X-151908791-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908791
    reference: chr 0
allele count: 6
allele frequency: 6.836827711941659e-5
allele num: 87760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.30C>T
  hgvsp: ENST00000370291.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.37C>T
  hgvsp: ENSP00000354898.5:p.Leu13Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.30C>T
  hgvsp: ENST00000370287.3:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.30C>T
  hgvsp: ENST00000452779.2:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5209
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4687
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu13Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

X-151908809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908809
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908809
    reference: chr 0
allele count: 2
allele frequency: 2.278968538839321e-5
allele num: 87759
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.48A>G
  hgvsp: ENST00000370287.3:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.55A>G
  hgvsp: ENSP00000354898.5:p.Ser19Gly
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.48A>G
  hgvsp: ENST00000370291.2:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.48A>G
  hgvsp: ENST00000452779.2:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser19Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-151908811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908811
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908811
    reference: chr 0
allele count: 3
allele frequency: 3.418374904570367e-5
allele num: 87761
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.57C>T
  hgvsp: ENST00000361211.5:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.50C>T
  hgvsp: ENSP00000359310.3:p.Ala17Val
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.50C>T
  hgvsp: ENSP00000359314.2:p.Ala17Val
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.50C>T
  hgvsp: ENSP00000396520.2:p.Ala17Val
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 5779
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Ala17Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

X-151908813-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
allele count: 3
allele frequency: 3.418374904570367e-5
allele num: 87761
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.52C>A
  hgvsp: ENST00000370287.3:c.52C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.52C>A
  hgvsp: ENST00000370291.2:c.52C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.59C>A
  hgvsp: ENSP00000354898.5:p.Ser20Ter
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.52C>A
  hgvsp: ENST00000452779.2:c.52C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
hgvs: p.Ser20Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-151908813-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.52C>G
  hgvsp: ENSP00000359314.2:p.Arg18Gly
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.59C>G
  hgvsp: ENSP00000354898.5:p.Ser20Trp
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.52C>G
  hgvsp: ENSP00000359310.3:p.Arg18Gly
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.52C>G
  hgvsp: ENSP00000396520.2:p.Arg18Gly
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg18Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

X-151908813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908813
    reference: chr 0
allele count: 2
allele frequency: 2.278916603046912e-5
allele num: 87761
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.52C>T
  hgvsp: ENSP00000396520.2:p.Arg18Trp
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.59C>T
  hgvsp: ENSP00000354898.5:p.Ser20Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.52C>T
  hgvsp: ENSP00000359314.2:p.Arg18Trp
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.52C>T
  hgvsp: ENSP00000359310.3:p.Arg18Trp
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Arg18Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

X-151908814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908814
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908814
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.60G>A
  hgvsp: ENST00000361211.5:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.53G>A
  hgvsp: ENSP00000396520.2:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.53G>A
  hgvsp: ENSP00000359310.3:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.53G>A
  hgvsp: ENSP00000359314.2:p.Arg18Gln
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Arg18Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-151908816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908816
    reference: chr 0
allele count: 2
allele frequency: 2.278916603046912e-5
allele num: 87761
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.55G>A
  hgvsp: ENSP00000359310.3:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.62G>A
  hgvsp: ENSP00000354898.5:p.Gly21Glu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.55G>A
  hgvsp: ENSP00000396520.2:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.55G>A
  hgvsp: ENSP00000359314.2:p.Gly19Arg
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly19Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

X-151908836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908836
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.82T>C
  hgvsp: ENSP00000354898.5:p.Ter28GlnextTer62
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.75T>C
  hgvsp: ENST00000370291.2:c.75T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.75T>C
  hgvsp: ENST00000452779.2:c.75T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.75T>C
  hgvsp: ENST00000370287.3:c.75T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ter28GlnextTer62
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

X-151908837-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908837
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.83A>G
  hgvsp: ENSP00000354898.5:p.Ter28TrpextTer62
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.76A>G
  hgvsp: ENSP00000396520.2:p.Arg26Gly
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.76A>G
  hgvsp: ENSP00000359310.3:p.Arg26Gly
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.76A>G
  hgvsp: ENSP00000359314.2:p.Arg26Gly
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4744
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33424
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ter28TrpextTer62
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-151908844-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908844
    reference: chr 0
allele count: 12299
allele frequency: 1.402154705580573e-1
allele num: 87715
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.83A>T
  hgvsp: ENSP00000396520.2:p.Tyr28Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.83A>T
  hgvsp: ENSP00000359314.2:p.Tyr28Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.83A>T
  hgvsp: ENSP00000359310.3:p.Tyr28Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*6A>T
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 6.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 6.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14297
  bin: 9.75e1
  variant carriers: 10650
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 9.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 7.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2299
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  variant carriers: 50
genotype quality: GenotypeQuality
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  variant carriers: 11
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 7
genotype quality: GenotypeQuality
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  variant carriers: 15
genotype quality: GenotypeQuality
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  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 36502
  bin: 9.75e1
  variant carriers: 11484
hgvs: p.Tyr28Phe
num of homozygotes: 619
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-151908845-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908845
    reference: chr 0
allele count: 12296
allele frequency: 1.401908584067769e-1
allele num: 87709
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.84C>G
  hgvsp: ENSP00000359314.2:p.Tyr28Ter
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*7C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.84C>G
  hgvsp: ENSP00000359310.3:p.Tyr28Ter
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.84C>G
  hgvsp: ENSP00000396520.2:p.Tyr28Ter
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 6.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 6.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 14295
  bin: 9.75e1
  variant carriers: 10646
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 7.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 36498
  bin: 9.75e1
  variant carriers: 11480
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 9.25e1
  variant carriers: 18
hgvs: p.Tyr28Ter
num of homozygotes: 619
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

X-151908852-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908852
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908852
    reference: chr 0
allele count: 6
allele frequency: 6.83667190811513e-5
allele num: 87762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.91A>G
  hgvsp: ENSP00000396520.2:p.Thr31Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*14A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.91A>G
  hgvsp: ENSP00000359314.2:p.Thr31Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.91A>G
  hgvsp: ENSP00000359310.3:p.Thr31Ala
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32869
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Thr31Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

X-151908860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908860
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.99G>C
  hgvsp: ENST00000370287.3:c.99G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.99G>C
  hgvsp: ENST00000370291.2:c.99G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*22G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.99G>C
  hgvsp: ENST00000452779.2:c.99G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu33Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

X-151908866-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908866
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908866
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*28G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.105G>A
  hgvsp: ENST00000370287.3:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.105G>A
  hgvsp: ENST00000452779.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.105G>A
  hgvsp: ENST00000370291.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32868
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys35Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-151908879-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908879
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.118C>G
  hgvsp: ENSP00000359310.3:p.Pro40Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.118C>G
  hgvsp: ENSP00000396520.2:p.Pro40Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.118C>G
  hgvsp: ENSP00000359314.2:p.Pro40Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*41C>G
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2440
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hgvs: p.Pro40Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

X-151908879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908879
    reference: chr 0
allele count: 37
allele frequency: 4.215947676670997e-4
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.118C>T
  hgvsp: ENSP00000359310.3:p.Pro40Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.118C>T
  hgvsp: ENSP00000359314.2:p.Pro40Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.118C>T
  hgvsp: ENSP00000396520.2:p.Pro40Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*41C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro40Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-151908882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908882
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908882
    reference: chr 0
allele count: 7
allele frequency: 7.976117226134318e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.121C>T
  hgvsp: ENSP00000396520.2:p.Arg41Ter
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.121C>T
  hgvsp: ENSP00000359314.2:p.Arg41Ter
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*44C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.121C>T
  hgvsp: ENSP00000359310.3:p.Arg41Ter
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1243
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Arg41Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-151908883-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908883
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908883
    reference: chr 0
allele count: 2
allele frequency: 2.278890636038377e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.122G>T
  hgvsp: ENSP00000359314.2:p.Arg41Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.122G>T
  hgvsp: ENSP00000359310.3:p.Arg41Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.122G>T
  hgvsp: ENSP00000396520.2:p.Arg41Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
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  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*45G>T
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5414
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Arg41Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
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site quality: InbreedingCoeff
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site quality: MQ

X-151908893-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908893
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908893
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*55C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.132C>T
  hgvsp: ENST00000370291.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.132C>T
  hgvsp: ENST00000452779.2:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
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  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
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  hgvsp: ENST00000370287.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10372
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser44Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

X-151908899-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908899
    reference: chr 0
allele count: 25
allele frequency: 2.848710673549152e-4
allele num: 87759
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*61T>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.138T>G
  hgvsp: ENSP00000359314.2:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.138T>G
  hgvsp: ENSP00000359310.3:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.138T>G
  hgvsp: ENSP00000396520.2:p.Phe46Leu
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
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genotype depth: GenotypeDepth
  all individuals: 8329
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1954
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genotype depth: GenotypeDepth
  all individuals: 1560
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2849
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe46Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

X-151908899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908899
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908899
    reference: chr 0
allele count: 1
allele frequency: 1.139484269419661e-5
allele num: 87759
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*61T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.138T>C
  hgvsp: ENST00000452779.2:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.138T>C
  hgvsp: ENST00000370287.3:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.138T>C
  hgvsp: ENST00000370291.2:c.138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
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genotype depth: GenotypeDepth
  all individuals: 3436
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5795
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2885
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genotype depth: GenotypeDepth
  all individuals: 1954
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 10371
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  variant carriers: 0
hgvs: p.Phe46Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

X-151908901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908901
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908901
    reference: chr 0
allele count: 2
allele frequency: 2.278890636038377e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.140C>T
  hgvsp: ENSP00000396520.2:p.Ser47Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.140C>T
  hgvsp: ENSP00000359310.3:p.Ser47Phe
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*63C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.140C>T
  hgvsp: ENSP00000359314.2:p.Ser47Phe
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2529
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  variant carriers: 0
hgvs: p.Ser47Phe
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-151908904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908904
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908904
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.143A>G
  hgvsp: ENSP00000359314.2:p.Asn48Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.143A>G
  hgvsp: ENSP00000359310.3:p.Asn48Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*66A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.143A>G
  hgvsp: ENSP00000396520.2:p.Asn48Ser
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 5413
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genotype depth: GenotypeDepth
  all individuals: 8328
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genotype depth: GenotypeDepth
  all individuals: 7822
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genotype depth: GenotypeDepth
  all individuals: 3976
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1956
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2371
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5682
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3089
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2529
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  variant carriers: 0
hgvs: p.Asn48Ser
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

X-151908908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908908
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908908
    reference: chr 0
allele count: 2
allele frequency: 2.278890636038377e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.147C>T
  hgvsp: ENST00000452779.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.147C>T
  hgvsp: ENST00000370291.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*70C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.147C>T
  hgvsp: ENST00000370287.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1681
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  variant carriers: 0
hgvs: p.Asn49Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

X-151908910-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908910
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908910
    reference: chr 0
allele count: 3
allele frequency: 3.418335954057565e-5
allele num: 87762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.149A>T
  hgvsp: ENSP00000359314.2:p.His50Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*72A>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.149A>T
  hgvsp: ENSP00000396520.2:p.His50Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.149A>T
  hgvsp: ENSP00000359310.3:p.His50Leu
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His50Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-151908912-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908912
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908912
    reference: chr 0
allele count: 3
allele frequency: 3.418335954057565e-5
allele num: 87762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.151C>A
  hgvsp: ENSP00000359310.3:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.151C>A
  hgvsp: ENSP00000359314.2:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.151C>A
  hgvsp: ENSP00000396520.2:p.Pro51Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*74C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro51Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

X-151908912-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908912
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908912
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.151C>G
  hgvsp: ENSP00000359310.3:p.Pro51Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*74C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.151C>G
  hgvsp: ENSP00000396520.2:p.Pro51Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.151C>G
  hgvsp: ENSP00000359314.2:p.Pro51Ala
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5682
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro51Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

X-151908914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908914
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.153A>G
  hgvsp: ENST00000370291.2:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.153A>G
  hgvsp: ENST00000452779.2:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*76A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.153A>G
  hgvsp: ENST00000370287.3:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3088
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro51Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS

X-151908915-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908915
    reference: chr 0
allele count: 2
allele frequency: 2.278994507623237e-5
allele num: 87758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*77T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.154T>C
  hgvsp: ENSP00000359310.3:p.Ser52Pro
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.154T>C
  hgvsp: ENSP00000396520.2:p.Ser52Pro
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.154T>C
  hgvsp: ENSP00000359314.2:p.Ser52Pro
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5680
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Ser52Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

X-151908921-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908921
    reference: chr 0
allele count: 1
allele frequency: 1.139445318019188e-5
allele num: 87762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.160C>A
  hgvsp: ENSP00000396520.2:p.Pro54Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.160C>A
  hgvsp: ENSP00000359310.3:p.Pro54Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*83C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.160C>A
  hgvsp: ENSP00000359314.2:p.Pro54Thr
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Pro54Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

X-151908922-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908922
    reference: chr 0
allele count: 375
allele frequency: 4.272968630712959e-3
allele num: 87761
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.161C>G
  hgvsp: ENSP00000359310.3:p.Pro54Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*84C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.161C>G
  hgvsp: ENSP00000396520.2:p.Pro54Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.161C>G
  hgvsp: ENSP00000359314.2:p.Pro54Arg
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8309
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1942
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro54Arg
num of homozygotes: 7
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-151908922-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908922
    reference: chr 0
allele count: 48
allele frequency: 5.469399847312588e-4
allele num: 87761
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*84C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.161C>T
  hgvsp: ENSP00000359310.3:p.Pro54Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.161C>T
  hgvsp: ENSP00000359314.2:p.Pro54Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.161C>T
  hgvsp: ENSP00000396520.2:p.Pro54Leu
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3080
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  variant carriers: 0
hgvs: p.Pro54Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-151908930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908930
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908930
    reference: chr 0
allele count: 6
allele frequency: 6.836749809140734e-5
allele num: 87761
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+2C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+2C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+2C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.169C>T
  hgvsp: ENSP00000359314.2:p.Arg57Ter
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32813
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  variant carriers: 6
hgvs: c.167+2C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

X-151908931-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908931
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908931
    reference: chr 0
allele count: 1
allele frequency: 1.139458301523456e-5
allele num: 87761
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.170G>A
  hgvsp: ENSP00000359314.2:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+3G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+3G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+3G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3098
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hgvs: p.Arg57Gln
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-151908933-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908933
    reference: chr 0
allele count: 4
allele frequency: 4.55788514129444e-5
allele num: 87760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+5G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+5G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.172G>C
  hgvsp: ENSP00000359314.2:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+5G>C
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly58Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-151908938-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908938
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908938
    reference: chr 0
allele count: 3
allele frequency: 3.418452808258982e-5
allele num: 87759
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.177G>T
  hgvsp: ENSP00000359314.2:p.Arg59Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+10G>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+10G>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+10G>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 2362
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Arg59Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS

X-151908942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908942
    reference: chr 0
allele count: 21
allele frequency: 2.392971500848935e-4
allele num: 87757
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+14A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.181A>G
  hgvsp: ENSP00000359314.2:p.Lys61Glu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+14A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+14A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1963
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32811
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  variant carriers: 20
hgvs: p.Lys61Glu
num of homozygotes: 1
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

X-151908943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908943
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908943
    reference: chr 0
allele count: 2
allele frequency: 2.279046446966589e-5
allele num: 87756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+15A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+15A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.182A>G
  hgvsp: ENSP00000359314.2:p.Lys61Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+15A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys61Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-151908944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908944
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908944
    reference: chr 0
allele count: 6
allele frequency: 6.837139340899768e-5
allele num: 87756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+16G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+16G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.183G>A
  hgvsp: ENST00000370291.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+16G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Lys61Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-151908955-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908955
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908955
    reference: chr 0
allele count: 3
allele frequency: 3.419037199124726e-5
allele num: 87744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+27T>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.194T>A
  hgvsp: ENSP00000359314.2:p.Ile65Asn
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+27T>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+27T>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ile65Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
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site quality: QD

X-151908957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908957
    reference: chr 0
allele count: 81
allele frequency: 9.230874425919384e-4
allele num: 87749
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.196C>T
  hgvsp: ENSP00000359314.2:p.Pro66Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+29C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+29C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+29C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro66Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

X-151908958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908958
    reference: chr 0
allele count: 4
allele frequency: 4.558508456033186e-5
allele num: 87748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+30C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.197C>T
  hgvsp: ENSP00000359314.2:p.Pro66Leu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+30C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+30C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Pro66Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
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site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
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site quality: DP
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X-151908963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908963
    reference: chr 0
allele count: 1
allele frequency: 1.139718033758448e-5
allele num: 87741
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+35C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+35C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.202C>T
  hgvsp: ENSP00000359314.2:p.Pro68Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+35C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10335
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro68Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-151908967-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908967
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+39A>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+39A>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.206A>C
  hgvsp: ENSP00000359314.2:p.Glu69Ala
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+39A>C
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5638
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4868
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu69Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-151908967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908967
    reference: chr 0
allele count: 3
allele frequency: 3.419193070435377e-5
allele num: 87740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+39A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+39A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+39A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.206A>G
  hgvsp: ENSP00000359314.2:p.Glu69Gly
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 1678
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  variant carriers: 0
hgvs: p.Glu69Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

X-151908969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908969
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908969
    reference: chr 0
allele count: 1
allele frequency: 1.139731023478459e-5
allele num: 87740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.208G>A
  hgvsp: ENSP00000359314.2:p.Ala70Thr
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+41G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+41G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+41G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Ala70Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-151908974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908974
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908974
    reference: chr 0
allele count: 1
allele frequency: 1.139899916787306e-5
allele num: 87727
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.213A>G
  hgvsp: ENST00000370291.2:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+46A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+46A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+46A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu71Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

X-151908984-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908984
    reference: chr 0
allele count: 1
allele frequency: 1.140120852810398e-5
allele num: 87710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+56A>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*1A>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+56A>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+56A>C
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2435
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-151908984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908984
    reference: chr 0
allele count: 1
allele frequency: 1.140120852810398e-5
allele num: 87710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+56A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*1A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+56A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+56A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-151908985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908985
    reference: chr 0
allele count: 135
allele frequency: 1.539338654503991e-3
allele num: 87700
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+57T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*2T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+57T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+57T>C
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-151908994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151908994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151908994
    reference: chr 0
allele count: 1
allele frequency: 1.140615019618578e-5
allele num: 87672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+66C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+66C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+66C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-151909002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909002
    reference: chr 0
allele count: 1
allele frequency: 1.141565542985651e-5
allele num: 87599
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+74G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+74G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+74G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

X-151909004-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909004
    reference: chr 0
allele count: 1
allele frequency: 1.141474328242358e-5
allele num: 87606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+76C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+76C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+76C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*21C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-151909004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909004
    reference: chr 0
allele count: 1
allele frequency: 1.141474328242358e-5
allele num: 87606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+76C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*21C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+76C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+76C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-151909007-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909007
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909007
    reference: chr 0
allele count: 1
allele frequency: 1.141774088578834e-5
allele num: 87583
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+79C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*24C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+79C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+79C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

X-151909011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909011
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909011
    reference: chr 0
allele count: 4
allele frequency: 4.570697259866993e-5
allele num: 87514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+83C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*28C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+83C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+83C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-151909024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909024
    reference: chr 0
allele count: 1
allele frequency: 1.145396650860193e-5
allele num: 87306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+96G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+96G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+96G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-151909025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909025
    reference: chr 0
allele count: 1
allele frequency: 1.146131805157593e-5
allele num: 87250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*42G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+97G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+97G>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+97G>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-151909033-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909033
    reference: chr 0
allele count: 1
allele frequency: 1.145619722989151e-5
allele num: 87289
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+105C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+105C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*50C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+105C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-151935288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151935288
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151935288
    reference: chr 0
allele count: 151
allele frequency: 1.735911525992689e-3
allele num: 86986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000221867
  ensembl protein: ENSP00000359301
  ensembl transcript: ENST00000370278
  gene symbol: MAGEA3
  hgvsc: ENST00000370278.3:c.879C>T
  hgvsp: ENST00000370278.3:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6801
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000221867
  ensembl protein: ENSP00000377480
  ensembl transcript: ENST00000393902
  gene symbol: MAGEA3
  hgvsc: ENST00000393902.3:c.879C>T
  hgvsp: ENST00000393902.3:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6801
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 215
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  variant carriers: 0
hgvs: p.Ile293Ile
num of homozygotes: 1
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4487
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-151909033-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909033
    reference: chr 0
allele count: 1
allele frequency: 1.145619722989151e-5
allele num: 87289
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*50C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.167+105C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*90+105C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.167+105C>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-151909091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909091
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909091
    reference: chr 0
allele count: 1
allele frequency: 1.140823218034133e-5
allele num: 87656
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-48T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*108T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-48T>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-48T>C
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

X-151909095-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909095
    reference: chr 0
allele count: 1
allele frequency: 1.140849248180345e-5
allele num: 87654
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-44C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-44C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*112C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-44C>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-151909101-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909101
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909101
    reference: chr 0
allele count: 115
allele frequency: 1.311782084478766e-3
allele num: 87667
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-38A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*118A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-38A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-38A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16519
  bin: 9.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 133
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 80
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genotype quality: GenotypeQuality
  all individuals: 7151
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-151909109-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909109
    reference: chr 0
allele count: 1
allele frequency: 1.140641040264629e-5
allele num: 87670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-30C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*126C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-30C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-30C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-151909110-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909110
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909110
    reference: chr 0
allele count: 2
allele frequency: 2.28146424375164e-5
allele num: 87663
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*127C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-29C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-29C>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-29C>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1958
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

X-151909112-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909112
    reference: chr 0
allele count: 4
allele frequency: 4.562512119172817e-5
allele num: 87671
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-27C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-27C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-27C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*129C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 124
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-151909118-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909118
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909118
    reference: chr 0
allele count: 17
allele frequency: 1.938846500382067e-4
allele num: 87681
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-21A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*135A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-21A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-21A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7450
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-151909120-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909120
    reference: chr 0
allele count: 1
allele frequency: 1.140575990875392e-5
allele num: 87675
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*137C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-19C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-19C>A
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-19C>A
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7458
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-151909120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909120
    reference: chr 0
allele count: 1
allele frequency: 1.140575990875392e-5
allele num: 87675
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-19C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*137C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-19C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-19C>T
  variant of: http://identifiers.org/hgnc/24294
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1624
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

X-151909138-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909138
    reference: chr 0
allele count: 2
allele frequency: 2.280839805216281e-5
allele num: 87687
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.168-1G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.168-1G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*155G>C
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*91-1G>C
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
hgvs: c.168-1G>C
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-151909152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909152
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909152
    reference: chr 0
allele count: 1
allele frequency: 1.140146850914398e-5
allele num: 87708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*104C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.181C>T
  hgvsp: ENSP00000359310.3:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*169C>T
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.181C>T
  hgvsp: ENSP00000396520.2:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro61Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

X-151909155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909155
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909155
    reference: chr 0
allele count: 7
allele frequency: 7.981300952055184e-5
allele num: 87705
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*172A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*107A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.184A>G
  hgvsp: ENSP00000359310.3:p.Lys62Glu
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.184A>G
  hgvsp: ENSP00000396520.2:p.Lys62Glu
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16524
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41590
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys62Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

X-151909156-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151909156
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151909156
    reference: chr 0
allele count: 50276
allele frequency: 5.736060879188581e-1
allele num: 87649
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359310
  ensembl transcript: ENST00000370287
  gene symbol: CSAG1
  hgvsc: ENST00000370287.3:c.185A>G
  hgvsp: ENSP00000359310.3:p.Lys62Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000396520
  ensembl transcript: ENST00000452779
  gene symbol: CSAG1
  hgvsc: ENST00000452779.2:c.185A>G
  hgvsp: ENSP00000396520.2:p.Lys62Arg
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000354898
  ensembl transcript: ENST00000361211
  gene symbol: CSAG1
  hgvsc: ENST00000361211.5:c.*108A>G
  variant of: http://identifiers.org/hgnc/24294
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000198930
  ensembl protein: ENSP00000359314
  ensembl transcript: ENST00000370291
  gene symbol: CSAG1
  hgvsc: ENST00000370291.2:c.*173A>G
  variant of: http://identifiers.org/hgnc/24294
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 8.25e1
  variant carriers: 1699
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 5.75e1
  variant carriers: 1255
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 4.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 6.75e1
  variant carriers: 1582
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.25e1
  variant carriers: 1095
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.25e1
  variant carriers: 1410
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 4.25e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.75e1
  variant carriers: 1675
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.25e1
  variant carriers: 1700
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 3.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 3.75e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 8.75e1
  variant carriers: 1571
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 9.25e1
  variant carriers: 1446
genotype depth: GenotypeDepth
  all individuals: 25719
  bin: 9.75e1
  variant carriers: 24686
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 6.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 7.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6665
  bin: 6.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 9.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Lys62Arg
num of homozygotes: 9688
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A

GenotypeQuality
all individuals: 33421
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10063
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 7.045561296383278e-4
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

QD
type: SiteQuality
SIO_000300: 1.824e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.25e-2

DP
type: SiteQuality
SIO_000300: 3.280369e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

GenotypeQuality
all individuals: 2481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47995
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.993e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.147e1

MQ
type: SiteQuality
SIO_000300: 5.56e1

DP
type: SiteQuality
SIO_000300: 3.280201e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

VQSLOD
type: SiteQuality
SIO_000300: -6.044e0

QD
type: SiteQuality
SIO_000300: 4.33e0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33418
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.166927099610392e-5
allele num: 47997
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.373e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.849e0

VQSLOD
type: SiteQuality
SIO_000300: -4.932e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.406e0

DP
type: SiteQuality
SIO_000300: 3.280408e6

GenotypeQuality
all individuals: 10064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.250390649415588e-5
allele num: 47997
num of homozygotes: 0

QD
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SIO_000300: 1.679e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

FS
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.359e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.771e0

DP
type: SiteQuality
SIO_000300: 3.280607e6

MQ
type: SiteQuality
SIO_000300: 5.635e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083463549805196e-5
allele num: 47997
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.679e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.359e-1

FS
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 5.635e1

MQRankSum
type: SiteQuality
SIO_000300: -2.771e0

DP
type: SiteQuality
SIO_000300: 3.280607e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.359e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.635e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.75e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.679e1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 3.280758e6

MQ
type: SiteQuality
SIO_000300: 5.844e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 6.605e0

VQSLOD
type: SiteQuality
SIO_000300: -1.232e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.199999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.947e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 3.280615e6

FS
type: SiteQuality
SIO_000300: 8.493e0

MQRankSum
type: SiteQuality
SIO_000300: -3.263e0

QD
type: SiteQuality
SIO_000300: 4.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.672e1

VQSLOD
type: SiteQuality
SIO_000300: -3.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.48e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10064
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

DP
type: SiteQuality
SIO_000300: 3.28068e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

MQ
type: SiteQuality
SIO_000300: 5.272e1

MQRankSum
type: SiteQuality
SIO_000300: -7.683e0

VQSLOD
type: SiteQuality
SIO_000300: -6.734e0

FS
type: SiteQuality
SIO_000300: 5.091e0

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
all individuals: 10062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 2924
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47997
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.399e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 3.280922e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 3.742e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.776e0

VQSLOD
type: SiteQuality
SIO_000300: -4.466e-1

GenotypeQuality
all individuals: 2589
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2179
bin: 7.25e1
variant carriers: 15

Other
type: Population
allele count: 95
allele frequency: 1.500789889415482e-1
allele num: 633
num of homozygotes: 5

African
type: Population
allele count: 913
allele frequency: 1.07235142118863e-1
allele num: 8514
num of homozygotes: 25

European (Finnish)
type: Population
allele count: 1060
allele frequency: 2.343059239610964e-1
allele num: 4524
num of homozygotes: 52

South Asian
type: Population
allele count: 767
allele frequency: 7.577553843114009e-2
allele num: 10122
num of homozygotes: 11

Latino
type: Population
allele count: 597
allele frequency: 6.403518180843076e-2
allele num: 9323
num of homozygotes: 24

European (Non-Finnish)
type: Population
allele count: 8740
allele frequency: 1.822275968475043e-1
allele num: 47962
num of homozygotes: 501

East Asian
type: Population
allele count: 127
allele frequency: 1.913515142383607e-2
allele num: 6637
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.552e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.127e1

QD
type: SiteQuality
SIO_000300: 2.584e1

MQRankSum
type: SiteQuality
SIO_000300: -5.061e0

DP
type: SiteQuality
SIO_000300: 4.995653e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.396e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 11

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 14

GenotypeQuality
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bin: 7.25e1
variant carriers: 13

Latino
type: Population
allele count: 595
allele frequency: 6.38412017167382e-2
allele num: 9320
num of homozygotes: 24

European (Finnish)
type: Population
allele count: 1060
allele frequency: 2.343059239610964e-1
allele num: 4524
num of homozygotes: 52

European (Non-Finnish)
type: Population
allele count: 8738
allele frequency: 1.822010926227115e-1
allele num: 47958
num of homozygotes: 501

Other
type: Population
allele count: 95
allele frequency: 1.500789889415482e-1
allele num: 633
num of homozygotes: 5

African
type: Population
allele count: 915
allele frequency: 1.07444809769845e-1
allele num: 8516
num of homozygotes: 25

South Asian
type: Population
allele count: 767
allele frequency: 7.577553843114009e-2
allele num: 10122
num of homozygotes: 11

East Asian
type: Population
allele count: 126
allele frequency: 1.89873417721519e-2
allele num: 6636
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 3.033e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.548999999999999e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 4.993462e6

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.586e1

MQ
type: SiteQuality
SIO_000300: 5.398e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 4.29000429000429e-4
allele num: 9324
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.166840285011876e-5
allele num: 47998
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

DP
type: SiteQuality
SIO_000300: 3.358097e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.267e1

MQRankSum
type: SiteQuality
SIO_000300: -8.356999999999999e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

FS
type: SiteQuality
SIO_000300: 9.360000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 3.357563e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.611e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 10371
bin: 6.25e1
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47998
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.357517e6

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.228e0

MQRankSum
type: SiteQuality
SIO_000300: 6.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.266e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.43e0

VQSLOD
type: SiteQuality
SIO_000300: -7.212e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 2848
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variant carriers: 0

GenotypeQuality
all individuals: 2524
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GenotypeQuality
all individuals: 10372
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GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.857e0

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.66e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.235e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 1.111e0

VQSLOD
type: SiteQuality
SIO_000300: 2.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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South Asian
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allele count: 2
allele frequency: 1.975698903487109e-4
allele num: 10123
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African
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allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 34
allele frequency: 7.083628484520189e-4
allele num: 47998
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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SIO_000300: 1.66e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

FS
type: SiteQuality
SIO_000300: 1.111e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.857e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.975698903487109e-4
allele num: 10123
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele count: 4
allele frequency: 8.333680570023751e-5
allele num: 47998
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.586e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 1.975698903487109e-4
allele num: 10123
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47998
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.35723e6

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.83e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.641e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10123
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African
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allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 1.0096e1

QD
type: SiteQuality
SIO_000300: 1.134e1

DP
type: SiteQuality
SIO_000300: 3.357097e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.678000000000001e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.45845487123927e-4
allele num: 47996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
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allele count: 17
allele frequency: 1.996242367308596e-3
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

MQRankSum
type: SiteQuality
SIO_000300: -2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.524e-1

MQ
type: SiteQuality
SIO_000300: 5.502e1

DP
type: SiteQuality
SIO_000300: 3.361385e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47996
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10122
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.502e1

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

DP
type: SiteQuality
SIO_000300: 3.361385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.524e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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East Asian
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allele count: 2
allele frequency: 3.01295570955107e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47998
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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South Asian
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 47998
num of homozygotes: 0

African
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South Asian
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ClippingRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.166840285011876e-5
allele num: 47998
num of homozygotes: 0

Latino
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allele num: 9324
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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East Asian
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num of homozygotes: 0

African
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 4.519433564326605e-4
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European (Non-Finnish)
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African
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Other
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South Asian
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 6.250260427517813e-5
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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allele frequency: 1.17426021606388e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47998
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

African
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South Asian
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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African
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allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 6.365e0

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10123
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.321785085143864e-2
allele num: 8515
num of homozygotes: 7

East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

Latino
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allele frequency: 6.435006435006435e-4
allele num: 9324
num of homozygotes: 0

South Asian
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 48

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4530
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South Asian
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African
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allele frequency: 5.40223135642983e-3
allele num: 8515
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European (Non-Finnish)
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allele frequency: 2.083420142505938e-5
allele num: 47998
num of homozygotes: 0

Latino
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allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 3.406788e6

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
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Latino
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allele frequency: 2.145002145002145e-4
allele num: 9324
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.083463549805196e-5
allele num: 47997
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South Asian
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East Asian
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 9.878494517435543e-5
allele num: 10123
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 633
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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South Asian
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East Asian
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allele num: 6638
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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ReadPosRankSum
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VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 3.750390665694343e-4
allele num: 47995
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Latino
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Other
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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East Asian
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MQ
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 6.436387041407423e-4
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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European (Finnish)
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.335e1

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.14e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.854e0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 4.035e0

DP
type: SiteQuality
SIO_000300: 3.350837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

GenotypeQuality
all individuals: 2538
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083984578514119e-5
allele num: 47985
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10123
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.789e0

MQRankSum
type: SiteQuality
SIO_000300: -4.393e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.86e-2

MQ
type: SiteQuality
SIO_000300: 5.744e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 3.350043e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 2.5543e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 2.234e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32832
bin: 9.75e1
variant carriers: 78

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

Latino
type: Population
allele count: 4
allele frequency: 4.29138504452312e-4
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 69
allele frequency: 1.437799541571161e-3
allele num: 47990
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.963841138114997e-4
allele num: 10122
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.34852043212776e-4
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.415011037527594e-4
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.582278481012658e-3
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.354274e6

QD
type: SiteQuality
SIO_000300: 1.986e1

FS
type: SiteQuality
SIO_000300: 2.179e0

VQSLOD
type: SiteQuality
SIO_000300: 2.969e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.165e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

GenotypeQuality
all individuals: 32800
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.520114509567576e-4
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.36e-2

MQ
type: SiteQuality
SIO_000300: 5.804e1

FS
type: SiteQuality
SIO_000300: 2.117e0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

QD
type: SiteQuality
SIO_000300: 1.54e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.515e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

DP
type: SiteQuality
SIO_000300: 3.349329e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
all individuals: 3094
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.348816e6

VQSLOD
type: SiteQuality
SIO_000300: -2.543e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.698e0

MQ
type: SiteQuality
SIO_000300: 5.821e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.54e-1

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

DP
type: SiteQuality
SIO_000300: 3.348609e6

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

QD
type: SiteQuality
SIO_000300: 2.317e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

FS
type: SiteQuality
SIO_000300: 4.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.475e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

GenotypeQuality
all individuals: 32800
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.522780648191639e-4
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47987
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.475e0

QD
type: SiteQuality
SIO_000300: 2.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

DP
type: SiteQuality
SIO_000300: 3.348609e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.38e-2

MQ
type: SiteQuality
SIO_000300: 5.866e1

FS
type: SiteQuality
SIO_000300: 4.486e0

GenotypeQuality
all individuals: 2847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4864
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.126e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

FS
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 3.348501e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.698e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e0

QD
type: SiteQuality
SIO_000300: 1.565e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

FS
type: SiteQuality
SIO_000300: 2.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

DP
type: SiteQuality
SIO_000300: 3.347803e6

MQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.084e0

GenotypeQuality
all individuals: 2522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4803
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10105
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 1.582e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.050000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

DP
type: SiteQuality
SIO_000300: 3.346089e6

VQSLOD
type: SiteQuality
SIO_000300: -2.813e0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2435
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47973
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10105
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.584786053882726e-3
allele num: 631
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.813e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.050000000000001e0

FS
type: SiteQuality
SIO_000300: 2.715e0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.582e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 3.346089e6

GenotypeQuality
all individuals: 2432
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 32819
bin: 9.75e1
variant carriers: 124

GenotypeQuality
all individuals: 4791
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.394849785407725e-3
allele num: 9320
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 2.97029702970297e-3
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 51
allele frequency: 7.683037059355228e-3
allele num: 6638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.164556962025316e-3
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 7.713475650433623e-4
allele num: 47968
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.153e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

FS
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.31e1

QD
type: SiteQuality
SIO_000300: 1.808e1

DP
type: SiteQuality
SIO_000300: 3.350663e6

MQRankSum
type: SiteQuality
SIO_000300: -2.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.333e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.241e1

GenotypeQuality
all individuals: 2467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9317
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10085
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.340861e6

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 2.898e1

VQSLOD
type: SiteQuality
SIO_000300: -2.639e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.828e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507386192342478e-4
allele num: 6634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47929
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 5.584e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.598e0

DP
type: SiteQuality
SIO_000300: 3.335167e6

FS
type: SiteQuality
SIO_000300: 2.8494e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -1.261e1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.246e0

GenotypeQuality
all individuals: 8960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 7.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e0

DP
type: SiteQuality
SIO_000300: 3.332531e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.688e0

VQSLOD
type: SiteQuality
SIO_000300: -8.138e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

MQ
type: SiteQuality
SIO_000300: 5.628e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.118e0

GenotypeQuality
all individuals: 2421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.08620186089206e-5
allele num: 47934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

DP
type: SiteQuality
SIO_000300: 3.332531e6

MQRankSum
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 5.628e1

FS
type: SiteQuality
SIO_000300: 7.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.138e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.118e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.688e0

QD
type: SiteQuality
SIO_000300: 7.59e0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8499
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47923
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 2.076e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.765e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

DP
type: SiteQuality
SIO_000300: 3.32742e6

FS
type: SiteQuality
SIO_000300: 1.588e0

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

GenotypeQuality
all individuals: 434
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.350207711416822e-5
allele num: 47903
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10033
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.687e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

QD
type: SiteQuality
SIO_000300: 2.262e1

DP
type: SiteQuality
SIO_000300: 3.320764e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQ
type: SiteQuality
SIO_000300: 5.828e1

GenotypeQuality
all individuals: 716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32714
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2831
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9295
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47790
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.509889778046203e-4
allele num: 6623
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.753e-1

QD
type: SiteQuality
SIO_000300: 3.439e1

DP
type: SiteQuality
SIO_000300: 3.309421e6

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508523155830442e-4
allele num: 6629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9291
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47751
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9963
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.781e1

DP
type: SiteQuality
SIO_000300: 3.308436e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.014e0

VQSLOD
type: SiteQuality
SIO_000300: -8.143e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.175e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

GenotypeQuality
all individuals: 2240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9959
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47818
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.508750754375377e-4
allele num: 6628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0737e1

QD
type: SiteQuality
SIO_000300: 1.052e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.308326e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.359e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.817e1

African
type: Population
allele count: 135
allele frequency: 1.587114977662826e-2
allele num: 8506
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.605136436597111e-3
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 8.596604341285192e-4
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.255256386116864e-4
allele num: 47799
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.037344398340249e-4
allele num: 9640
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.993e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e1

DP
type: SiteQuality
SIO_000300: 1.870423e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.958e0

MQ
type: SiteQuality
SIO_000300: 5.778e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.631e1

GenotypeQuality
all individuals: 2417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.091262704420929e-5
allele num: 47818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9959
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8447
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 3.308326e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.359e0

MQ
type: SiteQuality
SIO_000300: 5.817e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.897e0

FS
type: SiteQuality
SIO_000300: 1.0737e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.052e1

GenotypeQuality
all individuals: 1562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.903931860948797e-5
allele num: 10097
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

QD
type: SiteQuality
SIO_000300: 3.368e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

DP
type: SiteQuality
SIO_000300: 4.552789e6

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10099
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.553431e6

FS
type: SiteQuality
SIO_000300: 4.608e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

MQ
type: SiteQuality
SIO_000300: 5.82e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

QD
type: SiteQuality
SIO_000300: 2.081e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 1944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.290924694271615e-4
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.897070467141726e-5
allele num: 10104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 1.875781575656524e-3
allele num: 47980
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.726456339359565e-4
allele num: 8463
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 3.532008830022075e-3
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.556091e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.061e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 6.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 5.635e1

QD
type: SiteQuality
SIO_000300: 2.025e1

GenotypeQuality
all individuals: 7305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084071441969031e-5
allele num: 47983
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10101
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.472e1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

DP
type: SiteQuality
SIO_000300: 4.558448e6

QD
type: SiteQuality
SIO_000300: 1.323e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -7.859e-1

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.145462347135808e-4
allele num: 9322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.558768e6

MQ
type: SiteQuality
SIO_000300: 5.45e1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

FS
type: SiteQuality
SIO_000300: 1.228e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.08e-2

QD
type: SiteQuality
SIO_000300: 1.748e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.818e0

VQSLOD
type: SiteQuality
SIO_000300: -2.394e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 1042
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41572
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3272
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10103
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.724781478856603e-4
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47982
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.544e1

VQSLOD
type: SiteQuality
SIO_000300: -3.62e-1

QD
type: SiteQuality
SIO_000300: 2.19e1

FS
type: SiteQuality
SIO_000300: 4.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 4.559471e6

GenotypeQuality
all individuals: 1622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.93589236248516e-4
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.084071441969031e-4
allele num: 47983
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.778e1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

FS
type: SiteQuality
SIO_000300: 2.018e0

DP
type: SiteQuality
SIO_000300: 4.561477e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 1.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.343e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

GenotypeQuality
all individuals: 1997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47979
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.343e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.973e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 4.561673e6

GenotypeQuality
all individuals: 1046
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47979
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.973e0

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 4.561673e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.167969157028238e-5
allele num: 47985
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.69e1

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

QD
type: SiteQuality
SIO_000300: 3.032e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e0

DP
type: SiteQuality
SIO_000300: 4.56604e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

GenotypeQuality
all individuals: 1654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8473
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47991
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.57e1

VQSLOD
type: SiteQuality
SIO_000300: -8.310999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.933e1

DP
type: SiteQuality
SIO_000300: 4.567657e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.976089319237229e-4
allele num: 10121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.041883725776203e-4
allele num: 47990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.568747e6

MQRankSum
type: SiteQuality
SIO_000300: -6.815e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.764e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.663e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e0

QD
type: SiteQuality
SIO_000300: 1.026e1

VQSLOD
type: SiteQuality
SIO_000300: -6.318e0

MQ
type: SiteQuality
SIO_000300: 5.212e1

GenotypeQuality
all individuals: 1219
bin: 8.25e1
variant carriers: 58

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 59

GenotypeQuality
all individuals: 45132
bin: 9.75e1
variant carriers: 40073

East Asian
type: Population
allele count: 2177
allele frequency: 3.286533816425121e-1
allele num: 6624
num of homozygotes: 250

Latino
type: Population
allele count: 6789
allele frequency: 7.292158968850698e-1
allele num: 9310
num of homozygotes: 1939

European (Finnish)
type: Population
allele count: 2379
allele frequency: 5.266769980075271e-1
allele num: 4517
num of homozygotes: 325

African
type: Population
allele count: 6233
allele frequency: 7.334666980465993e-1
allele num: 8498
num of homozygotes: 1783

European (Non-Finnish)
type: Population
allele count: 27823
allele frequency: 5.802623620930573e-1
allele num: 47949
num of homozygotes: 4958

South Asian
type: Population
allele count: 4505
allele frequency: 4.452460960664163e-1
allele num: 10118
num of homozygotes: 369