X-1471383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471383
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471383
    reference: chr 0
allele count: 3
allele frequency: 2.511258810332993e-5
allele num: 119462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.366C>T
  hgvsp: ENST00000432757.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.366C>T
  hgvsp: ENST00000381469.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.600C>T
  hgvsp: ENST00000331035.4:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 205
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  variant carriers: 0
hgvs: p.Val200Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-1471384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471384
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471384
    reference: chr 0
allele count: 1
allele frequency: 8.373526259378349e-6
allele num: 119424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.367G>A
  hgvsp: ENSP00000414867.1:p.Val123Ile
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.367G>A
  hgvsp: ENSP00000370878.2:p.Val123Ile
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.601G>A
  hgvsp: ENSP00000327890.4:p.Val201Ile
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 60
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  variant carriers: 0
hgvs: p.Val201Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-1471391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471391
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471391
    reference: chr 0
allele count: 1
allele frequency: 8.450085345861994e-6
allele num: 118342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.374C>T
  hgvsp: ENSP00000414867.1:p.Ser125Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.374C>T
  hgvsp: ENSP00000370878.2:p.Ser125Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.608C>T
  hgvsp: ENSP00000327890.4:p.Ser203Leu
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser203Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

X-1471400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471400
    reference: chr 0
allele count: 4
allele frequency: 3.469993233513194e-5
allele num: 115274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+1G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+1G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+1G>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4934
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  variant carriers: 4
hgvs: c.616+1G>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-1471402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471402
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471402
    reference: chr 0
allele count: 1
allele frequency: 8.793218669761879e-6
allele num: 113724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+3G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+3G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+3G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
hgvs: c.616+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-1471407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471407
    reference: chr 0
allele count: 1
allele frequency: 8.897588753447816e-6
allele num: 112390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+8G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+8G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+8G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
hgvs: c.616+8G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

X-1471409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471409
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471409
    reference: chr 0
allele count: 2
allele frequency: 1.795719005889958e-5
allele num: 111376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+10C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+10C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+10C>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

X-1471410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471410
    reference: chr 0
allele count: 61
allele frequency: 5.490549054905491e-4
allele num: 111100
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+11C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+11C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+11C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-1471411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471411
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471411
    reference: chr 0
allele count: 2
allele frequency: 1.801671951571058e-5
allele num: 111008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+12G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+12G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+12G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
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site quality: MQRankSum
site quality: VQSLOD
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X-1471412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471412
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471412
    reference: chr 0
allele count: 1
allele frequency: 9.022176509861239e-6
allele num: 110838
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+13G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+13G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000185291
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  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+13G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
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site quality: DP
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site quality: InbreedingCoeff

X-1471416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471416
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471416
    reference: chr 0
allele count: 1
allele frequency: 9.174311926605504e-6
allele num: 109000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+17A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+17A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
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  gene symbol: IL3RA
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  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
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X-1471419-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471419
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471419
    reference: chr 0
allele count: 1
allele frequency: 9.257030714827911e-6
allele num: 108026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+20C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+20C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+20C>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
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X-1471421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471421
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471421
    reference: chr 0
allele count: 1
allele frequency: 9.269558769002595e-6
allele num: 107880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+22C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+22C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+22C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
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filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-1471436-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471436
    reference: chr 0
allele count: 2
allele frequency: 1.933226361474665e-5
allele num: 103454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+37C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+37C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+37C>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1963
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

X-1471436-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471436
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471434
    reference: chr 0
allele count: 1
allele frequency: 9.666131807373325e-6
allele num: 103454
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+40_616+41delTG
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+40_382+41delTG
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+40_382+41delTG
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: CTG
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-1471437-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471437
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471437
    reference: chr 0
allele count: 15
allele frequency: 1.453911020645536e-4
allele num: 103170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+38T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+38T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+38T>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
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site quality: VQSLOD

X-1471447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471447
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471447
    reference: chr 0
allele count: 6
allele frequency: 6.330449461911796e-5
allele num: 94780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+48C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+48C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+48C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum

X-1471448-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001471448
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001471448
    reference: chr 0
allele count: 2
allele frequency: 2.10300519442283e-5
allele num: 95102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.382+49G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.616+49G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.382+49G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-1475063-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475063
    reference: chr 0
allele count: 1
allele frequency: 8.325978718798394e-6
allele num: 120106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-51G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-51G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-51G>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

X-1475066-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475066
    reference: chr 0
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-48T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-48T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-48T>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

X-1475069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475069
    reference: chr 0
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-45A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-45A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-45A>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-1475070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475070
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475070
    reference: chr 0
allele count: 1
allele frequency: 8.348499774590506e-6
allele num: 119782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-44T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-44T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-44T>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-1475073-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475073
    reference: chr 0
allele count: 2
allele frequency: 1.672548462091689e-5
allele num: 119578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-41C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-41C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-41C>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-1475073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475073
    reference: chr 0
allele count: 16
allele frequency: 1.338038769673351e-4
allele num: 119578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-41C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-41C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-41C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1160
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 466
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-1475075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475075
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475075
    reference: chr 0
allele count: 2
allele frequency: 1.674284661878213e-5
allele num: 119454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-39T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-39T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-39T>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

X-1475077-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475077
    reference: chr 0
allele count: 6
allele frequency: 5.037275841225066e-5
allele num: 119112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-37T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-37T>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-37T>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29144
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12342
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-1475079-CTCCTAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475079
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475072
    reference: chr 0
allele count: 11448
allele frequency: 9.489389920424403e-2
allele num: 120640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-27_383-21delTCCTAAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-27_617-21delTCCTAAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-27_383-21delTCCTAAA
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 4.75e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.75e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 5.75e1
  variant carriers: 566
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.75e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 6.25e1
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 8.25e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 8.75e1
  variant carriers: 619
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 9.75e1
  variant carriers: 2604
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.25e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 4.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.75e1
  variant carriers: 770
genotype depth: GenotypeDepth
  all individuals: 6396
  bin: 3.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.25e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 5.25e1
  variant carriers: 526
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 11710
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 28237
  bin: 6.25e1
  variant carriers: 11
num of homozygotes: 640
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CTCCTAAA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

X-1475085-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475085
    reference: chr 0
allele count: 1498
allele frequency: 1.50377449405718e-2
allele num: 99616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-29A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-29A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-29A>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8339
  bin: 3.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6027
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 6.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 9.75e1
  variant carriers: 1379
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 115
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-1475088-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475088
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475088
    reference: chr 0
allele count: 3
allele frequency: 2.550846881164547e-5
allele num: 117608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-26C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-26C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-26C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13928
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

X-1475088-CCTAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475088
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475084
    reference: chr 0
allele count: 4
allele frequency: 3.401129174886062e-5
allele num: 117608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-25_383-22delCTAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-25_383-22delCTAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-25_617-22delCTAA
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33970
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: CCTAA
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-1475089-CTAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475086
    reference: chr 0
allele count: 1
allele frequency: 8.377594960038872e-6
allele num: 119366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-24_383-22delTAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-24_383-22delTAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-24_617-22delTAA
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3226
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CTAA
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-1475090-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475090
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475088
    reference: chr 0
allele count: 1
allele frequency: 8.392218734789103e-6
allele num: 119158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-21_383-20delAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-21_383-20delAA
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-21_617-20delAA
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14191
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: TAA
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

X-1475092-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475092
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475092
    reference: chr 0
allele count: 4
allele frequency: 3.329005626019508e-5
allele num: 120156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-22A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-22A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-22A>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1193
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-1475095-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475095
    reference: chr 0
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-19G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-19G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-19G>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 585
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-1475095-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475095
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475095
    reference: chr 0
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-19G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-19G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-19G>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14531
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

X-1475109-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475109
    reference: chr 0
allele count: 1
allele frequency: 8.256547442121603e-6
allele num: 121116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-5G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-5G>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-5G>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9272
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
hgvs: c.617-5G>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

X-1475112-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475112
    reference: chr 0
allele count: 8
allele frequency: 6.602948216378613e-5
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-2A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-2A>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-2A>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
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genotype depth: GenotypeDepth
  all individuals: 2500
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.617-2A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-1475113-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475113
    reference: chr 0
allele count: 2
allele frequency: 1.650737054094653e-5
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.383-1G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.383-1G>C
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.617-1G>C
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36833
  bin: 6.25e1
  variant carriers: 0
hgvs: c.617-1G>C
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

X-1475115-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475115
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475115
    reference: chr 0
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.384G>C
  hgvsp: ENSP00000414867.1:p.Glu128Asp
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.384G>C
  hgvsp: ENSP00000370878.2:p.Glu128Asp
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.618G>C
  hgvsp: ENSP00000327890.4:p.Glu206Asp
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1161
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 909
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
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  variant carriers: 0
hgvs: p.Glu206Asp
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-1475116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475116
    reference: chr 0
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.385A>G
  hgvsp: ENSP00000370878.2:p.Ile129Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.619A>G
  hgvsp: ENSP00000327890.4:p.Ile207Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.385A>G
  hgvsp: ENSP00000414867.1:p.Ile129Val
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 907
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ile207Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-1475123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475123
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475123
    reference: chr 0
allele count: 2
allele frequency: 1.650219479190732e-5
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.626C>T
  hgvsp: ENSP00000327890.4:p.Thr209Ile
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.392C>T
  hgvsp: ENSP00000414867.1:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.392C>T
  hgvsp: ENSP00000370878.2:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4769
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 31
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hgvs: p.Thr209Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-1475125-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475125
    reference: chr 0
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.628C>A
  hgvsp: ENSP00000327890.4:p.Pro210Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.394C>A
  hgvsp: ENSP00000414867.1:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.394C>A
  hgvsp: ENSP00000370878.2:p.Pro132Thr
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro210Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

X-1475129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475129
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475129
    reference: chr 0
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.632C>T
  hgvsp: ENSP00000327890.4:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.398C>T
  hgvsp: ENSP00000370878.2:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.398C>T
  hgvsp: ENSP00000414867.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro211Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

X-1475130-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475130
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475129
    reference: chr 0
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.635delA
  hgvsp: ENSP00000327890.4:p.Asn212ThrfsTer2
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.401delA
  hgvsp: ENSP00000370878.2:p.Asn134ThrfsTer2
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.401delA
  hgvsp: ENSP00000414867.1:p.Asn134ThrfsTer2
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
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genotype quality: GenotypeQuality
  all individuals: 36959
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn212ThrfsTer2
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: CA
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-1475134-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475134
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475134
    reference: chr 0
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.637A>G
  hgvsp: ENSP00000327890.4:p.Met213Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.403A>G
  hgvsp: ENSP00000370878.2:p.Met135Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.403A>G
  hgvsp: ENSP00000414867.1:p.Met135Val
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10222
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
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hgvs: p.Met213Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-1475135-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475135
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475135
    reference: chr 0
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.404T>C
  hgvsp: ENSP00000370878.2:p.Met135Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.404T>C
  hgvsp: ENSP00000414867.1:p.Met135Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.638T>C
  hgvsp: ENSP00000327890.4:p.Met213Thr
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 14641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met213Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-1475142-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475142
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475142
    reference: chr 0
allele count: 4
allele frequency: 3.298588204248581e-5
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.645A>G
  hgvsp: ENST00000331035.4:c.645A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.411A>G
  hgvsp: ENST00000381469.2:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.411A>G
  hgvsp: ENST00000432757.1:c.411A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala215Ala
num of homozygotes: 1
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-1475150-ATAAGACAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475150
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475142
    reference: chr 0
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.420_427delTAAGACAC
  hgvsp: ENSP00000370878.2:p.Asn140LysfsTer19
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.420_427delTAAGACAC
  hgvsp: ENSP00000414867.1:p.Asn140LysfsTer19
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.654_661delTAAGACAC
  hgvsp: ENSP00000327890.4:p.Asn218LysfsTer19
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn218LysfsTer19
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: ATAAGACAC
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-1475151-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475151
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475150
    reference: chr 0
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.422delA
  hgvsp: ENSP00000370878.2:p.Lys141ArgfsTer10
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.656delA
  hgvsp: ENSP00000327890.4:p.Lys219ArgfsTer10
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.422delA
  hgvsp: ENSP00000414867.1:p.Lys141ArgfsTer10
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 209
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14641
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys219ArgfsTer10
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: TA
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-1475157-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475157
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475157
    reference: chr 0
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.660A>G
  hgvsp: ENST00000331035.4:c.660A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.426A>G
  hgvsp: ENST00000381469.2:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.426A>G
  hgvsp: ENST00000432757.1:c.426A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2751
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37060
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr220Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

X-1475158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475158
    reference: chr 0
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.427C>T
  hgvsp: ENSP00000370878.2:p.His143Tyr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.661C>T
  hgvsp: ENSP00000327890.4:p.His221Tyr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.427C>T
  hgvsp: ENSP00000414867.1:p.His143Tyr
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14641
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His221Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

X-1475160-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475160
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475160
    reference: chr 0
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.429T>A
  hgvsp: ENSP00000370878.2:p.His143Gln
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.663T>A
  hgvsp: ENSP00000327890.4:p.His221Gln
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.429T>A
  hgvsp: ENSP00000414867.1:p.His143Gln
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His221Gln
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-1475160-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475160
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475160
    reference: chr 0
allele count: 2
allele frequency: 1.649022129876983e-5
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.429T>C
  hgvsp: ENST00000432757.1:c.429T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.429T>C
  hgvsp: ENST00000381469.2:c.429T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.663T>C
  hgvsp: ENST00000331035.4:c.663T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 213
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genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His221His
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-1475174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475174
    reference: chr 0
allele count: 208
allele frequency: 1.715181001071988e-3
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.443G>A
  hgvsp: ENSP00000370878.2:p.Trp148Ter
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.443G>A
  hgvsp: ENSP00000414867.1:p.Trp148Ter
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.677G>A
  hgvsp: ENSP00000327890.4:p.Trp226Ter
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
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  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 224
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9272
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Trp226Ter
num of homozygotes: 5
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

X-1475174-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475174
    reference: chr 0
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.677G>T
  hgvsp: ENSP00000327890.4:p.Trp226Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.443G>T
  hgvsp: ENSP00000370878.2:p.Trp148Leu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.443G>T
  hgvsp: ENSP00000414867.1:p.Trp148Leu
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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hgvs: p.Trp226Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
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site quality: QD

X-1475186-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475186
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475186
    reference: chr 0
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.455G>C
  hgvsp: ENSP00000414867.1:p.Ser152Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.455G>C
  hgvsp: ENSP00000370878.2:p.Ser152Thr
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.689G>C
  hgvsp: ENSP00000327890.4:p.Ser230Thr
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5276
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 206
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hgvs: p.Ser230Thr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-1475187-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475187
    reference: chr 0
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.456T>A
  hgvsp: ENSP00000370878.2:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.456T>A
  hgvsp: ENSP00000414867.1:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.690T>A
  hgvsp: ENSP00000327890.4:p.Ser230Arg
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser230Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
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X-1475187-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475187
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475187
    reference: chr 0
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.456T>G
  hgvsp: ENSP00000370878.2:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.690T>G
  hgvsp: ENSP00000327890.4:p.Ser230Arg
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.456T>G
  hgvsp: ENSP00000414867.1:p.Ser152Arg
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser230Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

X-1475190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475190
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475190
    reference: chr 0
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.459T>C
  hgvsp: ENST00000381469.2:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.459T>C
  hgvsp: ENST00000432757.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.693T>C
  hgvsp: ENST00000331035.4:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14666
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37071
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His231His
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

X-1475195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475195
    reference: chr 0
allele count: 3
allele frequency: 2.474634991338777e-5
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.698A>G
  hgvsp: ENSP00000327890.4:p.Asn233Ser
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.464A>G
  hgvsp: ENSP00000370878.2:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.464A>G
  hgvsp: ENSP00000414867.1:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asn233Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-1475197-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475197
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475197
    reference: chr 0
allele count: 50
allele frequency: 4.124391652231296e-4
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.700C>G
  hgvsp: ENSP00000327890.4:p.Arg234Gly
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.466C>G
  hgvsp: ENSP00000414867.1:p.Arg156Gly
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.466C>G
  hgvsp: ENSP00000370878.2:p.Arg156Gly
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37014
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg234Gly
num of homozygotes: 1
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-1475206-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475206
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475206
    reference: chr 0
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.709C>A
  hgvsp: ENSP00000327890.4:p.Arg237Ser
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.475C>A
  hgvsp: ENSP00000370878.2:p.Arg159Ser
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.475C>A
  hgvsp: ENSP00000414867.1:p.Arg159Ser
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36977
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg237Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

X-1475207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475207
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475207
    reference: chr 0
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.710G>A
  hgvsp: ENSP00000327890.4:p.Arg237His
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.476G>A
  hgvsp: ENSP00000370878.2:p.Arg159His
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.476G>A
  hgvsp: ENSP00000414867.1:p.Arg159His
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg237His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

X-1475208-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475208
    reference: chr 0
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.477C>A
  hgvsp: ENST00000381469.2:c.477C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.711C>A
  hgvsp: ENST00000331035.4:c.711C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.477C>A
  hgvsp: ENST00000432757.1:c.477C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg237Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-1475208-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475206
    reference: chr 0
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.479_480delAT
  hgvsp: ENSP00000370878.2:p.Tyr160Ter
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.713_714delAT
  hgvsp: ENSP00000327890.4:p.Tyr238Ter
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.479_480delAT
  hgvsp: ENSP00000414867.1:p.Tyr160Ter
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14653
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr238Ter
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-1475210-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475210
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475210
    reference: chr 0
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.479A>G
  hgvsp: ENSP00000414867.1:p.Tyr160Cys
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.713A>G
  hgvsp: ENSP00000327890.4:p.Tyr238Cys
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.479A>G
  hgvsp: ENSP00000370878.2:p.Tyr160Cys
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14651
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr238Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-1475214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475214
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475214
    reference: chr 0
allele count: 2
allele frequency: 1.651227687785869e-5
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.483G>A
  hgvsp: ENST00000432757.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.717G>A
  hgvsp: ENST00000331035.4:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.483G>A
  hgvsp: ENST00000381469.2:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu239Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

X-1475221-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475221
    reference: chr 0
allele count: 2
allele frequency: 1.652046059044126e-5
allele num: 121062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.490A>G
  hgvsp: ENSP00000414867.1:p.Ile164Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.724A>G
  hgvsp: ENSP00000327890.4:p.Ile242Val
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.490A>G
  hgvsp: ENSP00000370878.2:p.Ile164Val
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile242Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

X-1475224-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475224
    reference: chr 0
allele count: 97
allele frequency: 8.014939185616077e-4
allele num: 121024
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.727C>G
  hgvsp: ENSP00000327890.4:p.Gln243Glu
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000414867
  ensembl transcript: ENST00000432757
  gene symbol: IL3RA
  hgvsc: ENST00000432757.1:c.493C>G
  hgvsp: ENST00000432757.1:c.493C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.493C>G
  hgvsp: ENSP00000370878.2:p.Gln165Glu
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 95
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14567
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln243Glu
num of homozygotes: 2
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum

X-1475229-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475229
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475229
    reference: chr 0
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498G>T
  hgvsp: ENSP00000370878.2:p.Lys166Asn
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732G>T
  hgvsp: ENSP00000327890.4:p.Lys244Asn
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10201
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys244Asn
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-1475241-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475241
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475241
    reference: chr 0
allele count: 1
allele frequency: 8.617569500698023e-6
allele num: 116042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732+12C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+12C>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 3.75e1
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genotype depth: GenotypeDepth
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population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
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X-1475242-C-A
type: Variant
location: Region
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    position: 24001475242
    reference: chr 0
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    reference: chr 0
allele count: 1
allele frequency: 8.806382866301495e-6
allele num: 113554
alternate allele: A
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+13C>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732+13C>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
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filter: PASS
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population: Latino
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population: European (Finnish)
population: African
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X-1475242-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475242
    reference: chr 0
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    type: ExactPosition
    position: 24001475242
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allele count: 1
allele frequency: 8.806382866301495e-6
allele num: 113554
alternate allele: G
annotation: Annotation
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  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+13C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000327890
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  gene symbol: IL3RA
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  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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population: Other
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population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
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site quality: BaseQRankSum
site quality: InbreedingCoeff
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X-1475244-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475244
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475244
    reference: chr 0
allele count: 1
allele frequency: 9.223900972199163e-6
allele num: 108414
alternate allele: G
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+15C>G
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732+15C>G
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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reference allele: C
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site quality: InbreedingCoeff
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X-1475244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475244
    reference: chr 0
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    position: 24001475244
    reference: chr 0
allele count: 11
allele frequency: 1.014629106941908e-4
allele num: 108414
alternate allele: T
annotation: Annotation
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  ensembl protein: ENSP00000370878
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  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+15C>T
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732+15C>T
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6748
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10472
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-1475245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001475245
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001475245
    reference: chr 0
allele count: 33
allele frequency: 3.249246765522538e-4
allele num: 101562
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000327890
  ensembl transcript: ENST00000331035
  gene symbol: IL3RA
  hgvsc: ENST00000331035.4:c.732+16G>A
  variant of: http://identifiers.org/hgnc/6012
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185291
  ensembl protein: ENSP00000370878
  ensembl transcript: ENST00000381469
  gene symbol: IL3RA
  hgvsc: ENST00000381469.2:c.498+16G>A
  variant of: http://identifiers.org/hgnc/6012
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11604
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 33
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 2
  allele frequency: 3.621482634990765e-5
  allele num: 55226
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS

GenotypeQuality
all individuals: 7661
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528397627926881e-5
allele num: 65428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.28e-2

QD
type: SiteQuality
SIO_000300: 1.633e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 7.933e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.028573e6

GenotypeQuality
all individuals: 1345
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

QD
type: SiteQuality
SIO_000300: 1.271e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.027771e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeQuality
all individuals: 7407
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.805844283192783e-5
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.978e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 2.000304e6

QD
type: SiteQuality
SIO_000300: 4.94e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

GenotypeQuality
all individuals: 36202
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.571338780641106e-4
allele num: 6364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.690944881889764e-4
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63296
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.51e1

VQSLOD
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 1.905345e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
all individuals: 4929
bin: 9.75e1
variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.318716036901302e-5
allele num: 15826
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.98e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.803e0

MQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

DP
type: SiteQuality
SIO_000300: 1.84614e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.634e1

GenotypeQuality
all individuals: 1914
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.61796589327897e-5
allele num: 61806
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.356e1

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.785737e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.081e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.262962117009822e-5
allele num: 61294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 15578
num of homozygotes: 0

Other
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allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.738162e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.418e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.929260450160772e-4
allele num: 15550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

Latino
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allele count: 16
allele frequency: 1.611278952668681e-3
allele num: 9930
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.541291905151267e-5
allele num: 61150
num of homozygotes: 0

East Asian
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allele count: 38
allele frequency: 4.894384337970119e-3
allele num: 7764
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.736342e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.333e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
all individuals: 5066
bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.636607639684462e-5
allele num: 61102
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

African
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allele frequency: 1.032631144155308e-4
allele num: 9684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

DP
type: SiteQuality
SIO_000300: 1.73116e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

GenotypeQuality
all individuals: 4910
bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.010305112143867e-4
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.666277868497351e-5
allele num: 60014
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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Other
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 59506
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Latino
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African
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East Asian
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South Asian
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allele frequency: 6.575486586007364e-5
allele num: 15208
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Other
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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FS
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ReadPosRankSum
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MQRankSum
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 59420
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Other
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East Asian
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allele frequency: 1.326611833377554e-4
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.503117774819589e-5
allele num: 57092
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 14666
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East Asian
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allele frequency: 1.389274798555154e-4
allele num: 7198
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
allele num: 780
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FS
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5768
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European (Non-Finnish)
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allele frequency: 1.229969075063256e-4
allele num: 56912
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Other
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allele frequency: 1.295336787564767e-3
allele num: 772
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 4.772944224737488e-4
allele num: 14666
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QD
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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bin: 5.25e1
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Latino
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allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.79290726341741e-5
allele num: 52730
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 4
allele frequency: 6.073489219556636e-4
allele num: 6586
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VQSLOD
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QD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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FS
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.029385034837928e-4
allele num: 6602
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.514784294716432e-5
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East Asian
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South Asian
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African
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

Latino
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East Asian
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African
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allele frequency: 9.680542110358181e-5
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European (Finnish)
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South Asian
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Other
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QD
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

South Asian
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Latino
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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DP
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MQRankSum
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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allele frequency: 9.714396735962697e-5
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European (Non-Finnish)
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European (Finnish)
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East Asian
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DP
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FS
type: SiteQuality
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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Latino
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African
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Other
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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allele frequency: 3.046829773620548e-5
allele num: 65642
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.459e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
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African
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allele frequency: 0.0e0
allele num: 10274
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European (Non-Finnish)
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allele count: 15
allele frequency: 2.285122330215411e-4
allele num: 65642
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.278e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 2.675088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65530
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 15982
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Other
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allele frequency: 0.0e0
allele num: 888
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.58e0

DP
type: SiteQuality
SIO_000300: 2.677988e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.48e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.603e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.1875172265948e-5
allele num: 65306
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

QD
type: SiteQuality
SIO_000300: 1.72e1

DP
type: SiteQuality
SIO_000300: 2.682774e6

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 10718

African
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allele count: 1378
allele frequency: 1.329089506172839e-1
allele num: 10368
num of homozygotes: 99

European (Finnish)
type: Population
allele count: 370
allele frequency: 5.594194133655882e-2
allele num: 6614
num of homozygotes: 15

Other
type: Population
allele count: 91
allele frequency: 1.013363028953229e-1
allele num: 898
num of homozygotes: 6

Latino
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allele count: 550
allele frequency: 4.755317309355006e-2
allele num: 11566
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 7203
allele frequency: 1.087081195291277e-1
allele num: 66260
num of homozygotes: 403

East Asian
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allele count: 133
allele frequency: 1.53757225433526e-2
allele num: 8650
num of homozygotes: 2

South Asian
type: Population
allele count: 1723
allele frequency: 1.058093834438713e-1
allele num: 16284
num of homozygotes: 106

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

MQ
type: SiteQuality
SIO_000300: 5.065e1

FS
type: SiteQuality
SIO_000300: 2.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

QD
type: SiteQuality
SIO_000300: 7.8e0

DP
type: SiteQuality
SIO_000300: 2.932034e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 49
allele frequency: 4.667555724899981e-3
allele num: 10498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.894800666969835e-4
allele num: 52776
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 6
allele frequency: 8.21917808219178e-3
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1433
allele frequency: 1.745007306380906e-1
allele num: 8212
num of homozygotes: 115

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
SIO_000300: 1.847e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.224e-1

DP
type: SiteQuality
SIO_000300: 2.149973e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64210
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East Asian
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allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
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MQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

QD
type: SiteQuality
SIO_000300: 1.546e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

DP
type: SiteQuality
SIO_000300: 2.627383e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.672169444011836e-5
allele num: 64210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9968
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South Asian
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allele count: 1
allele frequency: 6.253908692933083e-5
allele num: 15990
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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DP
type: SiteQuality
SIO_000300: 2.627383e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.546e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.528677999266235e-5
allele num: 65416
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16158
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VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 2.596411e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.977e0

FS
type: SiteQuality
SIO_000300: 3.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

QD
type: SiteQuality
SIO_000300: 1.879e1

MQ
type: SiteQuality
SIO_000300: 5.44e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16142
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.531440472908818e-5
allele num: 65298
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10138
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 894
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.549176599035575e-5
allele num: 65946
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South Asian
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East Asian
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African
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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num of homozygotes: 0

FS
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.904e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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QD
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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Other
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Latino
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Other
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
type: SiteQuality
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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Other
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European (Finnish)
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allele frequency: 1.511944360447536e-4
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European (Non-Finnish)
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allele frequency: 1.503081316699233e-5
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South Asian
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Latino
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East Asian
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DP
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MQRankSum
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QD
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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QD
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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BaseQRankSum
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DP
type: SiteQuality
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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Latino
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Other
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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QD
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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European (Non-Finnish)
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allele num: 66582
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Latino
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European (Finnish)
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East Asian
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Other
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FS
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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Latino
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DP
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeQuality
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bin: 7.75e1
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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DP
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FS
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BaseQRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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East Asian
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Other
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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Latino
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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DP
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SIO_000300: 2.557232e6

VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.557109e6

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.973e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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African
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allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.874e1

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

MQ
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ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 2.557139e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -6.788999999999999e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 9.502418797512094e-4
allele num: 11576
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.923446816695518e-4
allele num: 10398
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 194
allele frequency: 2.912388158289798e-3
allele num: 66612
num of homozygotes: 5

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

QD
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.949e1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.79e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

ReadPosRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.007e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.924e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

DP
type: SiteQuality
SIO_000300: 2.554605e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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East Asian
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South Asian
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allele count: 0
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num of homozygotes: 0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66580
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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African
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 2.554311e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 2.543912780133252e-3
allele num: 16510
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.509762691498949e-5
allele num: 66580
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.556377e6

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
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Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

FS
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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East Asian
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South Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele num: 904
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European (Finnish)
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South Asian
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East Asian
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Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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VQSLOD
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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SIO_000300: 6.4e-1

ClippingRankSum
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DP
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SIO_000300: 2.551886e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 904
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European (Non-Finnish)
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allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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DP
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MQRankSum
type: SiteQuality
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.503036132988637e-5
allele num: 66532
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10384
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Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.549985e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.531e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.708e0

FS
type: SiteQuality
SIO_000300: 1.686e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 7.459e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 1.654e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.546865e6

VQSLOD
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 96
allele frequency: 5.825949751183396e-3
allele num: 16478
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.418e1

DP
type: SiteQuality
SIO_000300: 2.54628e6

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

South Asian
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allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.314e0

MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.254e0

DP
type: SiteQuality
SIO_000300: 2.534068e6

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15718
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63628
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African
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allele count: 1
allele frequency: 1.033698573495969e-4
allele num: 9674
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.617e0

QD
type: SiteQuality
SIO_000300: 1.42e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.991e0

DP
type: SiteQuality
SIO_000300: 2.204817e6

FS
type: SiteQuality
SIO_000300: 8.023999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0538e1

QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.79e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62146
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6390
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9386
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.079196e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.79e1

FS
type: SiteQuality
SIO_000300: 1.0538e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

Other
type: Population
allele count: 0
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East Asian
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8842
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.692505585268431e-5
allele num: 59084
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
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DP
type: SiteQuality
SIO_000300: 1.803946e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.603e1

VQSLOD
type: SiteQuality
SIO_000300: -5.35e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.015503351161059e-4
allele num: 59084
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

African
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allele count: 0
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South Asian
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East Asian
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allele count: 5
allele frequency: 6.239081607187422e-4
allele num: 8014
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MQ
type: SiteQuality
SIO_000300: 5.895e1

FS
type: SiteQuality
SIO_000300: 1.569e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.977393245883338e-5
allele num: 14332
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 30
allele frequency: 3.908285565398645e-3
allele num: 7676
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Other
type: Population
allele count: 0
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FS
type: SiteQuality
SIO_000300: 0.0e0