotypeQuality
all individuals: 797
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GenotypeQuality
all individuals: 1097
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GenotypeQuality
all individuals: 3291
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variant carriers: 0

GenotypeQuality
all individuals: 35566
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 4165
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e0

VQSLOD
type: SiteQuality
SIO_000300: -6.74e-2

QD
type: SiteQuality
SIO_000300: 1.499e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

DP
type: SiteQuality
SIO_000300: 2.015323e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.251e0

GenotypeDepth
all individuals: 4151
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variant carriers: 0

GenotypeDepth
all individuals: 21
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variant carriers: 0

GenotypeDepth
all individuals: 91
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variant carriers: 0

GenotypeDepth
all individuals: 110
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variant carriers: 0

GenotypeDepth
all individuals: 270
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.014102e6

ReadPosRankSum
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MQRankSum
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SIO_000300: 8.54e-1

MQ
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.405e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
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allele count: 32
allele frequency: 1.946235251185987e-3
allele num: 16442
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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SIO_000300: -2.636e0

ClippingRankSum
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SIO_000300: -3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.68e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2485
bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10826
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.086636697997548e-4
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.251721116535236e-4
allele num: 15978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.289e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 4.14e0

DP
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SIO_000300: 1.683612e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1794
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62326
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

FS
type: SiteQuality
SIO_000300: 6.926e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -8.61e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.542e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2690
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GenotypeQuality
all individuals: 870
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.614517743550002e-5
allele num: 61938
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.017e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -3.86e-1

QD
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SIO_000300: 1.773e1

DP
type: SiteQuality
SIO_000300: 1.632342e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
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SIO_000300: 4.35e0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 1592
bin: 4.75e1
variant carriers: 86

African
type: Population
allele count: 167
allele frequency: 2.376209447922596e-2
allele num: 7028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 430
allele frequency: 1.043334789149318e-2
allele num: 41214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 2.013693113169553e-3
allele num: 4966
num of homozygotes: 0

South Asian
type: Population
allele count: 343
allele frequency: 3.524455404849979e-2
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 54
allele frequency: 1.036468330134357e-2
allele num: 5210
num of homozygotes: 0

Latino
type: Population
allele count: 87
allele frequency: 1.369647355163728e-2
allele num: 6352
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 1.118210862619808e-2
allele num: 626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.261e0

MQRankSum
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SIO_000300: 1.16e-1

DP
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SIO_000300: 1.548172e6

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

VQSLOD
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SIO_000300: 1.83e0

GenotypeDepth
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variant carriers: 23

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 29

East Asian
type: Population
allele count: 106
allele frequency: 2.034548944337812e-2
allele num: 5210
num of homozygotes: 0

African
type: Population
allele count: 109
allele frequency: 1.550939100739898e-2
allele num: 7028
num of homozygotes: 0

Latino
type: Population
allele count: 126
allele frequency: 1.983627204030227e-2
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1036
allele frequency: 2.513708933857427e-2
allele num: 41214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 64
allele frequency: 1.288763592428514e-2
allele num: 4966
num of homozygotes: 0

South Asian
type: Population
allele count: 152
allele frequency: 1.561857788738183e-2
allele num: 9732
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 2.715654952076677e-2
allele num: 626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.261e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: -2.4e-2

DP
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SIO_000300: 1.548172e6

VQSLOD
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ClippingRankSum
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SIO_000300: -2.47e-1

InbreedingCoeff
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SIO_000300: 4.0e-2

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.202790473899447e-4
allele num: 8314
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 13594
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.1041999831664e-5
allele num: 47524
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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QD
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SIO_000300: 3.058e1

MQ
type: SiteQuality
SIO_000300: 6.018e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.741258741258741e-5
allele num: 11440
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65148
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -1.453e0

BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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QD
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MQRankSum
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SIO_000300: -6.34e-1

ReadPosRankSum
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SIO_000300: 4.9e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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SIO_000300: -6.04e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.530268715186387e-5
allele num: 65348
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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FS
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DP
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.967359050445104e-4
allele num: 10110
num of homozygotes: 0

Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 24
allele frequency: 2.372010278711208e-3
allele num: 10118
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.609603340292275e-4
allele num: 11496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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South Asian
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BaseQRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10138
num of homozygotes: 0

South Asian
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.222195062331948e-4
allele num: 16364
num of homozygotes: 0

African
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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Other
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66032
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South Asian
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European (Finnish)
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Other
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Latino
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African
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East Asian
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ReadPosRankSum
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DP
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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African
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East Asian
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FS
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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QD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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East Asian
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DP
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.52447742285766e-5
allele num: 66306
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Latino
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num of homozygotes: 0

East Asian
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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MQRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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African
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East Asian
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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FS
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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East Asian
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Latino
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African
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South Asian
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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MQ
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DP
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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Other
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African
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European (Non-Finnish)
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allele frequency: 1.514554872323024e-5
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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QD
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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African
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MQ
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FS
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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African
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ClippingRankSum
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MQRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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European (Non-Finnish)
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allele count: 0
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African
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allele num: 9298
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South Asian
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MQ
type: SiteQuality
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VQSLOD
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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African
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allele count: 1
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European (Non-Finnish)
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allele count: 8
allele frequency: 1.343860238535192e-4
allele num: 59530
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.828118964851294e-4
allele num: 10356
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

QD
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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SIO_000300: -1.774e0

ClippingRankSum
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SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.196024e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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East Asian
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European (Non-Finnish)
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Latino
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Other
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European (Finnish)
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South Asian
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allele num: 7816
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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Other
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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