X-1407701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407701
    reference: chr 0
allele count: 43
allele frequency: 3.541718145128079e-4
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.393G>A
  hgvsp: ENST00000381500.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.-7G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.393G>A
  hgvsp: ENST00000381529.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.393G>A
  hgvsp: ENST00000486791.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1610G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.95G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.393G>A
  hgvsp: ENST00000381509.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.393G>A
  hgvsp: ENST00000381524.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.393G>A
  hgvsp: ENST00000355432.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.393G>A
  hgvsp: ENST00000355805.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.393G>A
  hgvsp: ENST00000417535.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.393G>A
  hgvsp: ENST00000432318.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.430G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.393G>A
  hgvsp: ENST00000412290.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.393G>A
  hgvsp: ENST00000419094.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.393G>A
  hgvsp: ENST00000361536.3:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala131Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

X-1407710-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407710
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407710
    reference: chr 0
allele count: 7
allele frequency: 5.765682656826568e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.402G>T
  hgvsp: ENSP00000394227.2:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.402G>T
  hgvsp: ENSP00000348058.2:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.402G>T
  hgvsp: ENSP00000436825.1:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.3G>T
  hgvsp: ENSP00000440491.1:p.Met1?
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.402G>T
  hgvsp: ENSP00000416437.2:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.402G>T
  hgvsp: ENSP00000370920.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.402G>T
  hgvsp: ENSP00000397452.1:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.402G>T
  hgvsp: ENSP00000370911.1:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.402G>T
  hgvsp: ENSP00000370935.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.104G>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.402G>T
  hgvsp: ENSP00000347606.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.439G>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.402G>T
  hgvsp: ENSP00000370940.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.402G>T
  hgvsp: ENSP00000410667.1:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1619G>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.402G>T
  hgvsp: ENSP00000354836.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-1407714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407714
    reference: chr 0
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.406T>C
  hgvsp: ENSP00000416437.2:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.406T>C
  hgvsp: ENSP00000410667.1:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.406T>C
  hgvsp: ENSP00000436825.1:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.406T>C
  hgvsp: ENSP00000397452.1:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.108T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.406T>C
  hgvsp: ENSP00000370920.3:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.406T>C
  hgvsp: ENSP00000347606.3:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.406T>C
  hgvsp: ENSP00000370940.3:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.406T>C
  hgvsp: ENSP00000354836.3:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.406T>C
  hgvsp: ENSP00000348058.2:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.406T>C
  hgvsp: ENSP00000370911.1:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.406T>C
  hgvsp: ENSP00000394227.2:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.406T>C
  hgvsp: ENSP00000370935.3:p.Cys136Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1623T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.443T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.7T>C
  hgvsp: ENSP00000440491.1:p.Cys3Arg
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42019
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys136Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS

X-1407716-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407716
    reference: chr 0
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1625T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.408T>C
  hgvsp: ENST00000355432.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.408T>C
  hgvsp: ENST00000432318.2:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.408T>C
  hgvsp: ENST00000381509.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.408T>C
  hgvsp: ENST00000419094.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.408T>C
  hgvsp: ENST00000486791.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.408T>C
  hgvsp: ENST00000381524.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.408T>C
  hgvsp: ENST00000412290.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.408T>C
  hgvsp: ENST00000381529.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.408T>C
  hgvsp: ENST00000355805.2:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.408T>C
  hgvsp: ENST00000417535.2:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.408T>C
  hgvsp: ENST00000381500.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.110T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.9T>C
  hgvsp: ENST00000501036.2:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.445T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.408T>C
  hgvsp: ENST00000361536.3:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys136Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-1407720-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407720
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407720
    reference: chr 0
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.412T>A
  hgvsp: ENSP00000348058.2:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1629T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.412T>A
  hgvsp: ENSP00000370940.3:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.412T>A
  hgvsp: ENSP00000370920.3:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.412T>A
  hgvsp: ENSP00000347606.3:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.412T>A
  hgvsp: ENSP00000397452.1:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.13T>A
  hgvsp: ENSP00000440491.1:p.Trp5Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.412T>A
  hgvsp: ENSP00000416437.2:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.412T>A
  hgvsp: ENSP00000370935.3:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.412T>A
  hgvsp: ENSP00000354836.3:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.412T>A
  hgvsp: ENSP00000410667.1:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.412T>A
  hgvsp: ENSP00000370911.1:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.412T>A
  hgvsp: ENSP00000394227.2:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.449T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.412T>A
  hgvsp: ENSP00000436825.1:p.Trp138Arg
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.114T>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp138Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

X-1407723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407723
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407723
    reference: chr 0
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.415G>A
  hgvsp: ENSP00000370920.3:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.452G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.415G>A
  hgvsp: ENSP00000397452.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.415G>A
  hgvsp: ENSP00000370911.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.415G>A
  hgvsp: ENSP00000394227.2:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.415G>A
  hgvsp: ENSP00000348058.2:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.415G>A
  hgvsp: ENSP00000354836.3:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.117G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.415G>A
  hgvsp: ENSP00000416437.2:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.415G>A
  hgvsp: ENSP00000410667.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.16G>A
  hgvsp: ENSP00000440491.1:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1632G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.415G>A
  hgvsp: ENSP00000370935.3:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.415G>A
  hgvsp: ENSP00000436825.1:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.415G>A
  hgvsp: ENSP00000347606.3:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.415G>A
  hgvsp: ENSP00000370940.3:p.Ala139Thr
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-1407724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407724
    reference: chr 0
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.416C>T
  hgvsp: ENSP00000416437.2:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.416C>T
  hgvsp: ENSP00000410667.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.416C>T
  hgvsp: ENSP00000370911.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.17C>T
  hgvsp: ENSP00000440491.1:p.Ala6Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.416C>T
  hgvsp: ENSP00000436825.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.416C>T
  hgvsp: ENSP00000348058.2:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.416C>T
  hgvsp: ENSP00000397452.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.416C>T
  hgvsp: ENSP00000394227.2:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.416C>T
  hgvsp: ENSP00000370920.3:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.416C>T
  hgvsp: ENSP00000354836.3:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.416C>T
  hgvsp: ENSP00000347606.3:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.416C>T
  hgvsp: ENSP00000370935.3:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.453C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.118C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1633C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.416C>T
  hgvsp: ENSP00000370940.3:p.Ala139Val
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-1407725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407725
    reference: chr 0
allele count: 4
allele frequency: 3.295978905735003e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.417G>A
  hgvsp: ENST00000381500.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.417G>A
  hgvsp: ENST00000381529.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.417G>A
  hgvsp: ENST00000355805.2:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.18G>A
  hgvsp: ENST00000501036.2:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.417G>A
  hgvsp: ENST00000417535.2:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.417G>A
  hgvsp: ENST00000419094.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.417G>A
  hgvsp: ENST00000355432.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.417G>A
  hgvsp: ENST00000381509.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.417G>A
  hgvsp: ENST00000412290.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.417G>A
  hgvsp: ENST00000361536.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.417G>A
  hgvsp: ENST00000381524.3:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.417G>A
  hgvsp: ENST00000432318.2:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.417G>A
  hgvsp: ENST00000486791.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.454G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.119G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1634G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

X-1407725-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407725
    reference: chr 0
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.417G>T
  hgvsp: ENST00000381500.1:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.417G>T
  hgvsp: ENST00000355432.3:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.417G>T
  hgvsp: ENST00000381529.3:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.417G>T
  hgvsp: ENST00000432318.2:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.417G>T
  hgvsp: ENST00000417535.2:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1634G>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.454G>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.417G>T
  hgvsp: ENST00000381509.3:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.417G>T
  hgvsp: ENST00000361536.3:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.417G>T
  hgvsp: ENST00000419094.1:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.417G>T
  hgvsp: ENST00000381524.3:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.417G>T
  hgvsp: ENST00000486791.1:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.417G>T
  hgvsp: ENST00000412290.1:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.417G>T
  hgvsp: ENST00000355805.2:c.417G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.18G>T
  hgvsp: ENST00000501036.2:c.18G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.119G>T
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala139Ala
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-1407726-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407726
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407726
    reference: chr 0
allele count: 4
allele frequency: 3.296033224014898e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.418A>C
  hgvsp: ENST00000381509.3:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.19A>C
  hgvsp: ENST00000501036.2:c.19A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.418A>C
  hgvsp: ENST00000355432.3:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.418A>C
  hgvsp: ENST00000381500.1:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.455A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.418A>C
  hgvsp: ENST00000361536.3:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.418A>C
  hgvsp: ENST00000381524.3:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.418A>C
  hgvsp: ENST00000417535.2:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1635A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.418A>C
  hgvsp: ENST00000419094.1:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.418A>C
  hgvsp: ENST00000432318.2:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.418A>C
  hgvsp: ENST00000381529.3:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.418A>C
  hgvsp: ENST00000486791.1:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.418A>C
  hgvsp: ENST00000355805.2:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.120A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.418A>C
  hgvsp: ENST00000412290.1:c.418A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg140Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS

X-1407727-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407727
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407727
    reference: chr 0
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.419G>C
  hgvsp: ENSP00000354836.3:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.419G>C
  hgvsp: ENSP00000348058.2:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.121G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.419G>C
  hgvsp: ENSP00000436825.1:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.456G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.419G>C
  hgvsp: ENSP00000370911.1:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.419G>C
  hgvsp: ENSP00000370935.3:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.419G>C
  hgvsp: ENSP00000397452.1:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.419G>C
  hgvsp: ENSP00000370920.3:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.419G>C
  hgvsp: ENSP00000370940.3:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.419G>C
  hgvsp: ENSP00000410667.1:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.419G>C
  hgvsp: ENSP00000394227.2:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.419G>C
  hgvsp: ENSP00000416437.2:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.419G>C
  hgvsp: ENSP00000347606.3:p.Arg140Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1636G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.20G>C
  hgvsp: ENSP00000440491.1:p.Arg7Thr
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42015
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg140Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

X-1407728-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407728
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407728
    reference: chr 0
allele count: 2
allele frequency: 1.648179585647652e-5
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.420G>C
  hgvsp: ENSP00000370935.3:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.21G>C
  hgvsp: ENSP00000440491.1:p.Arg7Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1637G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.420G>C
  hgvsp: ENSP00000348058.2:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.420G>C
  hgvsp: ENSP00000370940.3:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.420G>C
  hgvsp: ENSP00000370911.1:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.457G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.420G>C
  hgvsp: ENSP00000416437.2:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.420G>C
  hgvsp: ENSP00000370920.3:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.420G>C
  hgvsp: ENSP00000394227.2:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.420G>C
  hgvsp: ENSP00000410667.1:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.420G>C
  hgvsp: ENSP00000397452.1:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.420G>C
  hgvsp: ENSP00000347606.3:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.420G>C
  hgvsp: ENSP00000354836.3:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.420G>C
  hgvsp: ENSP00000436825.1:p.Arg140Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.122G>C
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg140Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-1407729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407729
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407729
    reference: chr 0
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.421G>A
  hgvsp: ENSP00000354836.3:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.421G>A
  hgvsp: ENSP00000370920.3:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.421G>A
  hgvsp: ENSP00000436825.1:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.421G>A
  hgvsp: ENSP00000370911.1:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1638G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.458G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.421G>A
  hgvsp: ENSP00000410667.1:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.421G>A
  hgvsp: ENSP00000394227.2:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.421G>A
  hgvsp: ENSP00000370940.3:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.421G>A
  hgvsp: ENSP00000348058.2:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.421G>A
  hgvsp: ENSP00000416437.2:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.421G>A
  hgvsp: ENSP00000347606.3:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.421G>A
  hgvsp: ENSP00000397452.1:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.421G>A
  hgvsp: ENSP00000370935.3:p.Gly141Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.123G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.22G>A
  hgvsp: ENSP00000440491.1:p.Gly8Ser
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42011
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly141Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

X-1407733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407733
    reference: chr 0
allele count: 492
allele frequency: 4.054722268007252e-3
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.425C>T
  hgvsp: ENSP00000347606.3:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.425C>T
  hgvsp: ENSP00000370935.3:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.425C>T
  hgvsp: ENSP00000348058.2:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.425C>T
  hgvsp: ENSP00000410667.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.425C>T
  hgvsp: ENSP00000370920.3:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.425C>T
  hgvsp: ENSP00000416437.2:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1642C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.425C>T
  hgvsp: ENSP00000370911.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.425C>T
  hgvsp: ENSP00000436825.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.425C>T
  hgvsp: ENSP00000370940.3:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.127C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.425C>T
  hgvsp: ENSP00000397452.1:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.26C>T
  hgvsp: ENSP00000440491.1:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.425C>T
  hgvsp: ENSP00000394227.2:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.462C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.425C>T
  hgvsp: ENSP00000354836.3:p.Pro142Leu
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Pro142Leu
num of homozygotes: 9
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-1407734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407734
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407734
    reference: chr 0
allele count: 12
allele frequency: 9.890055549145334e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.426G>A
  hgvsp: ENST00000381500.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.426G>A
  hgvsp: ENST00000355432.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.463G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.426G>A
  hgvsp: ENST00000381524.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.27G>A
  hgvsp: ENST00000501036.2:c.27G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1643G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.426G>A
  hgvsp: ENST00000419094.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.426G>A
  hgvsp: ENST00000361536.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.426G>A
  hgvsp: ENST00000412290.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.426G>A
  hgvsp: ENST00000355805.2:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.426G>A
  hgvsp: ENST00000432318.2:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.426G>A
  hgvsp: ENST00000381529.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.426G>A
  hgvsp: ENST00000381509.3:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.426G>A
  hgvsp: ENST00000417535.2:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.128G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.426G>A
  hgvsp: ENST00000486791.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro142Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

X-1407736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407736
    reference: chr 0
allele count: 23
allele frequency: 1.89587523492367e-4
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.428C>T
  hgvsp: ENSP00000394227.2:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.428C>T
  hgvsp: ENSP00000416437.2:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.428C>T
  hgvsp: ENSP00000436825.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1645C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.29C>T
  hgvsp: ENSP00000440491.1:p.Thr10Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.428C>T
  hgvsp: ENSP00000347606.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.428C>T
  hgvsp: ENSP00000370940.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.428C>T
  hgvsp: ENSP00000370920.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.428C>T
  hgvsp: ENSP00000370935.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.428C>T
  hgvsp: ENSP00000370911.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.428C>T
  hgvsp: ENSP00000354836.3:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.130C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.428C>T
  hgvsp: ENSP00000410667.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.465C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.428C>T
  hgvsp: ENSP00000397452.1:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.428C>T
  hgvsp: ENSP00000348058.2:p.Thr143Met
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr143Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

X-1407737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407737
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407737
    reference: chr 0
allele count: 15
allele frequency: 1.236583073650888e-4
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.429G>A
  hgvsp: ENST00000381509.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.429G>A
  hgvsp: ENST00000412290.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.429G>A
  hgvsp: ENST00000381500.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.466G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.429G>A
  hgvsp: ENST00000432318.2:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.429G>A
  hgvsp: ENST00000355432.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.429G>A
  hgvsp: ENST00000381529.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.429G>A
  hgvsp: ENST00000381524.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.429G>A
  hgvsp: ENST00000486791.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.131G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.429G>A
  hgvsp: ENST00000419094.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.429G>A
  hgvsp: ENST00000417535.2:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.429G>A
  hgvsp: ENST00000355805.2:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1646G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.30G>A
  hgvsp: ENST00000501036.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.429G>A
  hgvsp: ENST00000361536.3:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr143Thr
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

X-1407744-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407744
    reference: chr 0
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.37C>G
  hgvsp: ENSP00000440491.1:p.Arg13Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.436C>G
  hgvsp: ENSP00000354836.3:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.436C>G
  hgvsp: ENSP00000410667.1:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.436C>G
  hgvsp: ENSP00000370935.3:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.436C>G
  hgvsp: ENSP00000370940.3:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.436C>G
  hgvsp: ENSP00000370911.1:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.436C>G
  hgvsp: ENSP00000394227.2:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.138C>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.436C>G
  hgvsp: ENSP00000416437.2:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.436C>G
  hgvsp: ENSP00000347606.3:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.436C>G
  hgvsp: ENSP00000370920.3:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.473C>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.436C>G
  hgvsp: ENSP00000436825.1:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1653C>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.436C>G
  hgvsp: ENSP00000397452.1:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.436C>G
  hgvsp: ENSP00000348058.2:p.Arg146Gly
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg146Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

X-1407744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407744
    reference: chr 0
allele count: 17
allele frequency: 1.401899986805647e-4
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.436C>T
  hgvsp: ENSP00000410667.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.436C>T
  hgvsp: ENSP00000436825.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.436C>T
  hgvsp: ENSP00000354836.3:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.37C>T
  hgvsp: ENSP00000440491.1:p.Arg13Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.436C>T
  hgvsp: ENSP00000348058.2:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.436C>T
  hgvsp: ENSP00000397452.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.436C>T
  hgvsp: ENSP00000370920.3:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1653C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.138C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.436C>T
  hgvsp: ENSP00000370940.3:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.436C>T
  hgvsp: ENSP00000370911.1:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.436C>T
  hgvsp: ENSP00000347606.3:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.473C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.436C>T
  hgvsp: ENSP00000394227.2:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.436C>T
  hgvsp: ENSP00000370935.3:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.436C>T
  hgvsp: ENSP00000416437.2:p.Arg146Cys
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41717
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg146Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

X-1407745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407745
    reference: chr 0
allele count: 6
allele frequency: 4.948208748433067e-5
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.437G>A
  hgvsp: ENSP00000436825.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.474G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.437G>A
  hgvsp: ENSP00000370940.3:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.437G>A
  hgvsp: ENSP00000347606.3:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.437G>A
  hgvsp: ENSP00000394227.2:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.437G>A
  hgvsp: ENSP00000416437.2:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.437G>A
  hgvsp: ENSP00000397452.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.437G>A
  hgvsp: ENSP00000370920.3:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.437G>A
  hgvsp: ENSP00000348058.2:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.437G>A
  hgvsp: ENSP00000354836.3:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.38G>A
  hgvsp: ENSP00000440491.1:p.Arg13His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.437G>A
  hgvsp: ENSP00000370935.3:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.437G>A
  hgvsp: ENSP00000370911.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1654G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.139G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.437G>A
  hgvsp: ENSP00000410667.1:p.Arg146His
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg146His
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-1407745-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407745
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407745
    reference: chr 0
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.437G>C
  hgvsp: ENSP00000347606.3:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.437G>C
  hgvsp: ENSP00000416437.2:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.437G>C
  hgvsp: ENSP00000370920.3:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.437G>C
  hgvsp: ENSP00000370940.3:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.139G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.38G>C
  hgvsp: ENSP00000440491.1:p.Arg13Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.437G>C
  hgvsp: ENSP00000436825.1:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.437G>C
  hgvsp: ENSP00000370935.3:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1654G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.437G>C
  hgvsp: ENSP00000397452.1:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.437G>C
  hgvsp: ENSP00000354836.3:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.437G>C
  hgvsp: ENSP00000348058.2:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.437G>C
  hgvsp: ENSP00000370911.1:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.437G>C
  hgvsp: ENSP00000410667.1:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.437G>C
  hgvsp: ENSP00000394227.2:p.Arg146Pro
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.474G>C
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg146Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

X-1407749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407749
    reference: chr 0
allele count: 8
allele frequency: 6.598264656395368e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.441C>T
  hgvsp: ENST00000355432.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.441C>T
  hgvsp: ENST00000355805.2:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.441C>T
  hgvsp: ENST00000381524.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.441C>T
  hgvsp: ENST00000381529.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.478C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.441C>T
  hgvsp: ENST00000419094.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.42C>T
  hgvsp: ENST00000501036.2:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.441C>T
  hgvsp: ENST00000381509.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.441C>T
  hgvsp: ENST00000381500.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.441C>T
  hgvsp: ENST00000486791.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1658C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.441C>T
  hgvsp: ENST00000361536.3:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.143C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.441C>T
  hgvsp: ENST00000417535.2:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.441C>T
  hgvsp: ENST00000412290.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.441C>T
  hgvsp: ENST00000432318.2:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp147Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

X-1407750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407750
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407750
    reference: chr 0
allele count: 2
allele frequency: 1.649675014022238e-5
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.442G>A
  hgvsp: ENSP00000436825.1:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.442G>A
  hgvsp: ENSP00000354836.3:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.442G>A
  hgvsp: ENSP00000397452.1:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.442G>A
  hgvsp: ENSP00000348058.2:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.43G>A
  hgvsp: ENSP00000440491.1:p.Val15Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.442G>A
  hgvsp: ENSP00000370920.3:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.479G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1659G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.442G>A
  hgvsp: ENSP00000370911.1:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.442G>A
  hgvsp: ENSP00000370940.3:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.442G>A
  hgvsp: ENSP00000347606.3:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.442G>A
  hgvsp: ENSP00000370935.3:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.442G>A
  hgvsp: ENSP00000410667.1:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.144G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.442G>A
  hgvsp: ENSP00000394227.2:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.442G>A
  hgvsp: ENSP00000416437.2:p.Val148Ile
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val148Ile
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-1407752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407752
    reference: chr 0
allele count: 2
allele frequency: 1.649811096629436e-5
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.444C>T
  hgvsp: ENST00000419094.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.444C>T
  hgvsp: ENST00000381524.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.444C>T
  hgvsp: ENST00000381529.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.444C>T
  hgvsp: ENST00000486791.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.444C>T
  hgvsp: ENST00000355805.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.444C>T
  hgvsp: ENST00000381500.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.444C>T
  hgvsp: ENST00000381509.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.444C>T
  hgvsp: ENST00000432318.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.146C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.444C>T
  hgvsp: ENST00000361536.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.444C>T
  hgvsp: ENST00000417535.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1661C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.444C>T
  hgvsp: ENST00000412290.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.45C>T
  hgvsp: ENST00000501036.2:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.444C>T
  hgvsp: ENST00000355432.3:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.481C>T
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val148Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

X-1407755-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407755
    reference: chr 0
allele count: 11
allele frequency: 9.074559883845633e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.484G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.447G>A
  hgvsp: ENST00000381529.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.447G>A
  hgvsp: ENST00000355432.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.447G>A
  hgvsp: ENST00000381500.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.48G>A
  hgvsp: ENST00000501036.2:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.447G>A
  hgvsp: ENST00000381509.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.447G>A
  hgvsp: ENST00000486791.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1664G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.447G>A
  hgvsp: ENST00000419094.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.447G>A
  hgvsp: ENST00000412290.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.447G>A
  hgvsp: ENST00000432318.2:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.149G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.447G>A
  hgvsp: ENST00000355805.2:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.447G>A
  hgvsp: ENST00000417535.2:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.447G>A
  hgvsp: ENST00000361536.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.447G>A
  hgvsp: ENST00000381524.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41708
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln149Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

X-1407755-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407755
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407755
    reference: chr 0
allele count: 5
allele frequency: 4.124799947202561e-5
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.447G>C
  hgvsp: ENSP00000397452.1:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.447G>C
  hgvsp: ENSP00000370935.3:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.447G>C
  hgvsp: ENSP00000347606.3:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.447G>C
  hgvsp: ENSP00000370911.1:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.447G>C
  hgvsp: ENSP00000394227.2:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.447G>C
  hgvsp: ENSP00000416437.2:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.447G>C
  hgvsp: ENSP00000436825.1:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.48G>C
  hgvsp: ENSP00000440491.1:p.Gln16His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.447G>C
  hgvsp: ENSP00000354836.3:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.447G>C
  hgvsp: ENSP00000370940.3:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.447G>C
  hgvsp: ENSP00000348058.2:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.149G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.484G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.447G>C
  hgvsp: ENSP00000370920.3:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.447G>C
  hgvsp: ENSP00000410667.1:p.Gln149His
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1664G>C
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln149His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-1407763-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407763
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407763
    reference: chr 0
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.455T>C
  hgvsp: ENSP00000347606.3:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.455T>C
  hgvsp: ENSP00000436825.1:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.455T>C
  hgvsp: ENSP00000348058.2:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.455T>C
  hgvsp: ENSP00000370920.3:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.455T>C
  hgvsp: ENSP00000370940.3:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.455T>C
  hgvsp: ENSP00000397452.1:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.455T>C
  hgvsp: ENSP00000410667.1:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.455T>C
  hgvsp: ENSP00000370935.3:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.56T>C
  hgvsp: ENSP00000440491.1:p.Leu19Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.492T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.455T>C
  hgvsp: ENSP00000370911.1:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.455T>C
  hgvsp: ENSP00000416437.2:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.157T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1672T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.455T>C
  hgvsp: ENSP00000394227.2:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.455T>C
  hgvsp: ENSP00000354836.3:p.Leu152Ser
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu152Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-1407770-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407770
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407770
    reference: chr 0
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.462A>T
  hgvsp: ENST00000381524.3:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.462A>T
  hgvsp: ENST00000355805.2:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.462A>T
  hgvsp: ENST00000412290.1:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.63A>T
  hgvsp: ENST00000501036.2:c.63A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.164A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.462A>T
  hgvsp: ENST00000432318.2:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.462A>T
  hgvsp: ENST00000419094.1:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.462A>T
  hgvsp: ENST00000355432.3:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.462A>T
  hgvsp: ENST00000381509.3:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.462A>T
  hgvsp: ENST00000486791.1:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.462A>T
  hgvsp: ENST00000361536.3:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.462A>T
  hgvsp: ENST00000381500.1:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.462A>T
  hgvsp: ENST00000381529.3:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1679A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.499A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.462A>T
  hgvsp: ENST00000417535.2:c.462A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41702
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile154Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-1407772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407772
    reference: chr 0
allele count: 20
allele frequency: 1.650737054094653e-4
allele num: 121158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.464G>A
  hgvsp: ENSP00000410667.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.464G>A
  hgvsp: ENSP00000370911.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.464G>A
  hgvsp: ENSP00000370940.3:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.464G>A
  hgvsp: ENSP00000436825.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.464G>A
  hgvsp: ENSP00000370920.3:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.464G>A
  hgvsp: ENSP00000347606.3:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.166G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.464G>A
  hgvsp: ENSP00000416437.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.501G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.464G>A
  hgvsp: ENSP00000348058.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.464G>A
  hgvsp: ENSP00000397452.1:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.65G>A
  hgvsp: ENSP00000440491.1:p.Arg22Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.464G>A
  hgvsp: ENSP00000354836.3:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.464G>A
  hgvsp: ENSP00000370935.3:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.464G>A
  hgvsp: ENSP00000394227.2:p.Arg155Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1681G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41702
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Gln
num of homozygotes: 2
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-1407778-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407779
    reference: chr 0
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.175dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473dupA
  hgvsp: ENSP00000370920.3:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473dupA
  hgvsp: ENSP00000397452.1:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473dupA
  hgvsp: ENSP00000347606.3:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473dupA
  hgvsp: ENSP00000394227.2:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473dupA
  hgvsp: ENSP00000348058.2:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473dupA
  hgvsp: ENSP00000416437.2:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473dupA
  hgvsp: ENSP00000370911.1:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473dupA
  hgvsp: ENSP00000354836.3:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473dupA
  hgvsp: ENSP00000370935.3:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473dupA
  hgvsp: ENSP00000370940.3:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1690dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74dupA
  hgvsp: ENSP00000440491.1:p.Arg26GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473dupA
  hgvsp: ENSP00000436825.1:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473dupA
  hgvsp: ENSP00000410667.1:p.Arg159GlufsTer24
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg159GlufsTer24
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-1407793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407793
    reference: chr 0
allele count: 71
allele frequency: 8.342537541418937e-4
allele num: 85106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1702C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.187C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+12C>T
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

X-1407796-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407796
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407794
    reference: chr 0
allele count: 64500
allele frequency: 5.329521417239556e-1
allele num: 121024
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+16_74+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+16_510+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.191_192delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1706_244+1707delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+16_473+17delAT
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 6.75e1
  variant carriers: 690
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 6.25e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 5.75e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 7.75e1
  variant carriers: 1182
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 9.25e1
  variant carriers: 2170
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 18040
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: CAT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-1407797-ATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407797
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407795
    reference: chr 0
allele count: 12
allele frequency: 4.271070615034169e-4
allele num: 28096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.194_195delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1709_244+1710delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+19_74+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+19_510+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+19_473+20delTG
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: ATG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-1407798-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407798
    reference: chr 0
allele count: 1
allele frequency: 1.348654043264822e-5
allele num: 74148
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1707T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.192T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+17T>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-1407799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407799
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407799
    reference: chr 0
allele count: 2
allele frequency: 7.127075760815338e-5
allele num: 28062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1708G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.193G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+18G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

X-1407800-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407800
    reference: chr 0
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1709T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.194T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+19T>G
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14249
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-1407803-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407803
    reference: chr 0
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1712A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.197A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+22A>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+22A>T
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

X-1407804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407804
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407804
    reference: chr 0
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1713G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.198G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+23G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+23G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-1407808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407808
    reference: chr 0
allele count: 1
allele frequency: 8.265965712774223e-6
allele num: 120978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.202T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+27T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1717T>C
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-1407810-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407810
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407810
    reference: chr 0
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.204T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1719T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+29T>C
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

X-1407816-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407816
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407816
    reference: chr 0
allele count: 2
allele frequency: 1.654122901331569e-5
allele num: 120910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1725A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.210A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+35A>C
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-1407818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407818
    reference: chr 0
allele count: 28
allele frequency: 2.316116864639513e-4
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1727G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.212G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+37G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-1407821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407821
    reference: chr 0
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.215G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+40G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1730G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

X-1407824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407824
    reference: chr 0
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1733A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.218A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+43A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+43A>G
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

X-1407825-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407825
    reference: chr 0
allele count: 19
allele frequency: 1.571988814058544e-4
allele num: 120866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.219T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1734T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+44T>C
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-1407826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407826
    reference: chr 0
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.220G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+45G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1735G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

X-1407827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407827
    reference: chr 0
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.221G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+46G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1736G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-1407828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407828
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407828
    reference: chr 0
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.222G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1737G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+47G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-1407830-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001407830
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001407831
    reference: chr 0
allele count: 2
allele frequency: 1.655026314918407e-5
allele num: 120844
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.74+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+1745dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000478256
  gene symbol: CSF2RA
  hgvsc: ENST00000478256.1:n.230dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.510+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.473+55dupA
  variant of: http://identifiers.org/hgnc/2435
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

X-1409180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409180
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409180
    reference: chr 0
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3089G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-50G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-1409195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409195
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409195
    reference: chr 0
allele count: 5
allele frequency: 4.12452774157359e-5
allele num: 121226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3104C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-35C>T
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

X-1409196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409196
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409196
    reference: chr 0
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3105C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-34C>T
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-1409199-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409199
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409199
    reference: chr 0
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-31A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3108A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-31A>G
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3980
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-1409203-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409203
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409203
    reference: chr 0
allele count: 3
allele frequency: 2.472432378974435e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3112C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-27C>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-27C>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-1409221-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409221
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409221
    reference: chr 0
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3130A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474-9A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75-9A>C
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

X-1409230-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409230
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409230
    reference: chr 0
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.474G>A
  hgvsp: ENST00000355432.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.474G>A
  hgvsp: ENST00000381500.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.474G>A
  hgvsp: ENST00000417535.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.75G>A
  hgvsp: ENST00000501036.2:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.474G>A
  hgvsp: ENST00000361536.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.511G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.474G>A
  hgvsp: ENST00000432318.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.474G>A
  hgvsp: ENST00000381509.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.474G>A
  hgvsp: ENST00000355805.2:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.474G>A
  hgvsp: ENST00000412290.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.474G>A
  hgvsp: ENST00000381529.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3139G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.474G>A
  hgvsp: ENST00000381524.3:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.474G>A
  hgvsp: ENST00000486791.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.474G>A
  hgvsp: ENST00000419094.1:c.474G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.474G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-1409235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409235
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409235
    reference: chr 0
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.516G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.479G>A
  hgvsp: ENSP00000370940.3:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.479G>A
  hgvsp: ENSP00000436825.1:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.80G>A
  hgvsp: ENSP00000440491.1:p.Arg27Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.479G>A
  hgvsp: ENSP00000370935.3:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.479G>A
  hgvsp: ENSP00000397452.1:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.479G>A
  hgvsp: ENSP00000370920.3:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.479G>A
  hgvsp: ENSP00000394227.2:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.479G>A
  hgvsp: ENSP00000348058.2:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.479G>A
  hgvsp: ENSP00000416437.2:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.479G>A
  hgvsp: ENSP00000354836.3:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.479G>A
  hgvsp: ENSP00000347606.3:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3144G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.479G>A
  hgvsp: ENSP00000370911.1:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.479G>A
  hgvsp: ENSP00000410667.1:p.Arg160Lys
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg160Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-1409236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409236
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409236
    reference: chr 0
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.480G>A
  hgvsp: ENST00000432318.2:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.480G>A
  hgvsp: ENST00000412290.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.480G>A
  hgvsp: ENST00000486791.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.480G>A
  hgvsp: ENST00000361536.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.480G>A
  hgvsp: ENST00000355432.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.480G>A
  hgvsp: ENST00000381529.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.480G>A
  hgvsp: ENST00000355805.2:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.480G>A
  hgvsp: ENST00000381509.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.480G>A
  hgvsp: ENST00000381524.3:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3145G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.480G>A
  hgvsp: ENST00000417535.2:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.480G>A
  hgvsp: ENST00000419094.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.81G>A
  hgvsp: ENST00000501036.2:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.517G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.480G>A
  hgvsp: ENST00000381500.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg160Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-1409237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409237
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409237
    reference: chr 0
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.481A>G
  hgvsp: ENSP00000394227.2:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3146A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.481A>G
  hgvsp: ENSP00000416437.2:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.481A>G
  hgvsp: ENSP00000354836.3:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.481A>G
  hgvsp: ENSP00000370940.3:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.481A>G
  hgvsp: ENSP00000436825.1:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.481A>G
  hgvsp: ENSP00000397452.1:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.481A>G
  hgvsp: ENSP00000370911.1:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.481A>G
  hgvsp: ENSP00000370935.3:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.481A>G
  hgvsp: ENSP00000370920.3:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.481A>G
  hgvsp: ENSP00000348058.2:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.481A>G
  hgvsp: ENSP00000410667.1:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.82A>G
  hgvsp: ENSP00000440491.1:p.Arg28Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.481A>G
  hgvsp: ENSP00000347606.3:p.Arg161Gly
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.518A>G
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg161Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

X-1409238-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409238
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409238
    reference: chr 0
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.482G>C
  hgvsp: ENSP00000354836.3:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.482G>C
  hgvsp: ENSP00000436825.1:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.482G>C
  hgvsp: ENSP00000370940.3:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.482G>C
  hgvsp: ENSP00000370920.3:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.482G>C
  hgvsp: ENSP00000347606.3:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.482G>C
  hgvsp: ENSP00000370935.3:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.482G>C
  hgvsp: ENSP00000370911.1:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.83G>C
  hgvsp: ENSP00000440491.1:p.Arg28Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.482G>C
  hgvsp: ENSP00000416437.2:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.482G>C
  hgvsp: ENSP00000348058.2:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.482G>C
  hgvsp: ENSP00000410667.1:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.482G>C
  hgvsp: ENSP00000397452.1:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.519G>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.482G>C
  hgvsp: ENSP00000394227.2:p.Arg161Thr
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3147G>C
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg161Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

X-1409241-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409241
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409241
    reference: chr 0
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.485A>C
  hgvsp: ENSP00000370940.3:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.86A>C
  hgvsp: ENSP00000440491.1:p.Glu29Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.485A>C
  hgvsp: ENSP00000370920.3:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.485A>C
  hgvsp: ENSP00000416437.2:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.485A>C
  hgvsp: ENSP00000410667.1:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.485A>C
  hgvsp: ENSP00000348058.2:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.485A>C
  hgvsp: ENSP00000370911.1:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3150A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.485A>C
  hgvsp: ENSP00000347606.3:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.485A>C
  hgvsp: ENSP00000370935.3:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.485A>C
  hgvsp: ENSP00000436825.1:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.522A>C
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.485A>C
  hgvsp: ENSP00000354836.3:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.485A>C
  hgvsp: ENSP00000397452.1:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.485A>C
  hgvsp: ENSP00000394227.2:p.Glu162Ala
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu162Ala
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

X-1409246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409246
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409246
    reference: chr 0
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.490C>T
  hgvsp: ENSP00000354836.3:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.490C>T
  hgvsp: ENSP00000416437.2:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.490C>T
  hgvsp: ENSP00000348058.2:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.490C>T
  hgvsp: ENSP00000370935.3:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.490C>T
  hgvsp: ENSP00000410667.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.490C>T
  hgvsp: ENSP00000436825.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.490C>T
  hgvsp: ENSP00000347606.3:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.490C>T
  hgvsp: ENSP00000370920.3:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.490C>T
  hgvsp: ENSP00000370940.3:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.490C>T
  hgvsp: ENSP00000370911.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.527C>T
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.91C>T
  hgvsp: ENSP00000440491.1:p.Arg31Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.490C>T
  hgvsp: ENSP00000397452.1:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.490C>T
  hgvsp: ENSP00000394227.2:p.Arg164Trp
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3155C>T
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg164Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

X-1409247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409247
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409247
    reference: chr 0
allele count: 572
allele frequency: 4.711308788402932e-3
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.491G>A
  hgvsp: ENSP00000370911.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.491G>A
  hgvsp: ENSP00000416437.2:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.491G>A
  hgvsp: ENSP00000347606.3:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.491G>A
  hgvsp: ENSP00000394227.2:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.491G>A
  hgvsp: ENSP00000397452.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.491G>A
  hgvsp: ENSP00000370920.3:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.491G>A
  hgvsp: ENSP00000370940.3:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.491G>A
  hgvsp: ENSP00000410667.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.491G>A
  hgvsp: ENSP00000436825.1:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.92G>A
  hgvsp: ENSP00000440491.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.491G>A
  hgvsp: ENSP00000348058.2:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.528G>A
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.491G>A
  hgvsp: ENSP00000370935.3:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.491G>A
  hgvsp: ENSP00000354836.3:p.Arg164Gln
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3156G>A
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 9.75e1
  variant carriers: 534
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg164Gln
num of homozygotes: 4
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

X-1409256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24001409256
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24001409256
    reference: chr 0
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000348058
  ensembl transcript: ENST00000355805
  gene symbol: CSF2RA
  hgvsc: ENST00000355805.2:c.500A>G
  hgvsp: ENSP00000348058.2:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000416437
  ensembl transcript: ENST00000432318
  gene symbol: CSF2RA
  hgvsc: ENST00000432318.2:c.500A>G
  hgvsp: ENSP00000416437.2:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000347606
  ensembl transcript: ENST00000355432
  gene symbol: CSF2RA
  hgvsc: ENST00000355432.3:c.500A>G
  hgvsp: ENSP00000347606.3:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370940
  ensembl transcript: ENST00000381529
  gene symbol: CSF2RA
  hgvsc: ENST00000381529.3:c.500A>G
  hgvsp: ENSP00000370940.3:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000440491
  ensembl transcript: ENST00000501036
  gene symbol: CSF2RA
  hgvsc: ENST00000501036.2:c.101A>G
  hgvsp: ENSP00000440491.1:p.Tyr34Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370920
  ensembl transcript: ENST00000381509
  gene symbol: CSF2RA
  hgvsc: ENST00000381509.3:c.500A>G
  hgvsp: ENSP00000370920.3:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000354836
  ensembl transcript: ENST00000361536
  gene symbol: CSF2RA
  hgvsc: ENST00000361536.3:c.500A>G
  hgvsp: ENSP00000354836.3:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000410667
  ensembl transcript: ENST00000412290
  gene symbol: CSF2RA
  hgvsc: ENST00000412290.1:c.500A>G
  hgvsp: ENSP00000410667.1:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000397452
  ensembl transcript: ENST00000419094
  gene symbol: CSF2RA
  hgvsc: ENST00000419094.1:c.500A>G
  hgvsp: ENSP00000397452.1:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370911
  ensembl transcript: ENST00000381500
  gene symbol: CSF2RA
  hgvsc: ENST00000381500.1:c.500A>G
  hgvsp: ENSP00000370911.1:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000436825
  ensembl transcript: ENST00000486791
  gene symbol: CSF2RA
  hgvsc: ENST00000486791.1:c.500A>G
  hgvsp: ENSP00000436825.1:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000476684
  ensembl transcript: ENST00000494969
  gene symbol: CSF2RA
  hgvsc: ENST00000494969.2:c.244+3165A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000370935
  ensembl transcript: ENST00000381524
  gene symbol: CSF2RA
  hgvsc: ENST00000381524.3:c.500A>G
  hgvsp: ENSP00000370935.3:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198223
  ensembl transcript: ENST00000493312
  gene symbol: CSF2RA
  hgvsc: ENST00000493312.1:n.537A>G
  variant of: http://identifiers.org/hgnc/2435
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198223
  ensembl protein: ENSP00000394227
  ensembl transcript: ENST00000417535
  gene symbol: CSF2RA
  hgvsc: ENST00000417535.2:c.500A>G
  hgvsp: ENSP00000394227.2:p.Tyr167Cys
  variant of: http://identifiers.org/hgnc/2435
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr167Cys
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 407
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2557
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1995
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1506
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2084
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1816
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 42043
bin: 9.75e1
variant carriers: 41

GenotypeDepth
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39592
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 1835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.364090734332949e-3
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.126615e6

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeDepth
all individuals: 42023
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 1817
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1178
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2085
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1054
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1510
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39583
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.182242183451373e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 7.1218e6

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.281e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.473e0

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

GenotypeDepth
all individuals: 472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1510
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1178
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 786
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1438
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2085
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1997
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39579
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 7.120847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

MQ
type: SiteQuality
SIO_000300: 5.99e1

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 5.896e0

GenotypeDepth
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1817
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1510
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2322
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1438
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1997
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1178
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 42019
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2085
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2559
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39579
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 5.89e-1

DP
type: SiteQuality
SIO_000300: 7.120538e6

QD
type: SiteQuality
SIO_000300: 1.638e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeDepth
all individuals: 2322
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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African
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East Asian
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South Asian
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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QD
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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Other
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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QD
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Other
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South Asian
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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South Asian
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East Asian
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VQSLOD
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FS
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MQRankSum
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QD
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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African
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Other
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 418

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66740
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African
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Latino
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European (Finnish)
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Other
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East Asian
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South Asian
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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European (Non-Finnish)
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QD
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VQSLOD
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BaseQRankSum
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 19
allele frequency: 1.150678294573644e-3
allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.37e0

VQSLOD
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FS
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SIO_000300: 5.698e0

MQRankSum
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SIO_000300: 5.75e-1

ReadPosRankSum
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SIO_000300: -3.89e-1

QD
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SIO_000300: 1.129e1

InbreedingCoeff
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SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
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SIO_000300: 7.078371e6

MQ
type: SiteQuality
SIO_000300: 5.999e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 5.450581395348837e-4
allele num: 16512
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.491759065028469e-5
allele num: 66740
num of homozygotes: 0

Other
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allele count: 1
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MQRankSum
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SIO_000300: 6.28e-1

DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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SIO_000300: 5.580000000000001e-1

BaseQRankSum
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SIO_000300: 2.67e0

VQSLOD
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ClippingRankSum
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SIO_000300: -1.27e0

MQ
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SIO_000300: 6.009e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10258
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.4e-3

QD
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SIO_000300: 1.302e1

ClippingRankSum
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SIO_000300: -1.044e0

DP
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SIO_000300: 7.076174e6

MQ
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SIO_000300: 5.993e1

FS
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SIO_000300: 2.821e0

VQSLOD
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SIO_000300: 1.48e0

ReadPosRankSum
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SIO_000300: 1.4e-1

BaseQRankSum
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SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6614
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East Asian
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European (Non-Finnish)
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allele num: 66740
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Other
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num of homozygotes: 0

South Asian
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BaseQRankSum
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DP
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

African
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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South Asian
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African
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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SIO_000300: -7.75e-1

DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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East Asian
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African
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allele num: 10238
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Latino
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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European (Finnish)
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Other
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MQRankSum
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.247e0

DP
type: SiteQuality
SIO_000300: 7.072593e6

QD
type: SiteQuality
SIO_000300: 1.098e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.553e0

ClippingRankSum
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SIO_000300: 7.21e-1

ReadPosRankSum
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SIO_000300: -6.0e-2

MQ
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SIO_000300: 5.905e1

BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

DP
type: SiteQuality
SIO_000300: 7.071815e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 15
allele frequency: 9.084302325581395e-4
allele num: 16512
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 7.071597e6

BaseQRankSum
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SIO_000300: -2.056e0

FS
type: SiteQuality
SIO_000300: 4.832e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

VQSLOD
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SIO_000300: -1.235e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.270000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39444
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.2e-3

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.531e0

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -2.891e0

DP
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SIO_000300: 7.070195e6

MQ
type: SiteQuality
SIO_000300: 5.736e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.02e-1

InbreedingCoeff
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SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.085e0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43
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variant carriers: 0

South Asian
type: Population
allele count: 71
allele frequency: 5.665496329396744e-3
allele num: 12532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.247e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.22e-2

FS
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 6.960334e6

ReadPosRankSum
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SIO_000300: 2.45e-1

BaseQRankSum
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SIO_000300: -3.721e0

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeDepth
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variant carriers: 323

GenotypeDepth
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variant carriers: 40

GenotypeDepth
all individuals: 82
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variant carriers: 26

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 158
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 46296

GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 4

European (Finnish)
type: Population
allele count: 3556
allele frequency: 5.378100423472474e-1
allele num: 6612
num of homozygotes: 962

European (Non-Finnish)
type: Population
allele count: 37873
allele frequency: 5.675898450379162e-1
allele num: 66726
num of homozygotes: 10801

East Asian
type: Population
allele count: 4809
allele frequency: 5.562109646079112e-1
allele num: 8646
num of homozygotes: 1322

South Asian
type: Population
allele count: 8115
allele frequency: 4.915798400775382e-1
allele num: 16508
num of homozygotes: 1993

Latino
type: Population
allele count: 7820
allele frequency: 6.756523241748748e-1
allele num: 11574
num of homozygotes: 2657

Other
type: Population
allele count: 492
allele frequency: 5.43046357615894e-1
allele num: 906
num of homozygotes: 133

African
type: Population
allele count: 1835
allele frequency: 1.825507361719061e-1
allele num: 10052
num of homozygotes: 172

BaseQRankSum
type: SiteQuality
SIO_000300: -4.503e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.82e-2

MQ
type: SiteQuality
SIO_000300: 6.02e1

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 6.888646e6

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

QD
type: SiteQuality
SIO_000300: 2.785e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 3740
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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African
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Latino
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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DP
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FS
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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Other
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European (Non-Finnish)
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African
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ReadPosRankSum
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MQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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East Asian
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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DP
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MQ
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VQSLOD
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MQRankSum
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GenotypeDepth
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -6.36e-1

ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQ
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SIO_000300: 5.866e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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SIO_000300: 1.7e-3

ClippingRankSum
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DP
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SIO_000300: 4.745228e6

MQ
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BaseQRankSum
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MQRankSum
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FS
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 2.87e0

MQRankSum
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SIO_000300: -5.09e-1

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
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SIO_000300: 7.15e0

ReadPosRankSum
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SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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European (Finnish)
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East Asian
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allele count: 26
allele frequency: 3.005780346820809e-3
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
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VQSLOD
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MQRankSum
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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African
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European (Finnish)
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Other
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East Asian
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Latino
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South Asian
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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South Asian
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Latino
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Other
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East Asian
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European (Non-Finnish)
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 14
allele frequency: 2.098698806739821e-4
allele num: 66708
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -1.96e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-3

MQ
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SIO_000300: 6.003e1

MQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 3.0e-3

MQ
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SIO_000300: 5.994e1

BaseQRankSum
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SIO_000300: -2.017e0

MQRankSum
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SIO_000300: 4.8e-2

ClippingRankSum
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SIO_000300: -9.379999999999999e-1

VQSLOD
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SIO_000300: -3.469e0

QD
type: SiteQuality
SIO_000300: 3.08e1

DP
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SIO_000300: 4.73853e6

FS
type: SiteQuality
SIO_000300: 2.565e0

ReadPosRankSum
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SIO_000300: -8.54e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -4.0e-1

DP
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.959e1

ReadPosRankSum
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SIO_000300: -1.55e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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BaseQRankSum
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SIO_000300: 7.48e-1

QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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African
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Finnish)
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Other
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DP
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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Other
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East Asian
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European (Finnish)
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FS
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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African
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DP
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MQRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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East Asian
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African
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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East Asian
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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FS
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DP
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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East Asian
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African
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Latino
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European (Non-Finnish)
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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MQ
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African
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
all individuals: 4675
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3944
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51250
bin: 9.75e1
variant carriers: 568

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 31
allele frequency: 2.677491794783209e-3
allele num: 11578
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 24
allele frequency: 3.628666465074085e-3
allele num: 6614
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 471
allele frequency: 7.057448530072822e-3
allele num: 66738
num of homozygotes: 1

African
type: Population
allele count: 22
allele frequency: 2.114164904862579e-3
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.271802325581395e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 3.803062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

FS
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeDepth
all individuals: 4234
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4687
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3369
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1471
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5740
bin: 5.25e1
variant carriers: 0