19-50496174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496174
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496174
    reference: chr 19
allele count: 1
allele frequency: 8.291598951941893e-6
allele num: 120604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.906T>C
  hgvsp: ENST00000593919.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.756T>C
  hgvsp: ENST00000601341.1:c.756T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.928T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.756T>C
  hgvsp: ENST00000601912.1:c.756T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.906T>C
  hgvsp: ENST00000594948.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.*10T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.756T>C
  hgvsp: ENST00000377011.2:c.756T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.906T>C
  hgvsp: ENST00000316763.3:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.213T>C
  hgvsp: ENST00000443401.2:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.906T>C
  hgvsp: ENST00000599538.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.265T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.906T>C
  hgvsp: ENST00000594092.1:c.906T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*749T>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr302Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-50496177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496177
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496177
    reference: chr 19
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.903G>A
  hgvsp: ENST00000593919.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.903G>A
  hgvsp: ENST00000599538.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*746G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.262G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.210G>A
  hgvsp: ENST00000443401.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.753G>A
  hgvsp: ENST00000377011.2:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.753G>A
  hgvsp: ENST00000601912.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.753G>A
  hgvsp: ENST00000601341.1:c.753G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.903G>A
  hgvsp: ENST00000594092.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.903G>A
  hgvsp: ENST00000316763.3:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.903G>A
  hgvsp: ENST00000594948.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.925G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu301Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

19-50496183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496183
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496183
    reference: chr 19
allele count: 657
allele frequency: 5.449387876978203e-3
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.747G>A
  hgvsp: ENST00000377011.2:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.919G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.204G>A
  hgvsp: ENST00000443401.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.897G>A
  hgvsp: ENST00000316763.3:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*740G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.256G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.747G>A
  hgvsp: ENST00000601341.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.897G>A
  hgvsp: ENST00000594092.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.747G>A
  hgvsp: ENST00000601912.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.897G>A
  hgvsp: ENST00000593919.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.897G>A
  hgvsp: ENST00000599538.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.897G>A
  hgvsp: ENST00000594948.1:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: p.Glu299Glu
num of homozygotes: 6
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

19-50496198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496198
    reference: chr 19
allele count: 1
allele frequency: 8.300132802124834e-6
allele num: 120480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.882G>A
  hgvsp: ENST00000599538.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.580G>A
  hgvsp: ENSP00000472217.1:p.Gly194Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.882G>A
  hgvsp: ENST00000594092.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.241G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.189G>A
  hgvsp: ENST00000443401.2:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.882G>A
  hgvsp: ENST00000316763.3:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.732G>A
  hgvsp: ENST00000601341.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.730G>A
  hgvsp: ENSP00000469802.1:p.Gly244Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*725G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.882G>A
  hgvsp: ENST00000594948.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.882G>A
  hgvsp: ENST00000593919.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.732G>A
  hgvsp: ENST00000377011.2:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.904G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.732G>A
  hgvsp: ENST00000601912.1:c.732G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly244Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

19-50496200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496200
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496200
    reference: chr 19
allele count: 4
allele frequency: 3.320714617785747e-5
allele num: 120456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.880C>G
  hgvsp: ENSP00000473171.1:p.Leu294Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.730C>G
  hgvsp: ENSP00000470156.1:p.Leu244Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.902C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.728C>G
  hgvsp: ENSP00000469802.1:p.Pro243Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.187C>G
  hgvsp: ENSP00000414907.2:p.Leu63Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.730C>G
  hgvsp: ENSP00000471061.1:p.Leu244Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*723C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.239C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.880C>G
  hgvsp: ENSP00000472541.1:p.Leu294Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.880C>G
  hgvsp: ENSP00000469880.1:p.Leu294Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.880C>G
  hgvsp: ENSP00000469710.1:p.Leu294Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.578C>G
  hgvsp: ENSP00000472217.1:p.Pro193Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.880C>G
  hgvsp: ENSP00000324636.2:p.Leu294Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.730C>G
  hgvsp: ENSP00000366210.1:p.Leu244Val
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu294Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-50496203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496203
    reference: chr 19
allele count: 76
allele frequency: 6.310615118905274e-4
allele num: 120432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.727G>A
  hgvsp: ENSP00000366210.1:p.Ala243Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.727G>A
  hgvsp: ENSP00000471061.1:p.Ala243Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.184G>A
  hgvsp: ENSP00000414907.2:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.877G>A
  hgvsp: ENSP00000469880.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.575G>A
  hgvsp: ENSP00000472217.1:p.Cys192Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.877G>A
  hgvsp: ENSP00000473171.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.877G>A
  hgvsp: ENSP00000472541.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.877G>A
  hgvsp: ENSP00000324636.2:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.725G>A
  hgvsp: ENSP00000469802.1:p.Cys242Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*720G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.899G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.877G>A
  hgvsp: ENSP00000469710.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.727G>A
  hgvsp: ENSP00000470156.1:p.Ala243Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.236G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala293Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50496214-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496214
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496214
    reference: chr 19
allele count: 5
allele frequency: 4.154963519420299e-5
allele num: 120338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-5C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-5C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.871-5C>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50496215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496215
    reference: chr 19
allele count: 5
allele frequency: 4.155308822551692e-5
allele num: 120328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-6C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-6C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.871-6C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-50496220-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496220
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496220
    reference: chr 19
allele count: 10
allele frequency: 8.314487162431822e-5
allele num: 120272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-11T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-11T>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-50496223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496223
    reference: chr 19
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-14G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-14G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-50496226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496226
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496226
    reference: chr 19
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-17C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-17C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-50496230-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496230
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496230
    reference: chr 19
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-21C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-21C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

19-50496240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496240
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496240
    reference: chr 19
allele count: 1
allele frequency: 8.335000333400014e-6
allele num: 119976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-31C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-31C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/19-50496244-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496244
    reference: chr 19
allele count: 1
allele frequency: 8.342649291709075e-6
allele num: 119866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-35T>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-35T>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

19-50496244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496244
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496244
    reference: chr 19
allele count: 4
allele frequency: 3.33705971668363e-5
allele num: 119866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-35T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-35T>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-50496245-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496245
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496245
    reference: chr 19
allele count: 2
allele frequency: 1.669142561466175e-5
allele num: 119822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-36C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-36C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

19-50496249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496249
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496249
    reference: chr 19
allele count: 4
allele frequency: 3.350869550648393e-5
allele num: 119372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-40C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-40C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-50496252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496252
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496252
    reference: chr 19
allele count: 4
allele frequency: 3.356718472021751e-5
allele num: 119164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-43A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-43A>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

19-50496257-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496257
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496257
    reference: chr 19
allele count: 1
allele frequency: 8.444947387977773e-6
allele num: 118414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-48G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-48G>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-50496258-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50496258
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50496257
    reference: chr 19
allele count: 626
allele frequency: 5.286001384831034e-3
allele num: 118426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.719-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.871-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.871-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.721-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.871-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.871-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.721-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.871-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.230-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.178-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.893-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.569-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.721-50delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*714-50delC
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8195
  bin: 3.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
num of homozygotes: 15
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: AG
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-50498024-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498024
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498024
    reference: chr 19
allele count: 1
allele frequency: 8.59697386519945e-6
allele num: 116320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+47C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+47C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18818
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

19-50498026-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498026
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498026
    reference: chr 19
allele count: 4
allele frequency: 3.434006971034151e-5
allele num: 116482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+45A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+45A>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19823
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-50498031-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498031
    reference: chr 19
allele count: 6
allele frequency: 5.148888698189308e-5
allele num: 116530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+40G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+40G>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20953
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-50498037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498037
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498037
    reference: chr 19
allele count: 2003
allele frequency: 1.711380724538619e-2
allele num: 117040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+34A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+34A>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21768
  bin: 2.75e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 1.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 23271
  bin: 2.25e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 211
genotype quality: GenotypeQuality
num of homozygotes: 156
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-50498037-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498037
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498037
    reference: chr 19
allele count: 3
allele frequency: 2.563226247436774e-5
allele num: 117040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+34A>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+34A>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-50498041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498041
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498041
    reference: chr 19
allele count: 13
allele frequency: 1.108042685213597e-4
allele num: 117324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+30C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+30C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22204
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

19-50498041-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498041
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498041
    reference: chr 19
allele count: 1
allele frequency: 8.523405270873819e-6
allele num: 117324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+30C>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+30C>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

19-50498042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498042
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498042
    reference: chr 19
allele count: 1
allele frequency: 8.528348229514908e-6
allele num: 117256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+29G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+29G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-50498043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498043
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498043
    reference: chr 19
allele count: 2
allele frequency: 1.702098687681912e-5
allele num: 117502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+28C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+28C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

19-50498045-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498045
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498045
    reference: chr 19
allele count: 1
allele frequency: 8.502389171357152e-6
allele num: 117614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+26G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+26G>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

19-50498047-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498047
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498047
    reference: chr 19
allele count: 7
allele frequency: 5.937839305103149e-5
allele num: 117888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+24C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+24C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

19-50498051-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498051
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498051
    reference: chr 19
allele count: 1
allele frequency: 8.455515532782033e-6
allele num: 118266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+20T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+20T>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-50498059-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498059
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498059
    reference: chr 19
allele count: 2
allele frequency: 1.683870207284422e-5
allele num: 118774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+12G>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+12G>C
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

19-50498059-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498059
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498059
    reference: chr 19
allele count: 8
allele frequency: 6.73548082913769e-5
allele num: 118774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+12G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+12G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-50498066-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498066
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498066
    reference: chr 19
allele count: 2
allele frequency: 1.67796496409155e-5
allele num: 119192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+5G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+5G>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.870+5G>T
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-50498067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498067
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498067
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 119356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.870+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.718+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.720+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.177+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.229+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.892+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.720+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.870+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.870+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.720+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*713+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.870+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.870+4C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.568+4C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.870+4C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-50498075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498075
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498075
    reference: chr 19
allele count: 3
allele frequency: 2.499083669321249e-5
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.866G>A
  hgvsp: ENSP00000472541.1:p.Arg289Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.866G>A
  hgvsp: ENSP00000473171.1:p.Arg289Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.888G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.716G>A
  hgvsp: ENSP00000471061.1:p.Arg239Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.714G>A
  hgvsp: ENST00000596121.1:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.173G>A
  hgvsp: ENSP00000414907.2:p.Arg58Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.866G>A
  hgvsp: ENSP00000324636.2:p.Arg289Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.866G>A
  hgvsp: ENSP00000469710.1:p.Arg289Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.866G>A
  hgvsp: ENSP00000469880.1:p.Arg289Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.716G>A
  hgvsp: ENSP00000366210.1:p.Arg239Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.225G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.564G>A
  hgvsp: ENST00000596814.1:c.564G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.716G>A
  hgvsp: ENSP00000470156.1:p.Arg239Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*709G>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg289Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

19-50498076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498076
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498076
    reference: chr 19
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.172C>T
  hgvsp: ENSP00000414907.2:p.Arg58Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.715C>T
  hgvsp: ENSP00000471061.1:p.Arg239Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.865C>T
  hgvsp: ENSP00000472541.1:p.Arg289Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.865C>T
  hgvsp: ENSP00000469710.1:p.Arg289Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.715C>T
  hgvsp: ENSP00000470156.1:p.Arg239Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.887C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.563C>T
  hgvsp: ENSP00000472217.1:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*708C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.715C>T
  hgvsp: ENSP00000366210.1:p.Arg239Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.865C>T
  hgvsp: ENSP00000469880.1:p.Arg289Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.713C>T
  hgvsp: ENSP00000469802.1:p.Pro238Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.865C>T
  hgvsp: ENSP00000324636.2:p.Arg289Trp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.224C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.865C>T
  hgvsp: ENSP00000473171.1:p.Arg289Trp
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg289Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

19-50498078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498078
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498078
    reference: chr 19
allele count: 2063
allele frequency: 1.71582081607532e-2
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.863G>A
  hgvsp: ENSP00000473171.1:p.Cys288Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.863G>A
  hgvsp: ENSP00000469710.1:p.Cys288Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.863G>A
  hgvsp: ENSP00000472541.1:p.Cys288Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.222G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.711G>A
  hgvsp: ENST00000596121.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.170G>A
  hgvsp: ENSP00000414907.2:p.Cys57Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.561G>A
  hgvsp: ENST00000596814.1:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.863G>A
  hgvsp: ENSP00000469880.1:p.Cys288Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.713G>A
  hgvsp: ENSP00000470156.1:p.Cys238Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.885G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.863G>A
  hgvsp: ENSP00000324636.2:p.Cys288Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.713G>A
  hgvsp: ENSP00000471061.1:p.Cys238Tyr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*706G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.713G>A
  hgvsp: ENSP00000366210.1:p.Cys238Tyr
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24569
  bin: 2.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 26430
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys288Tyr
num of homozygotes: 171
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD

19-50498079-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498079
    reference: chr 19
allele count: 11
allele frequency: 9.142439202779301e-5
allele num: 120318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.862T>A
  hgvsp: ENSP00000473171.1:p.Cys288Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.862T>A
  hgvsp: ENSP00000469710.1:p.Cys288Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.221T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.712T>A
  hgvsp: ENSP00000471061.1:p.Cys238Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.862T>A
  hgvsp: ENSP00000324636.2:p.Cys288Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.560T>A
  hgvsp: ENSP00000472217.1:p.Leu187Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.712T>A
  hgvsp: ENSP00000366210.1:p.Cys238Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.862T>A
  hgvsp: ENSP00000472541.1:p.Cys288Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.710T>A
  hgvsp: ENSP00000469802.1:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.712T>A
  hgvsp: ENSP00000470156.1:p.Cys238Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*705T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.884T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.862T>A
  hgvsp: ENSP00000469880.1:p.Cys288Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.169T>A
  hgvsp: ENSP00000414907.2:p.Cys57Ser
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26491
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys288Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-50498080-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498080
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498080
    reference: chr 19
allele count: 24
allele frequency: 1.99395167990429e-4
allele num: 120364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.861C>G
  hgvsp: ENST00000594092.1:c.861C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.559C>G
  hgvsp: ENSP00000472217.1:p.Leu187Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.220C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*704C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.709C>G
  hgvsp: ENSP00000469802.1:p.Leu237Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.861C>G
  hgvsp: ENST00000599538.1:c.861C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.711C>G
  hgvsp: ENST00000601912.1:c.711C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.711C>G
  hgvsp: ENST00000601341.1:c.711C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.861C>G
  hgvsp: ENST00000594948.1:c.861C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.861C>G
  hgvsp: ENST00000316763.3:c.861C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.168C>G
  hgvsp: ENST00000443401.2:c.168C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.861C>G
  hgvsp: ENST00000593919.1:c.861C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.883C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.711C>G
  hgvsp: ENST00000377011.2:c.711C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24759
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu237Val
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

19-50498089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498089
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498089
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 120624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.211G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.852G>A
  hgvsp: ENST00000594948.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.852G>A
  hgvsp: ENST00000593919.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.702G>A
  hgvsp: ENST00000601912.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.874G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.159G>A
  hgvsp: ENST00000443401.2:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.702G>A
  hgvsp: ENST00000601341.1:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.700G>A
  hgvsp: ENSP00000469802.1:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.702G>A
  hgvsp: ENST00000377011.2:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.852G>A
  hgvsp: ENST00000316763.3:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.852G>A
  hgvsp: ENST00000594092.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.550G>A
  hgvsp: ENSP00000472217.1:p.Ala184Thr
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*695G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.852G>A
  hgvsp: ENST00000599538.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala234Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

19-50498105-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498105
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498105
    reference: chr 19
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.836C>G
  hgvsp: ENSP00000472541.1:p.Ser279Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.195C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.686C>G
  hgvsp: ENSP00000471061.1:p.Ser229Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.143C>G
  hgvsp: ENSP00000414907.2:p.Ser48Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.836C>G
  hgvsp: ENSP00000469710.1:p.Ser279Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.836C>G
  hgvsp: ENSP00000324636.2:p.Ser279Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.836C>G
  hgvsp: ENSP00000473171.1:p.Ser279Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.836C>G
  hgvsp: ENSP00000469880.1:p.Ser279Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.686C>G
  hgvsp: ENSP00000366210.1:p.Ser229Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*679C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.534C>G
  hgvsp: ENST00000596814.1:c.534C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.684C>G
  hgvsp: ENST00000596121.1:c.684C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.686C>G
  hgvsp: ENSP00000470156.1:p.Ser229Ter
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.858C>G
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser279Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-50498113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498113
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498113
    reference: chr 19
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.678T>C
  hgvsp: ENST00000601912.1:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.526T>C
  hgvsp: ENSP00000472217.1:p.Cys176Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.828T>C
  hgvsp: ENST00000594948.1:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.828T>C
  hgvsp: ENST00000316763.3:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.676T>C
  hgvsp: ENSP00000469802.1:p.Cys226Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.828T>C
  hgvsp: ENST00000594092.1:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.135T>C
  hgvsp: ENST00000443401.2:c.135T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.828T>C
  hgvsp: ENST00000593919.1:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*671T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.850T>C
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.678T>C
  hgvsp: ENST00000377011.2:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.828T>C
  hgvsp: ENST00000599538.1:c.828T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.678T>C
  hgvsp: ENST00000601341.1:c.678T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.187T>C
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys226Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-50498117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498117
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498117
    reference: chr 19
allele count: 3
allele frequency: 2.485295335929086e-5
allele num: 120710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.824A>G
  hgvsp: ENSP00000469710.1:p.Lys275Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.131A>G
  hgvsp: ENSP00000414907.2:p.Lys44Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.674A>G
  hgvsp: ENSP00000366210.1:p.Lys225Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.824A>G
  hgvsp: ENSP00000473171.1:p.Lys275Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.846A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.674A>G
  hgvsp: ENSP00000470156.1:p.Lys225Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.824A>G
  hgvsp: ENSP00000469880.1:p.Lys275Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.674A>G
  hgvsp: ENSP00000471061.1:p.Lys225Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.824A>G
  hgvsp: ENSP00000324636.2:p.Lys275Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.183A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*667A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.672A>G
  hgvsp: ENST00000596121.1:c.672A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.522A>G
  hgvsp: ENST00000596814.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.824A>G
  hgvsp: ENSP00000472541.1:p.Lys275Arg
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25152
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys275Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-50498123-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498123
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498123
    reference: chr 19
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.516G>T
  hgvsp: ENSP00000472217.1:p.Gln172His
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.666G>T
  hgvsp: ENSP00000469802.1:p.Gln222His
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.668G>T
  hgvsp: ENSP00000470156.1:p.Ser223Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.818G>T
  hgvsp: ENSP00000469880.1:p.Ser273Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.125G>T
  hgvsp: ENSP00000414907.2:p.Ser42Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*509G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.668G>T
  hgvsp: ENSP00000471061.1:p.Ser223Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*661G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.818G>T
  hgvsp: ENSP00000472541.1:p.Ser273Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.818G>T
  hgvsp: ENSP00000473171.1:p.Ser273Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.177G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.818G>T
  hgvsp: ENSP00000324636.2:p.Ser273Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.668G>T
  hgvsp: ENSP00000366210.1:p.Ser223Ile
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.840G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.818G>T
  hgvsp: ENSP00000469710.1:p.Ser273Ile
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser273Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-50498129-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498129
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498129
    reference: chr 19
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.812A>G
  hgvsp: ENSP00000469710.1:p.Asp271Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*503A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.812A>G
  hgvsp: ENSP00000324636.2:p.Asp271Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.812A>G
  hgvsp: ENSP00000472541.1:p.Asp271Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.119A>G
  hgvsp: ENSP00000414907.2:p.Asp40Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.662A>G
  hgvsp: ENSP00000471061.1:p.Asp221Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.510A>G
  hgvsp: ENST00000596814.1:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.662A>G
  hgvsp: ENSP00000470156.1:p.Asp221Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.834A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.171A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.662A>G
  hgvsp: ENSP00000366210.1:p.Asp221Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*655A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.660A>G
  hgvsp: ENST00000596121.1:c.660A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.812A>G
  hgvsp: ENSP00000473171.1:p.Asp271Gly
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.812A>G
  hgvsp: ENSP00000469880.1:p.Asp271Gly
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp271Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-50498131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498131
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498131
    reference: chr 19
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.660G>A
  hgvsp: ENST00000377011.2:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*653G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.810G>A
  hgvsp: ENST00000316763.3:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.660G>A
  hgvsp: ENST00000601912.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.810G>A
  hgvsp: ENST00000594948.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*501G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.832G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.810G>A
  hgvsp: ENST00000599538.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.508G>A
  hgvsp: ENSP00000472217.1:p.Gly170Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.810G>A
  hgvsp: ENST00000594092.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.169G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.117G>A
  hgvsp: ENST00000443401.2:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.658G>A
  hgvsp: ENSP00000469802.1:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.660G>A
  hgvsp: ENST00000601341.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.810G>A
  hgvsp: ENST00000593919.1:c.810G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly220Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-50498134-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498134
    reference: chr 19
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.807C>G
  hgvsp: ENST00000594948.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*650C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.505C>G
  hgvsp: ENSP00000472217.1:p.Pro169Ala
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.807C>G
  hgvsp: ENST00000594092.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.807C>G
  hgvsp: ENST00000593919.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.807C>G
  hgvsp: ENST00000316763.3:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.829C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.657C>G
  hgvsp: ENST00000601912.1:c.657C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*498C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.657C>G
  hgvsp: ENST00000601341.1:c.657C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.655C>G
  hgvsp: ENSP00000469802.1:p.Pro219Ala
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.114C>G
  hgvsp: ENST00000443401.2:c.114C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.166C>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.807C>G
  hgvsp: ENST00000599538.1:c.807C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.657C>G
  hgvsp: ENST00000377011.2:c.657C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro219Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-50498136-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498136
    reference: chr 19
allele count: 1
allele frequency: 8.306337735692333e-6
allele num: 120390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.655G>T
  hgvsp: ENSP00000471061.1:p.Ala219Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.805G>T
  hgvsp: ENSP00000472541.1:p.Ala269Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.805G>T
  hgvsp: ENSP00000324636.2:p.Ala269Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.827G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.655G>T
  hgvsp: ENSP00000366210.1:p.Ala219Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.805G>T
  hgvsp: ENSP00000469880.1:p.Ala269Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.805G>T
  hgvsp: ENSP00000469710.1:p.Ala269Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.653G>T
  hgvsp: ENSP00000469802.1:p.Gly218Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.655G>T
  hgvsp: ENSP00000470156.1:p.Ala219Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.805G>T
  hgvsp: ENSP00000473171.1:p.Ala269Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.503G>T
  hgvsp: ENSP00000472217.1:p.Gly168Val
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.112G>T
  hgvsp: ENSP00000414907.2:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*496G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.164G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*648G>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala269Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

19-50498137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498137
    reference: chr 19
allele count: 1
allele frequency: 8.310617645103384e-6
allele num: 120328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.826G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.163G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.804G>A
  hgvsp: ENST00000593919.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.111G>A
  hgvsp: ENST00000443401.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.652G>A
  hgvsp: ENSP00000469802.1:p.Gly218Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.804G>A
  hgvsp: ENST00000594092.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.502G>A
  hgvsp: ENSP00000472217.1:p.Gly168Ser
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.804G>A
  hgvsp: ENST00000599538.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*495G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.804G>A
  hgvsp: ENST00000594948.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.804G>A
  hgvsp: ENST00000316763.3:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.654G>A
  hgvsp: ENST00000601912.1:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.654G>A
  hgvsp: ENST00000377011.2:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*647G>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.654G>A
  hgvsp: ENST00000601341.1:c.654G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly218Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

19-50498138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498138
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498138
    reference: chr 19
allele count: 2058
allele frequency: 1.710609435781494e-2
allele num: 120308
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.803C>T
  hgvsp: ENSP00000469880.1:p.Ser268Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.653C>T
  hgvsp: ENSP00000471061.1:p.Ser218Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.803C>T
  hgvsp: ENSP00000469710.1:p.Ser268Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.110C>T
  hgvsp: ENSP00000414907.2:p.Ser37Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.825C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.653C>T
  hgvsp: ENSP00000470156.1:p.Ser218Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.803C>T
  hgvsp: ENSP00000473171.1:p.Ser268Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.803C>T
  hgvsp: ENSP00000472541.1:p.Ser268Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.651C>T
  hgvsp: ENST00000596121.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*646C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.653C>T
  hgvsp: ENSP00000366210.1:p.Ser218Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.803C>T
  hgvsp: ENSP00000324636.2:p.Ser268Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.501C>T
  hgvsp: ENST00000596814.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.162C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 25764
  bin: 2.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 3.25e1
  variant carriers: 223
genotype quality: GenotypeQuality
hgvs: p.Ser268Leu
num of homozygotes: 170
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-50498145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498145
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498145
    reference: chr 19
allele count: 2
allele frequency: 1.667500416875104e-5
allele num: 119940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.103C>T
  hgvsp: ENSP00000414907.2:p.Leu35Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.796C>T
  hgvsp: ENSP00000472541.1:p.Leu266Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.796C>T
  hgvsp: ENSP00000473171.1:p.Leu266Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.796C>T
  hgvsp: ENSP00000469880.1:p.Leu266Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.644C>T
  hgvsp: ENSP00000469802.1:p.Pro215Leu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*487C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*639C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.796C>T
  hgvsp: ENSP00000324636.2:p.Leu266Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.155C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.646C>T
  hgvsp: ENSP00000471061.1:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.818C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.646C>T
  hgvsp: ENSP00000366210.1:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.646C>T
  hgvsp: ENSP00000470156.1:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.796C>T
  hgvsp: ENSP00000469710.1:p.Leu266Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.494C>T
  hgvsp: ENSP00000472217.1:p.Pro165Leu
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu266Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-50498150-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498150
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498150
    reference: chr 19
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.641G>T
  hgvsp: ENSP00000366210.1:p.Arg214Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.641G>T
  hgvsp: ENSP00000470156.1:p.Arg214Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.791G>T
  hgvsp: ENSP00000469710.1:p.Arg264Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.791G>T
  hgvsp: ENSP00000472541.1:p.Arg264Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.791G>T
  hgvsp: ENSP00000469880.1:p.Arg264Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.150G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.98G>T
  hgvsp: ENSP00000414907.2:p.Arg33Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.489G>T
  hgvsp: ENSP00000472217.1:p.Glu163Asp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.639G>T
  hgvsp: ENSP00000469802.1:p.Glu213Asp
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.813G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*482G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.791G>T
  hgvsp: ENSP00000324636.2:p.Arg264Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.641G>T
  hgvsp: ENSP00000471061.1:p.Arg214Met
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*634G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.791G>T
  hgvsp: ENSP00000473171.1:p.Arg264Met
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg264Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-50498155-CAGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498155
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498152
    reference: chr 19
allele count: 1
allele frequency: 8.406186953597848e-6
allele num: 118960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.631_633delCCT
  hgvsp: ENSP00000469802.1:p.Pro211del
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.783_785delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.783_785delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.633_635delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.90_92delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.142_144delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.783_785delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.633_635delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.805_807delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.783_785delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.783_785delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.633_635delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*474_*476delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*626_*628delCCT
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.481_483delCCT
  hgvsp: ENSP00000472217.1:p.Pro161del
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser261_Leu262delinsArg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: CAGG
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

19-50498158-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498158
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498160
    reference: chr 19
allele count: 1
allele frequency: 8.428860418071477e-6
allele num: 118640
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.632_633insAA
  hgvsp: ENSP00000470156.1:p.Ser211ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.782_783insAA
  hgvsp: ENSP00000473171.1:p.Ser261ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.632_633insAA
  hgvsp: ENSP00000471061.1:p.Ser211ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.630_631insAA
  hgvsp: ENSP00000469802.1:p.Pro211AsnfsTer?
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.782_783insAA
  hgvsp: ENSP00000469880.1:p.Ser261ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.89_90insAA
  hgvsp: ENSP00000414907.2:p.Ser30ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*473_*474insAA
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.480_481insAA
  hgvsp: ENSP00000472217.1:p.Pro161AsnfsTer215
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.782_783insAA
  hgvsp: ENSP00000324636.2:p.Ser261ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.782_783insAA
  hgvsp: ENSP00000472541.1:p.Ser261ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.804_805insAA
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.782_783insAA
  hgvsp: ENSP00000469710.1:p.Ser261ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.632_633insAA
  hgvsp: ENSP00000366210.1:p.Ser211ArgfsTer48
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*625_*626insAA
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.141_142insAA
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 25109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser261ArgfsTer48
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

19-50498164-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498164
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498164
    reference: chr 19
allele count: 1
allele frequency: 8.498487269266071e-6
allele num: 117668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.799A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.627A>G
  hgvsp: ENST00000601341.1:c.627A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.627A>G
  hgvsp: ENST00000601912.1:c.627A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.475A>G
  hgvsp: ENSP00000472217.1:p.Thr159Ala
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.777A>G
  hgvsp: ENST00000594092.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*620A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.777A>G
  hgvsp: ENST00000593919.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.625A>G
  hgvsp: ENSP00000469802.1:p.Thr209Ala
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.84A>G
  hgvsp: ENST00000443401.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.627A>G
  hgvsp: ENST00000377011.2:c.627A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.777A>G
  hgvsp: ENST00000316763.3:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*468A>G
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.777A>G
  hgvsp: ENST00000599538.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.777A>G
  hgvsp: ENST00000594948.1:c.777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.136A>G
  variant of: http://identifiers.org/hgnc/18996
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr209Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-50498168-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498168
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498168
    reference: chr 19
allele count: 1
allele frequency: 8.553149269561053e-6
allele num: 116916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.621T>A
  hgvsp: ENST00000596121.1:c.621T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.80T>A
  hgvsp: ENSP00000414907.2:p.Val27Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.623T>A
  hgvsp: ENSP00000366210.1:p.Val208Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.773T>A
  hgvsp: ENSP00000472541.1:p.Val258Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.773T>A
  hgvsp: ENSP00000469710.1:p.Val258Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*464T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.471T>A
  hgvsp: ENST00000596814.1:c.471T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.773T>A
  hgvsp: ENSP00000473171.1:p.Val258Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.773T>A
  hgvsp: ENSP00000469880.1:p.Val258Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.132T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.773T>A
  hgvsp: ENSP00000324636.2:p.Val258Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.623T>A
  hgvsp: ENSP00000470156.1:p.Val208Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.623T>A
  hgvsp: ENSP00000471061.1:p.Val208Glu
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*616T>A
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.795T>A
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val258Glu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-50498170-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498170
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498170
    reference: chr 19
allele count: 1
allele frequency: 8.608518990392892e-6
allele num: 116164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.771G>T
  hgvsp: ENSP00000469880.1:p.Leu257Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.621G>T
  hgvsp: ENSP00000366210.1:p.Leu207Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.771G>T
  hgvsp: ENSP00000472541.1:p.Leu257Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.621G>T
  hgvsp: ENSP00000470156.1:p.Leu207Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*462G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.793G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.771G>T
  hgvsp: ENSP00000469710.1:p.Leu257Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.621G>T
  hgvsp: ENSP00000471061.1:p.Leu207Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.619G>T
  hgvsp: ENSP00000469802.1:p.Gly207Cys
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.771G>T
  hgvsp: ENSP00000473171.1:p.Leu257Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.130G>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.771G>T
  hgvsp: ENSP00000324636.2:p.Leu257Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.78G>T
  hgvsp: ENSP00000414907.2:p.Leu26Phe
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.469G>T
  hgvsp: ENSP00000472217.1:p.Gly157Cys
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*614G>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu257Phe
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-50498215-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498215
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498214
    reference: chr 19
allele count: 1
allele frequency: 1.000340115639317e-5
allele num: 99966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.765-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.615-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.765-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.615-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.765-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*608-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.765-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.615-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.765-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.787-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.124-40delC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-40delC
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

19-50498217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498217
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498217
    reference: chr 19
allele count: 1
allele frequency: 1.000640409862312e-5
allele num: 99936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.615-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*608-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.615-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.124-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.765-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.765-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.615-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.765-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.787-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.765-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-41C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.765-41C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22968
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

19-50498218-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498218
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498216
    reference: chr 19
allele count: 1
allele frequency: 1.011470070600611e-5
allele num: 98866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.765-44_765-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.615-44_615-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-44_*456-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.615-44_615-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.765-44_765-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-44_613-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.765-44_765-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-44_72-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.765-44_765-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.765-44_765-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.615-44_615-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.124-44_124-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*608-44_*608-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.787-44_787-43delTC
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-44_463-43delTC
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: GGA
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

19-50498223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498223
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 94644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.765-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.124-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.787-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.765-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.615-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.765-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.615-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.615-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.765-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.765-47C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*608-47C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

19-50498225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498225
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498225
    reference: chr 19
allele count: 2
allele frequency: 2.128565346956152e-5
allele num: 93960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*608-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.765-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.765-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.615-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.615-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.787-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.615-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.765-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.765-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.765-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.124-49C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-49C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21455
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-50498397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 50498397
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 50498397
    reference: chr 19
allele count: 1
allele frequency: 8.920288303717977e-6
allele num: 112104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000366210
  ensembl transcript: ENST00000377011
  gene symbol: VRK3
  hgvsc: ENST00000377011.2:c.614+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000414907
  ensembl transcript: ENST00000443401
  gene symbol: VRK3
  hgvsc: ENST00000443401.2:c.72-221C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000473171
  ensembl transcript: ENST00000594948
  gene symbol: VRK3
  hgvsc: ENST00000594948.1:c.764+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471661
  ensembl transcript: ENST00000599342
  gene symbol: VRK3
  hgvsc: ENST00000599342.1:c.*456-221C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469325
  ensembl transcript: ENST00000594090
  gene symbol: VRK3
  hgvsc: ENST00000594090.1:c.*607+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000324636
  ensembl transcript: ENST00000316763
  gene symbol: VRK3
  hgvsc: ENST00000316763.3:c.764+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469880
  ensembl transcript: ENST00000599538
  gene symbol: VRK3
  hgvsc: ENST00000599538.1:c.764+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472541
  ensembl transcript: ENST00000594092
  gene symbol: VRK3
  hgvsc: ENST00000594092.1:c.764+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000470156
  ensembl transcript: ENST00000601341
  gene symbol: VRK3
  hgvsc: ENST00000601341.1:c.614+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000600284
  gene symbol: VRK3
  hgvsc: ENST00000600284.1:n.123+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000471061
  ensembl transcript: ENST00000601912
  gene symbol: VRK3
  hgvsc: ENST00000601912.1:c.614+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469710
  ensembl transcript: ENST00000593919
  gene symbol: VRK3
  hgvsc: ENST00000593919.1:c.764+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl transcript: ENST00000424804
  gene symbol: VRK3
  hgvsc: ENST00000424804.2:n.786+51C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000472217
  ensembl transcript: ENST00000596814
  gene symbol: VRK3
  hgvsc: ENST00000596814.1:c.463-221C>T
  variant of: http://identifiers.org/hgnc/18996
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105053
  ensembl protein: ENSP00000469802
  ensembl transcript: ENST00000596121
  gene symbol: VRK3
  hgvsc: ENST00000596121.1:c.613-221C>T
  variant of: http://identifiers.org/hgnc/18996
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 9310
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 450
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1096
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 861
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7521
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8544
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1738
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

VQSLOD
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FS
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MQ
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MQRankSum
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SIO_000300: -7.8e-2

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: 1.61e0

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.54e0

QD
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SIO_000300: 1.42e1

DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
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FS
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SIO_000300: 4.159e0

MQRankSum
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SIO_000300: 1.52e0

QD
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SIO_000300: 1.235e1

DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 413

GenotypeQuality
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variant carriers: 650

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 298
allele frequency: 4.499743303234379e-3
allele num: 66226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
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allele count: 286
allele frequency: 1.734805289336407e-2
allele num: 16486
num of homozygotes: 4

Latino
type: Population
allele count: 59
allele frequency: 5.114424410540916e-3
allele num: 11536
num of homozygotes: 1

Other
type: Population
allele count: 6
allele frequency: 6.666666666666667e-3
allele num: 900
num of homozygotes: 1

African
type: Population
allele count: 8
allele frequency: 7.780587434351293e-4
allele num: 10282
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.636e0

ReadPosRankSum
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SIO_000300: 1.32e-1

MQRankSum
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SIO_000300: 3.08e-1

DP
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SIO_000300: 2.719175e6

FS
type: SiteQuality
SIO_000300: 2.016e0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2995
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

QD
type: SiteQuality
SIO_000300: 8.65e0

MQ
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SIO_000300: 5.876e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.761e0

MQRankSum
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SIO_000300: 2.48e-1

VQSLOD
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SIO_000300: -2.256e0

FS
type: SiteQuality
SIO_000300: 2.493e0

DP
type: SiteQuality
SIO_000300: 2.666936e6

BaseQRankSum
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SIO_000300: -2.793e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.045766452041957e-5
allele num: 66162
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
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SIO_000300: 2.59e0

ClippingRankSum
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SIO_000300: 2.13e-1

InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 75

GenotypeQuality
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Latino
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allele count: 3
allele frequency: 2.604618857440528e-4
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66144
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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num of homozygotes: 0

East Asian
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African
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allele count: 73
allele frequency: 7.112236944660951e-3
allele num: 10264
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.869922517022776e-4
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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SIO_000300: 2.65967e6

BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.053268765133172e-5
allele num: 66080
num of homozygotes: 0

South Asian
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Latino
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East Asian
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Other
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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FS
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QD
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 2.605976372480889e-4
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 9.083477155054956e-5
allele num: 66054
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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QD
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514600751241973e-5
allele num: 66024
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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MQ
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DP
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FS
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Other
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65824
num of homozygotes: 0

South Asian
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allele num: 16412
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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European (Non-Finnish)
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allele num: 65824
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South Asian
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65800
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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SIO_000300: 2.73e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 3
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allele num: 10118
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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allele num: 8448
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Latino
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VQSLOD
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65506
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East Asian
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African
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Other
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
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allele num: 65152
num of homozygotes: 0

Latino
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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African
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 12

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
type: Population
allele count: 618
allele frequency: 3.823784185125603e-2
allele num: 16162
num of homozygotes: 15

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.075030750307503e-5
allele num: 65040
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.372158097236796e-4
allele num: 11436
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.004823151125402e-4
allele num: 9952
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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SIO_000300: 5.839e1

ReadPosRankSum
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SIO_000300: -8.080000000000001e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64802
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.086167800453515e-5
allele num: 14112
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African
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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FS
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.165418169487345e-5
allele num: 64878
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ReadPosRankSum
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SIO_000300: -4.85e-1

BaseQRankSum
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SIO_000300: 2.38e0

DP
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SIO_000300: 1.405322e6

ClippingRankSum
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SIO_000300: 3.58e-1

VQSLOD
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SIO_000300: 1.05e0

MQ
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SIO_000300: 6.0e1

FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.553e1

InbreedingCoeff
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SIO_000300: 4.0e-3

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.247507433968865e-4
allele num: 11434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

DP
type: SiteQuality
SIO_000300: 1.424276e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

FS
type: SiteQuality
SIO_000300: 1.763e0

BaseQRankSum
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SIO_000300: -2.122e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeDepth
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variant carriers: 35

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

African
type: Population
allele count: 1877
allele frequency: 1.837673781084786e-1
allele num: 10214
num of homozygotes: 155

South Asian
type: Population
allele count: 4
allele frequency: 2.779708130646282e-4
allele num: 14390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.51288056206089e-3
allele num: 854
num of homozygotes: 0

Latino
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allele count: 93
allele frequency: 8.119434258774228e-3
allele num: 11454
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
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European (Non-Finnish)
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allele count: 26
allele frequency: 3.994714685185754e-4
allele num: 65086
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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VQSLOD
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SIO_000300: 5.56e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 3
allele frequency: 3.48594004183128e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65086
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

South Asian
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Other
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.995211492418196e-4
allele num: 65156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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East Asian
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allele count: 0
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South Asian
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.889899407468652e-5
allele num: 14514
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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Latino
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QD
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65146
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.533413070813016e-5
allele num: 65214
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele num: 8608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65270
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.828735318219065e-5
allele num: 14644
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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Other
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African
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East Asian
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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Latino
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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MQRankSum
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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DP
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InbreedingCoeff
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MQRankSum
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SIO_000300: 5.06e-1

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.547930853850184e-5
allele num: 15272
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

East Asian
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allele frequency: 5.801810164771409e-4
allele num: 8618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.0441400304414e-5
allele num: 65700
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51851064475962e-5
allele num: 65854
num of homozygotes: 0

QD
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SIO_000300: 1.329e1

BaseQRankSum
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MQRankSum
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SIO_000300: 4.28e-1

MQ
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DP
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

FS
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SIO_000300: 1.666e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
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ReadPosRankSum
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SIO_000300: 4.38e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.526486e6

MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 3.022791850553171e-5
allele num: 66164
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European (Finnish)
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East Asian
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MQ
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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allele num: 66198
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African
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East Asian
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South Asian
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Latino
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 27
allele frequency: 4.077564334903951e-4
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Other
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allele num: 890
num of homozygotes: 0

Latino
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allele count: 96
allele frequency: 8.308810801454042e-3
allele num: 11554
num of homozygotes: 1

South Asian
type: Population
allele count: 5
allele frequency: 3.112549800796813e-4
allele num: 16064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 1932
allele frequency: 1.863785452440671e-1
allele num: 10366
num of homozygotes: 170

BaseQRankSum
type: SiteQuality
SIO_000300: -2.314e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.486e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
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SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 3.464e0

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 1.576631e6

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 570
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.660477613742717e-4
allele num: 66246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 2.635e0

DP
type: SiteQuality
SIO_000300: 1.567732e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 591
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.217508677207867e-3
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.568987e6

QD
type: SiteQuality
SIO_000300: 1.186e1

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

FS
type: SiteQuality
SIO_000300: 3.448e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 25
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variant carriers: 0

GenotypeDepth
all individuals: 17
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

DP
type: SiteQuality
SIO_000300: 1.573628e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.3e-3

BaseQRankSum
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FS
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MQ
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QD
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MQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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European (Non-Finnish)
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQRankSum
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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Other
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allele num: 900
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.012592637223595e-5
allele num: 66388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
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SIO_000300: 1.9e-3

QD
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SIO_000300: 1.143e1

DP
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SIO_000300: 1.575111e6

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 8.33e-1

BaseQRankSum
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SIO_000300: 1.54e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.541782300339192e-4
allele num: 6486
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

FS
type: SiteQuality
SIO_000300: 1.1438e1

ClippingRankSum
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MQ
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SIO_000300: 5.833e1

BaseQRankSum
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SIO_000300: -2.051e0

VQSLOD
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DP
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SIO_000300: 1.574128e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 8.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507522537461935e-5
allele num: 66334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 1.571888e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
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SIO_000300: -1.465e0

MQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

FS
type: SiteQuality
SIO_000300: 1.169e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

BaseQRankSum
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SIO_000300: -1.983e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16346
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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SIO_000300: 1.86e-1

MQ
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.510072181450273e-5
allele num: 66222
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.125199068969742e-5
allele num: 16326
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -2.8e-2

InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.567407e6

MQRankSum
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SIO_000300: 1.06e0

BaseQRankSum
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SIO_000300: -5.99e-1

ClippingRankSum
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SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

QD
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SIO_000300: 1.048e1

GenotypeDepth
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variant carriers: 168

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1807

GenotypeQuality
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variant carriers: 10

African
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allele count: 1928
allele frequency: 1.86785506684751e-1
allele num: 10322
num of homozygotes: 169

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
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allele count: 3
allele frequency: 3.355704697986577e-3
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Latino
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allele count: 95
allele frequency: 8.247959715228338e-3
allele num: 11518
num of homozygotes: 1

South Asian
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allele count: 5
allele frequency: 3.062599534484871e-4
allele num: 16326
num of homozygotes: 0

European (Non-Finnish)
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allele count: 27
allele frequency: 4.080029013539652e-4
allele num: 66176
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

ClippingRankSum
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SIO_000300: -1.17e-1

MQ
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SIO_000300: 5.962e1

FS
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VQSLOD
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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SIO_000300: 1.49e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514508996183437e-5
allele num: 66028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.786651008025054e-5
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 2.425e0

MQRankSum
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SIO_000300: 9.77e-1

ClippingRankSum
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SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.52543e6

InbreedingCoeff
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SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65764
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.514306e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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SIO_000300: -8.95e-1

VQSLOD
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BaseQRankSum
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MQ
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FS
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SIO_000300: 3.023e0

QD
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MQRankSum
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SIO_000300: -2.92e-1

ReadPosRankSum
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SIO_000300: 9.330000000000001e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 65594
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African
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Latino
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.283775292195552e-5
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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MQ
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.546838262591263e-5
allele num: 64648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 64258
num of homozygotes: 0

African
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allele count: 0
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Other
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allele count: 0
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East Asian
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allele count: 0
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FS
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SIO_000300: 1.688e0

DP
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SIO_000300: 1.442278e6

QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7012
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.106194690265487e-4
allele num: 9040
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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FS
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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Latino
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South Asian
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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African
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Latino
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South Asian
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 9.07969e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.304e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeDepth
all individuals: 20
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10925
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2824
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 508
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.808943399101089e-5
allele num: 52508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 7.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.226e1

DP
type: SiteQuality
SIO_000300: 9.06429e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeDepth
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13925
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 531
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 317
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1688
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5706
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5619
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4435
bin: 2.25e1
variant carriers: 0