X-151092653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092653
    reference: chr 0
allele count: 45279
allele frequency: 5.189570200573066e-1
allele num: 87250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.517G>A
  hgvsp: ENSP00000359360.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.517G>A
  hgvsp: ENSP00000377498.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.517G>A
  hgvsp: ENSP00000377497.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.517G>A
  hgvsp: ENSP00000359362.4:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.517G>A
  hgvsp: ENSP00000390096.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.517G>A
  hgvsp: ENSP00000276344.2:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.517G>A
  hgvsp: ENSP00000402186.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.517G>A
  hgvsp: ENSP00000394149.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.517G>A
  hgvsp: ENSP00000391904.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.517G>A
  hgvsp: ENSP00000353379.2:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.517G>A
  hgvsp: ENSP00000359365.3:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.517G>A
  hgvsp: ENSP00000394073.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.517G>A
  hgvsp: ENSP00000402624.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.517G>A
  hgvsp: ENSP00000400900.1:p.Ala173Thr
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10830
  bin: 2.25e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 534
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 6.75e1
  variant carriers: 635
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.25e1
  variant carriers: 723
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 8.25e1
  variant carriers: 1046
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 376
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.25e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 411
genotype quality: GenotypeQuality
hgvs: p.Ala173Thr
num of homozygotes: 7458
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-151092656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092656
    reference: chr 0
allele count: 1
allele frequency: 1.149174318252336e-5
allele num: 87019
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.520A>G
  hgvsp: ENSP00000402186.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.520A>G
  hgvsp: ENSP00000394149.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.520A>G
  hgvsp: ENSP00000402624.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.520A>G
  hgvsp: ENSP00000377497.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.520A>G
  hgvsp: ENSP00000359360.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.520A>G
  hgvsp: ENSP00000377498.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.520A>G
  hgvsp: ENSP00000391904.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.520A>G
  hgvsp: ENSP00000353379.2:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.520A>G
  hgvsp: ENSP00000390096.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.520A>G
  hgvsp: ENSP00000359362.4:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.520A>G
  hgvsp: ENSP00000276344.2:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.520A>G
  hgvsp: ENSP00000394073.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.520A>G
  hgvsp: ENSP00000400900.1:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.520A>G
  hgvsp: ENSP00000359365.3:p.Ser174Gly
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser174Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

X-151092665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092665
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092665
    reference: chr 0
allele count: 1
allele frequency: 1.151463510121364e-5
allele num: 86846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.529T>C
  hgvsp: ENSP00000377498.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.529T>C
  hgvsp: ENSP00000353379.2:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.529T>C
  hgvsp: ENSP00000359362.4:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.529T>C
  hgvsp: ENSP00000400900.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.529T>C
  hgvsp: ENSP00000377497.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.529T>C
  hgvsp: ENSP00000394073.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.529T>C
  hgvsp: ENSP00000359360.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.529T>C
  hgvsp: ENSP00000359365.3:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.529T>C
  hgvsp: ENSP00000402624.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.529T>C
  hgvsp: ENSP00000402186.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.529T>C
  hgvsp: ENSP00000390096.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.529T>C
  hgvsp: ENSP00000391904.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.529T>C
  hgvsp: ENSP00000394149.1:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.529T>C
  hgvsp: ENSP00000276344.2:p.Tyr177His
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr177His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

X-151092669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092669
    reference: chr 0
allele count: 269
allele frequency: 3.100399940066618e-3
allele num: 86763
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.533C>T
  hgvsp: ENSP00000359365.3:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.533C>T
  hgvsp: ENSP00000402624.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.533C>T
  hgvsp: ENSP00000377497.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.533C>T
  hgvsp: ENSP00000377498.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.533C>T
  hgvsp: ENSP00000276344.2:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.533C>T
  hgvsp: ENSP00000359360.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.533C>T
  hgvsp: ENSP00000391904.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.533C>T
  hgvsp: ENSP00000390096.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.533C>T
  hgvsp: ENSP00000353379.2:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.533C>T
  hgvsp: ENSP00000400900.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.533C>T
  hgvsp: ENSP00000359362.4:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.533C>T
  hgvsp: ENSP00000402186.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.533C>T
  hgvsp: ENSP00000394073.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.533C>T
  hgvsp: ENSP00000394149.1:p.Thr178Ile
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13624
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr178Ile
num of homozygotes: 8
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

X-151092676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092676
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092676
    reference: chr 0
allele count: 2
allele frequency: 2.309042209291586e-5
allele num: 86616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.540C>T
  hgvsp: ENST00000370340.3:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.540C>T
  hgvsp: ENST00000457310.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.540C>T
  hgvsp: ENST00000370337.4:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.540C>T
  hgvsp: ENST00000431971.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.540C>T
  hgvsp: ENST00000425182.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.540C>T
  hgvsp: ENST00000360243.2:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.540C>T
  hgvsp: ENST00000393921.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.540C>T
  hgvsp: ENST00000276344.2:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.540C>T
  hgvsp: ENST00000448295.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.540C>T
  hgvsp: ENST00000370335.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.540C>T
  hgvsp: ENST00000430273.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.540C>T
  hgvsp: ENST00000416020.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.540C>T
  hgvsp: ENST00000441865.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.540C>T
  hgvsp: ENST00000393920.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val180Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-151092678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092678
    reference: chr 0
allele count: 3
allele frequency: 3.467206009823751e-5
allele num: 86525
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.542C>T
  hgvsp: ENSP00000400900.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.542C>T
  hgvsp: ENSP00000359360.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.542C>T
  hgvsp: ENSP00000276344.2:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.542C>T
  hgvsp: ENSP00000402624.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.542C>T
  hgvsp: ENSP00000390096.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.542C>T
  hgvsp: ENSP00000377497.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.542C>T
  hgvsp: ENSP00000394073.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.542C>T
  hgvsp: ENSP00000402186.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.542C>T
  hgvsp: ENSP00000391904.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.542C>T
  hgvsp: ENSP00000359362.4:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.542C>T
  hgvsp: ENSP00000359365.3:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.542C>T
  hgvsp: ENSP00000353379.2:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.542C>T
  hgvsp: ENSP00000394149.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.542C>T
  hgvsp: ENSP00000377498.1:p.Thr181Ile
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr181Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

X-151092679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092679
    reference: chr 0
allele count: 1
allele frequency: 1.155815485615876e-5
allele num: 86519
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.543C>T
  hgvsp: ENST00000425182.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.543C>T
  hgvsp: ENST00000441865.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.543C>T
  hgvsp: ENST00000276344.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.543C>T
  hgvsp: ENST00000457310.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.543C>T
  hgvsp: ENST00000448295.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.543C>T
  hgvsp: ENST00000360243.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.543C>T
  hgvsp: ENST00000370337.4:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.543C>T
  hgvsp: ENST00000431971.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.543C>T
  hgvsp: ENST00000393921.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.543C>T
  hgvsp: ENST00000393920.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.543C>T
  hgvsp: ENST00000370340.3:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.543C>T
  hgvsp: ENST00000370335.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.543C>T
  hgvsp: ENST00000430273.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.543C>T
  hgvsp: ENST00000416020.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr181Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-151092682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092682
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092682
    reference: chr 0
allele count: 1
allele frequency: 1.156336725254394e-5
allele num: 86480
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.546C>T
  hgvsp: ENST00000360243.2:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.546C>T
  hgvsp: ENST00000425182.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.546C>T
  hgvsp: ENST00000393921.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.546C>T
  hgvsp: ENST00000430273.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.546C>T
  hgvsp: ENST00000457310.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.546C>T
  hgvsp: ENST00000448295.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.546C>T
  hgvsp: ENST00000276344.2:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.546C>T
  hgvsp: ENST00000431971.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.546C>T
  hgvsp: ENST00000370340.3:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.546C>T
  hgvsp: ENST00000370335.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.546C>T
  hgvsp: ENST00000416020.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.546C>T
  hgvsp: ENST00000393920.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.546C>T
  hgvsp: ENST00000441865.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.546C>T
  hgvsp: ENST00000370337.4:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys182Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-151092696-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
allele count: 1
allele frequency: 1.158842548062995e-5
allele num: 86293
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.560A>C
  hgvsp: ENSP00000394073.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.560A>C
  hgvsp: ENSP00000402186.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.560A>C
  hgvsp: ENSP00000359365.3:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.560A>C
  hgvsp: ENSP00000394149.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.560A>C
  hgvsp: ENSP00000400900.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.560A>C
  hgvsp: ENSP00000390096.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.560A>C
  hgvsp: ENSP00000276344.2:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.560A>C
  hgvsp: ENSP00000391904.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.560A>C
  hgvsp: ENSP00000377498.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.560A>C
  hgvsp: ENSP00000353379.2:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.560A>C
  hgvsp: ENSP00000359360.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.560A>C
  hgvsp: ENSP00000359362.4:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.560A>C
  hgvsp: ENSP00000377497.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.560A>C
  hgvsp: ENSP00000402624.1:p.Tyr187Ser
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr187Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

X-151092696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
allele count: 9
allele frequency: 1.042958293256695e-4
allele num: 86293
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.560A>G
  hgvsp: ENSP00000359362.4:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.560A>G
  hgvsp: ENSP00000276344.2:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.560A>G
  hgvsp: ENSP00000377497.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.560A>G
  hgvsp: ENSP00000391904.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.560A>G
  hgvsp: ENSP00000359365.3:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.560A>G
  hgvsp: ENSP00000359360.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.560A>G
  hgvsp: ENSP00000402186.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.560A>G
  hgvsp: ENSP00000353379.2:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.560A>G
  hgvsp: ENSP00000400900.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.560A>G
  hgvsp: ENSP00000390096.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.560A>G
  hgvsp: ENSP00000394073.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.560A>G
  hgvsp: ENSP00000377498.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.560A>G
  hgvsp: ENSP00000394149.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.560A>G
  hgvsp: ENSP00000402624.1:p.Tyr187Cys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr187Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

X-151092696-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092696
    reference: chr 0
allele count: 1
allele frequency: 1.158842548062995e-5
allele num: 86293
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.560A>T
  hgvsp: ENSP00000359365.3:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.560A>T
  hgvsp: ENSP00000377497.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.560A>T
  hgvsp: ENSP00000402186.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.560A>T
  hgvsp: ENSP00000359362.4:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.560A>T
  hgvsp: ENSP00000359360.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.560A>T
  hgvsp: ENSP00000390096.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.560A>T
  hgvsp: ENSP00000391904.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.560A>T
  hgvsp: ENSP00000394073.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.560A>T
  hgvsp: ENSP00000377498.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.560A>T
  hgvsp: ENSP00000402624.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.560A>T
  hgvsp: ENSP00000276344.2:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.560A>T
  hgvsp: ENSP00000353379.2:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.560A>T
  hgvsp: ENSP00000400900.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.560A>T
  hgvsp: ENSP00000394149.1:p.Tyr187Phe
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr187Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-151092703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092703
    reference: chr 0
allele count: 1
allele frequency: 1.160698740641866e-5
allele num: 86155
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.567C>T
  hgvsp: ENST00000430273.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.567C>T
  hgvsp: ENST00000457310.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.567C>T
  hgvsp: ENST00000425182.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.567C>T
  hgvsp: ENST00000431971.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.567C>T
  hgvsp: ENST00000370340.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.567C>T
  hgvsp: ENST00000360243.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.567C>T
  hgvsp: ENST00000276344.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.567C>T
  hgvsp: ENST00000370335.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.567C>T
  hgvsp: ENST00000448295.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.567C>T
  hgvsp: ENST00000393921.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.567C>T
  hgvsp: ENST00000393920.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.567C>T
  hgvsp: ENST00000441865.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.567C>T
  hgvsp: ENST00000370337.4:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.567C>T
  hgvsp: ENST00000416020.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly189Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-151092707-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092707
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092707
    reference: chr 0
allele count: 17
allele frequency: 1.974127319599601e-4
allele num: 86114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.571C>G
  hgvsp: ENSP00000402624.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.571C>G
  hgvsp: ENSP00000359362.4:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.571C>G
  hgvsp: ENSP00000359360.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.571C>G
  hgvsp: ENSP00000276344.2:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.571C>G
  hgvsp: ENSP00000353379.2:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.571C>G
  hgvsp: ENSP00000390096.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.571C>G
  hgvsp: ENSP00000400900.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.571C>G
  hgvsp: ENSP00000359365.3:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.571C>G
  hgvsp: ENSP00000402186.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.571C>G
  hgvsp: ENSP00000391904.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.571C>G
  hgvsp: ENSP00000377497.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.571C>G
  hgvsp: ENSP00000394073.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.571C>G
  hgvsp: ENSP00000377498.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.571C>G
  hgvsp: ENSP00000394149.1:p.Leu191Val
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu191Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

X-151092709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092709
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092709
    reference: chr 0
allele count: 4
allele frequency: 4.645922622158728e-5
allele num: 86097
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.573G>A
  hgvsp: ENST00000360243.2:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.573G>A
  hgvsp: ENST00000370340.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.573G>A
  hgvsp: ENST00000416020.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.573G>A
  hgvsp: ENST00000393921.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.573G>A
  hgvsp: ENST00000393920.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.573G>A
  hgvsp: ENST00000425182.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.573G>A
  hgvsp: ENST00000431971.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.573G>A
  hgvsp: ENST00000370335.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.573G>A
  hgvsp: ENST00000276344.2:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.573G>A
  hgvsp: ENST00000457310.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.573G>A
  hgvsp: ENST00000430273.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.573G>A
  hgvsp: ENST00000370337.4:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.573G>A
  hgvsp: ENST00000448295.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.573G>A
  hgvsp: ENST00000441865.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu191Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-151092711-GTAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092708
    reference: chr 0
allele count: 1
allele frequency: 1.161777519604996e-5
allele num: 86075
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.580_582delAAT
  hgvsp: ENSP00000394149.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.580_582delAAT
  hgvsp: ENSP00000390096.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.580_582delAAT
  hgvsp: ENSP00000377497.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.580_582delAAT
  hgvsp: ENSP00000400900.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.580_582delAAT
  hgvsp: ENSP00000276344.2:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.580_582delAAT
  hgvsp: ENSP00000359360.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.580_582delAAT
  hgvsp: ENSP00000377498.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.580_582delAAT
  hgvsp: ENSP00000394073.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.580_582delAAT
  hgvsp: ENSP00000391904.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.580_582delAAT
  hgvsp: ENSP00000402186.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.580_582delAAT
  hgvsp: ENSP00000359365.3:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.580_582delAAT
  hgvsp: ENSP00000353379.2:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.580_582delAAT
  hgvsp: ENSP00000402624.1:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.580_582delAAT
  hgvsp: ENSP00000359362.4:p.Asn194del
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn194del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: GTAA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

X-151092724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092724
    reference: chr 0
allele count: 1
allele frequency: 1.163643133923688e-5
allele num: 85937
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.588C>T
  hgvsp: ENST00000370340.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.588C>T
  hgvsp: ENST00000370337.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.588C>T
  hgvsp: ENST00000276344.2:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.588C>T
  hgvsp: ENST00000393921.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.588C>T
  hgvsp: ENST00000457310.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.588C>T
  hgvsp: ENST00000416020.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.588C>T
  hgvsp: ENST00000360243.2:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.588C>T
  hgvsp: ENST00000448295.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.588C>T
  hgvsp: ENST00000431971.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.588C>T
  hgvsp: ENST00000425182.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.588C>T
  hgvsp: ENST00000430273.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.588C>T
  hgvsp: ENST00000393920.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.588C>T
  hgvsp: ENST00000370335.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.588C>T
  hgvsp: ENST00000441865.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile196Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

X-151092736-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092736
    reference: chr 0
allele count: 1326
allele frequency: 1.543727298127969e-2
allele num: 85896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.600A>G
  hgvsp: ENST00000457310.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.600A>G
  hgvsp: ENST00000416020.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.600A>G
  hgvsp: ENST00000431971.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.600A>G
  hgvsp: ENST00000276344.2:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.600A>G
  hgvsp: ENST00000370340.3:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.600A>G
  hgvsp: ENST00000425182.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.600A>G
  hgvsp: ENST00000370337.4:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.600A>G
  hgvsp: ENST00000448295.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.600A>G
  hgvsp: ENST00000393921.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.600A>G
  hgvsp: ENST00000370335.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.600A>G
  hgvsp: ENST00000360243.2:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.600A>G
  hgvsp: ENST00000441865.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.600A>G
  hgvsp: ENST00000393920.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.600A>G
  hgvsp: ENST00000430273.1:c.600A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 13085
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
hgvs: p.Thr200Thr
num of homozygotes: 75
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-151092749-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092749
    reference: chr 0
allele count: 1
allele frequency: 1.16319646388275e-5
allele num: 85970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.613A>G
  hgvsp: ENSP00000359360.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.613A>G
  hgvsp: ENSP00000353379.2:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.613A>G
  hgvsp: ENSP00000359365.3:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.613A>G
  hgvsp: ENSP00000391904.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.613A>G
  hgvsp: ENSP00000394073.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.613A>G
  hgvsp: ENSP00000390096.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.613A>G
  hgvsp: ENSP00000402186.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.613A>G
  hgvsp: ENSP00000276344.2:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.613A>G
  hgvsp: ENSP00000402624.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.613A>G
  hgvsp: ENSP00000400900.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.613A>G
  hgvsp: ENSP00000377497.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.613A>G
  hgvsp: ENSP00000377498.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.613A>G
  hgvsp: ENSP00000359362.4:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.613A>G
  hgvsp: ENSP00000394149.1:p.Ile205Val
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile205Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

X-151092751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092751
    reference: chr 0
allele count: 4
allele frequency: 4.654789196234276e-5
allele num: 85933
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.615C>T
  hgvsp: ENST00000425182.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.615C>T
  hgvsp: ENST00000393921.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.615C>T
  hgvsp: ENST00000393920.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.615C>T
  hgvsp: ENST00000370335.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.615C>T
  hgvsp: ENST00000430273.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.615C>T
  hgvsp: ENST00000441865.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.615C>T
  hgvsp: ENST00000457310.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.615C>T
  hgvsp: ENST00000370340.3:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.615C>T
  hgvsp: ENST00000431971.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.615C>T
  hgvsp: ENST00000360243.2:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.615C>T
  hgvsp: ENST00000276344.2:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.615C>T
  hgvsp: ENST00000370337.4:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.615C>T
  hgvsp: ENST00000448295.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.615C>T
  hgvsp: ENST00000416020.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile205Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

X-151092754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092754
    reference: chr 0
allele count: 2
allele frequency: 2.326419988600542e-5
allele num: 85969
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.618C>T
  hgvsp: ENST00000441865.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.618C>T
  hgvsp: ENST00000457310.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.618C>T
  hgvsp: ENST00000370337.4:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.618C>T
  hgvsp: ENST00000393920.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.618C>T
  hgvsp: ENST00000431971.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.618C>T
  hgvsp: ENST00000360243.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.618C>T
  hgvsp: ENST00000276344.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.618C>T
  hgvsp: ENST00000448295.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.618C>T
  hgvsp: ENST00000430273.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.618C>T
  hgvsp: ENST00000370340.3:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.618C>T
  hgvsp: ENST00000393921.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.618C>T
  hgvsp: ENST00000425182.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.618C>T
  hgvsp: ENST00000370335.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.618C>T
  hgvsp: ENST00000416020.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val206Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-151092761-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092761
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092761
    reference: chr 0
allele count: 1
allele frequency: 1.162358192300539e-5
allele num: 86032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.625A>T
  hgvsp: ENSP00000359362.4:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.625A>T
  hgvsp: ENSP00000400900.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.625A>T
  hgvsp: ENSP00000390096.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.625A>T
  hgvsp: ENSP00000394149.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.625A>T
  hgvsp: ENSP00000359365.3:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.625A>T
  hgvsp: ENSP00000377497.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.625A>T
  hgvsp: ENSP00000391904.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.625A>T
  hgvsp: ENSP00000402624.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.625A>T
  hgvsp: ENSP00000377498.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.625A>T
  hgvsp: ENSP00000402186.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.625A>T
  hgvsp: ENSP00000353379.2:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.625A>T
  hgvsp: ENSP00000276344.2:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.625A>T
  hgvsp: ENSP00000359360.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.625A>T
  hgvsp: ENSP00000394073.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr209Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS

X-151092778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092778
    reference: chr 0
allele count: 2
allele frequency: 2.323096222645542e-5
allele num: 86092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.642C>T
  hgvsp: ENST00000425182.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.642C>T
  hgvsp: ENST00000457310.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.642C>T
  hgvsp: ENST00000276344.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.642C>T
  hgvsp: ENST00000393921.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.642C>T
  hgvsp: ENST00000448295.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.642C>T
  hgvsp: ENST00000370340.3:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.642C>T
  hgvsp: ENST00000370335.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.642C>T
  hgvsp: ENST00000430273.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.642C>T
  hgvsp: ENST00000431971.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.642C>T
  hgvsp: ENST00000370337.4:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.642C>T
  hgvsp: ENST00000416020.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.642C>T
  hgvsp: ENST00000441865.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.642C>T
  hgvsp: ENST00000360243.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.642C>T
  hgvsp: ENST00000393920.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly214Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

X-151092784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092784
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092784
    reference: chr 0
allele count: 2306
allele frequency: 2.675825897260354e-2
allele num: 86179
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.648C>T
  hgvsp: ENST00000393921.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.648C>T
  hgvsp: ENST00000430273.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.648C>T
  hgvsp: ENST00000425182.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.648C>T
  hgvsp: ENST00000370335.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.648C>T
  hgvsp: ENST00000393920.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.648C>T
  hgvsp: ENST00000448295.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.648C>T
  hgvsp: ENST00000441865.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.648C>T
  hgvsp: ENST00000276344.2:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.648C>T
  hgvsp: ENST00000370337.4:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.648C>T
  hgvsp: ENST00000457310.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.648C>T
  hgvsp: ENST00000416020.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.648C>T
  hgvsp: ENST00000431971.1:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.648C>T
  hgvsp: ENST00000360243.2:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.648C>T
  hgvsp: ENST00000370340.3:c.648C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8356
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
hgvs: p.Ser216Ser
num of homozygotes: 27
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-151092785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092785
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092785
    reference: chr 0
allele count: 10
allele frequency: 1.16033510477826e-4
allele num: 86182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.649G>A
  hgvsp: ENSP00000377497.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000391904
  ensembl transcript: ENST00000448295
  gene symbol: MAGEA4
  hgvsc: ENST00000448295.1:c.649G>A
  hgvsp: ENSP00000391904.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000400900
  ensembl transcript: ENST00000425182
  gene symbol: MAGEA4
  hgvsc: ENST00000425182.1:c.649G>A
  hgvsp: ENSP00000400900.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.649G>A
  hgvsp: ENSP00000359360.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.649G>A
  hgvsp: ENSP00000353379.2:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.649G>A
  hgvsp: ENSP00000359365.3:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.649G>A
  hgvsp: ENSP00000402624.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.649G>A
  hgvsp: ENSP00000276344.2:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.649G>A
  hgvsp: ENSP00000377498.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.649G>A
  hgvsp: ENSP00000394073.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.649G>A
  hgvsp: ENSP00000402186.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.649G>A
  hgvsp: ENSP00000390096.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.649G>A
  hgvsp: ENSP00000394149.1:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.649G>A
  hgvsp: ENSP00000359362.4:p.Ala217Thr
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala217Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

X-151092802-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092802
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092802
    reference: chr 0
allele count: 1
allele frequency: 1.16096824751843e-5
allele num: 86135
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.666C>A
  hgvsp: ENST00000370337.4:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.666C>A
  hgvsp: ENST00000457310.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.666C>A
  hgvsp: ENST00000393921.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.666C>A
  hgvsp: ENST00000370335.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.666C>A
  hgvsp: ENST00000441865.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.666C>A
  hgvsp: ENST00000370340.3:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.666C>A
  hgvsp: ENST00000430273.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.666C>A
  hgvsp: ENST00000393920.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.666C>A
  hgvsp: ENST00000431971.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.666C>A
  hgvsp: ENST00000416020.1:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.666C>A
  hgvsp: ENST00000276344.2:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.666C>A
  hgvsp: ENST00000360243.2:c.666C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile222Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-151092809-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092809
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092809
    reference: chr 0
allele count: 1
allele frequency: 1.160644854281039e-5
allele num: 86159
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.673G>C
  hgvsp: ENSP00000359360.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.673G>C
  hgvsp: ENSP00000402624.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.673G>C
  hgvsp: ENSP00000359362.4:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.673G>C
  hgvsp: ENSP00000394149.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.673G>C
  hgvsp: ENSP00000276344.2:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.673G>C
  hgvsp: ENSP00000402186.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.673G>C
  hgvsp: ENSP00000359365.3:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.673G>C
  hgvsp: ENSP00000390096.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.673G>C
  hgvsp: ENSP00000377497.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.673G>C
  hgvsp: ENSP00000353379.2:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.673G>C
  hgvsp: ENSP00000377498.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.673G>C
  hgvsp: ENSP00000394073.1:p.Glu225Gln
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu225Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

X-151092815-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092815
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092815
    reference: chr 0
allele count: 1
allele frequency: 1.161197426786502e-5
allele num: 86118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.679G>T
  hgvsp: ENSP00000276344.2:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.679G>T
  hgvsp: ENSP00000394149.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.679G>T
  hgvsp: ENSP00000353379.2:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.679G>T
  hgvsp: ENSP00000377498.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.679G>T
  hgvsp: ENSP00000377497.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.679G>T
  hgvsp: ENSP00000394073.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.679G>T
  hgvsp: ENSP00000402186.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.679G>T
  hgvsp: ENSP00000390096.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.679G>T
  hgvsp: ENSP00000359360.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.679G>T
  hgvsp: ENSP00000359365.3:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.679G>T
  hgvsp: ENSP00000402624.1:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.679G>T
  hgvsp: ENSP00000359362.4:p.Gly227Cys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly227Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

X-151092818-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092818
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092818
    reference: chr 0
allele count: 2
allele frequency: 2.322367886296868e-5
allele num: 86119
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.682G>A
  hgvsp: ENSP00000377498.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.682G>A
  hgvsp: ENSP00000402186.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.682G>A
  hgvsp: ENSP00000359360.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.682G>A
  hgvsp: ENSP00000394073.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.682G>A
  hgvsp: ENSP00000390096.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.682G>A
  hgvsp: ENSP00000353379.2:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.682G>A
  hgvsp: ENSP00000377497.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.682G>A
  hgvsp: ENSP00000359362.4:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.682G>A
  hgvsp: ENSP00000402624.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.682G>A
  hgvsp: ENSP00000359365.3:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.682G>A
  hgvsp: ENSP00000276344.2:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.682G>A
  hgvsp: ENSP00000394149.1:p.Val228Met
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val228Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-151092824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092824
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092824
    reference: chr 0
allele count: 2
allele frequency: 2.322961311079364e-5
allele num: 86097
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.688G>A
  hgvsp: ENSP00000377497.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.688G>A
  hgvsp: ENSP00000394073.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.688G>A
  hgvsp: ENSP00000359362.4:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.688G>A
  hgvsp: ENSP00000359360.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.688G>A
  hgvsp: ENSP00000390096.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.688G>A
  hgvsp: ENSP00000359365.3:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.688G>A
  hgvsp: ENSP00000402186.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.688G>A
  hgvsp: ENSP00000394149.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.688G>A
  hgvsp: ENSP00000377498.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.688G>A
  hgvsp: ENSP00000276344.2:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.688G>A
  hgvsp: ENSP00000402624.1:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.688G>A
  hgvsp: ENSP00000353379.2:p.Gly230Arg
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly230Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-151092825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092825
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092825
    reference: chr 0
allele count: 2
allele frequency: 2.322583642043409e-5
allele num: 86111
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.689G>A
  hgvsp: ENSP00000394149.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.689G>A
  hgvsp: ENSP00000390096.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.689G>A
  hgvsp: ENSP00000359362.4:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.689G>A
  hgvsp: ENSP00000402186.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.689G>A
  hgvsp: ENSP00000359360.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.689G>A
  hgvsp: ENSP00000276344.2:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.689G>A
  hgvsp: ENSP00000359365.3:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.689G>A
  hgvsp: ENSP00000394073.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.689G>A
  hgvsp: ENSP00000402624.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.689G>A
  hgvsp: ENSP00000377497.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.689G>A
  hgvsp: ENSP00000353379.2:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.689G>A
  hgvsp: ENSP00000377498.1:p.Gly230Glu
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly230Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-151092826-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092826
    reference: chr 0
allele count: 28
allele frequency: 3.252939262976904e-4
allele num: 86076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.690G>C
  hgvsp: ENST00000416020.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.690G>C
  hgvsp: ENST00000393921.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.690G>C
  hgvsp: ENST00000441865.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.690G>C
  hgvsp: ENST00000431971.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.690G>C
  hgvsp: ENST00000370340.3:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.690G>C
  hgvsp: ENST00000360243.2:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.690G>C
  hgvsp: ENST00000370335.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.690G>C
  hgvsp: ENST00000276344.2:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.690G>C
  hgvsp: ENST00000457310.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.690G>C
  hgvsp: ENST00000430273.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.690G>C
  hgvsp: ENST00000370337.4:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.690G>C
  hgvsp: ENST00000393920.1:c.690G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly230Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

X-151092826-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092826
    reference: chr 0
allele count: 1
allele frequency: 1.161764022491752e-5
allele num: 86076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.690G>T
  hgvsp: ENST00000370335.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.690G>T
  hgvsp: ENST00000276344.2:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.690G>T
  hgvsp: ENST00000370340.3:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.690G>T
  hgvsp: ENST00000441865.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.690G>T
  hgvsp: ENST00000393921.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.690G>T
  hgvsp: ENST00000431971.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.690G>T
  hgvsp: ENST00000370337.4:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.690G>T
  hgvsp: ENST00000360243.2:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.690G>T
  hgvsp: ENST00000393920.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.690G>T
  hgvsp: ENST00000416020.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.690G>T
  hgvsp: ENST00000457310.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.690G>T
  hgvsp: ENST00000430273.1:c.690G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly230Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-151092827-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092827
    reference: chr 0
allele count: 75
allele frequency: 8.712319219376198e-4
allele num: 86085
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.691G>C
  hgvsp: ENSP00000377498.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.691G>C
  hgvsp: ENSP00000359362.4:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.691G>C
  hgvsp: ENSP00000359365.3:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.691G>C
  hgvsp: ENSP00000353379.2:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.691G>C
  hgvsp: ENSP00000359360.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.691G>C
  hgvsp: ENSP00000402186.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.691G>C
  hgvsp: ENSP00000394149.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.691G>C
  hgvsp: ENSP00000390096.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.691G>C
  hgvsp: ENSP00000276344.2:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.691G>C
  hgvsp: ENSP00000377497.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.691G>C
  hgvsp: ENSP00000402624.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.691G>C
  hgvsp: ENST00000416020.1:c.691G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Val231Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

X-151092827-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092827
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092827
    reference: chr 0
allele count: 28
allele frequency: 3.252599175233781e-4
allele num: 86085
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.691G>T
  hgvsp: ENSP00000359365.3:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.691G>T
  hgvsp: ENSP00000353379.2:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.691G>T
  hgvsp: ENSP00000402186.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.691G>T
  hgvsp: ENSP00000390096.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.691G>T
  hgvsp: ENSP00000377498.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.691G>T
  hgvsp: ENSP00000276344.2:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.691G>T
  hgvsp: ENSP00000359360.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.691G>T
  hgvsp: ENSP00000359362.4:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.691G>T
  hgvsp: ENSP00000402624.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.691G>T
  hgvsp: ENSP00000394149.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.691G>T
  hgvsp: ENSP00000377497.1:p.Val231Leu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394073
  ensembl transcript: ENST00000416020
  gene symbol: MAGEA4
  hgvsc: ENST00000416020.1:c.691G>T
  hgvsp: ENST00000416020.1:c.691G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val231Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

X-151092829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092829
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092829
    reference: chr 0
allele count: 1
allele frequency: 1.16198001394376e-5
allele num: 86060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.693G>A
  hgvsp: ENST00000393921.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.693G>A
  hgvsp: ENST00000457310.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.693G>A
  hgvsp: ENST00000370337.4:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.693G>A
  hgvsp: ENST00000441865.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.693G>A
  hgvsp: ENST00000393920.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.693G>A
  hgvsp: ENST00000370340.3:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.693G>A
  hgvsp: ENST00000276344.2:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.693G>A
  hgvsp: ENST00000431971.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.693G>A
  hgvsp: ENST00000360243.2:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.693G>A
  hgvsp: ENST00000430273.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.693G>A
  hgvsp: ENST00000370335.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val231Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

X-151092834-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092834
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092834
    reference: chr 0
allele count: 4
allele frequency: 4.650567950610968e-5
allele num: 86011
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.698A>T
  hgvsp: ENSP00000359365.3:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.698A>T
  hgvsp: ENSP00000402186.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.698A>T
  hgvsp: ENSP00000359360.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.698A>T
  hgvsp: ENSP00000402624.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.698A>T
  hgvsp: ENSP00000377497.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.698A>T
  hgvsp: ENSP00000394149.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.698A>T
  hgvsp: ENSP00000276344.2:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.698A>T
  hgvsp: ENSP00000377498.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.698A>T
  hgvsp: ENSP00000390096.1:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.698A>T
  hgvsp: ENSP00000353379.2:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.698A>T
  hgvsp: ENSP00000359362.4:p.Asp233Val
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp233Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-151092840-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092840
    reference: chr 0
allele count: 1
allele frequency: 1.162736616901539e-5
allele num: 86004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.704G>T
  hgvsp: ENSP00000390096.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.704G>T
  hgvsp: ENSP00000359365.3:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.704G>T
  hgvsp: ENSP00000402186.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.704G>T
  hgvsp: ENSP00000276344.2:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.704G>T
  hgvsp: ENSP00000359360.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.704G>T
  hgvsp: ENSP00000377497.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.704G>T
  hgvsp: ENSP00000377498.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.704G>T
  hgvsp: ENSP00000359362.4:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.704G>T
  hgvsp: ENSP00000353379.2:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.704G>T
  hgvsp: ENSP00000394149.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.704G>T
  hgvsp: ENSP00000402624.1:p.Arg235Met
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg235Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-151092849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092849
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092849
    reference: chr 0
allele count: 13
allele frequency: 1.511557601972001e-4
allele num: 86004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.713C>G
  hgvsp: ENSP00000394149.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.713C>G
  hgvsp: ENSP00000359362.4:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.713C>G
  hgvsp: ENSP00000377497.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.713C>G
  hgvsp: ENSP00000377498.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.713C>G
  hgvsp: ENSP00000402624.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.713C>G
  hgvsp: ENSP00000402186.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.713C>G
  hgvsp: ENSP00000276344.2:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.713C>G
  hgvsp: ENSP00000359360.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.713C>G
  hgvsp: ENSP00000390096.1:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.713C>G
  hgvsp: ENSP00000359365.3:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.713C>G
  hgvsp: ENSP00000353379.2:p.Thr238Ser
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr238Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-151092854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092854
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092854
    reference: chr 0
allele count: 1
allele frequency: 1.162331171397355e-5
allele num: 86034
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.718T>C
  hgvsp: ENSP00000353379.2:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.718T>C
  hgvsp: ENSP00000359360.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.718T>C
  hgvsp: ENSP00000394149.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.718T>C
  hgvsp: ENSP00000359362.4:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.718T>C
  hgvsp: ENSP00000377497.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.718T>C
  hgvsp: ENSP00000402186.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.718T>C
  hgvsp: ENSP00000359365.3:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.718T>C
  hgvsp: ENSP00000377498.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.718T>C
  hgvsp: ENSP00000390096.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.718T>C
  hgvsp: ENSP00000276344.2:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.718T>C
  hgvsp: ENSP00000402624.1:p.Tyr240His
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr240His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-151092860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092860
    reference: chr 0
allele count: 1
allele frequency: 1.162007018522392e-5
allele num: 86058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.724G>A
  hgvsp: ENSP00000359360.1:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402624
  ensembl transcript: ENST00000441865
  gene symbol: MAGEA4
  hgvsc: ENST00000441865.1:c.724G>A
  hgvsp: ENST00000441865.1:c.724G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.724G>A
  hgvsp: ENSP00000353379.2:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.724G>A
  hgvsp: ENSP00000377497.1:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000394149
  ensembl transcript: ENST00000430273
  gene symbol: MAGEA4
  hgvsc: ENST00000430273.1:c.724G>A
  hgvsp: ENST00000430273.1:c.724G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.724G>A
  hgvsp: ENSP00000276344.2:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.724G>A
  hgvsp: ENSP00000377498.1:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000390096
  ensembl transcript: ENST00000431971
  gene symbol: MAGEA4
  hgvsc: ENST00000431971.1:c.724G>A
  hgvsp: ENST00000431971.1:c.724G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000402186
  ensembl transcript: ENST00000457310
  gene symbol: MAGEA4
  hgvsc: ENST00000457310.1:c.724G>A
  hgvsp: ENST00000457310.1:c.724G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.724G>A
  hgvsp: ENSP00000359362.4:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.724G>A
  hgvsp: ENSP00000359365.3:p.Glu242Lys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu242Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-151092871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092871
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092871
    reference: chr 0
allele count: 5
allele frequency: 5.807740556613855e-5
allele num: 86092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.735A>G
  hgvsp: ENST00000393920.1:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.735A>G
  hgvsp: ENST00000370335.1:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.735A>G
  hgvsp: ENST00000360243.2:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.735A>G
  hgvsp: ENST00000370337.4:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.735A>G
  hgvsp: ENST00000393921.1:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.735A>G
  hgvsp: ENST00000370340.3:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.735A>G
  hgvsp: ENST00000276344.2:c.735A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys245Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

X-151092879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092879
    reference: chr 0
allele count: 1
allele frequency: 1.160941291198904e-5
allele num: 86137
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.743C>T
  hgvsp: ENSP00000377498.1:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.743C>T
  hgvsp: ENSP00000276344.2:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.743C>T
  hgvsp: ENSP00000359365.3:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.743C>T
  hgvsp: ENSP00000359360.1:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.743C>T
  hgvsp: ENSP00000353379.2:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.743C>T
  hgvsp: ENSP00000359362.4:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.743C>T
  hgvsp: ENSP00000377497.1:p.Thr248Ile
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6488
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr248Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-151092886-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092886
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092886
    reference: chr 0
allele count: 2
allele frequency: 2.320158698855002e-5
allele num: 86201
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.750T>G
  hgvsp: ENSP00000359360.1:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.750T>G
  hgvsp: ENSP00000353379.2:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.750T>G
  hgvsp: ENSP00000276344.2:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.750T>G
  hgvsp: ENSP00000377497.1:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.750T>G
  hgvsp: ENSP00000359362.4:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.750T>G
  hgvsp: ENSP00000359365.3:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.750T>G
  hgvsp: ENSP00000377498.1:p.Asp250Glu
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp250Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

X-151092897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092897
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092897
    reference: chr 0
allele count: 1
allele frequency: 1.158882836945185e-5
allele num: 86290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.761A>G
  hgvsp: ENSP00000359360.1:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.761A>G
  hgvsp: ENSP00000377498.1:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.761A>G
  hgvsp: ENSP00000353379.2:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.761A>G
  hgvsp: ENSP00000359362.4:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.761A>G
  hgvsp: ENSP00000276344.2:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.761A>G
  hgvsp: ENSP00000377497.1:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.761A>G
  hgvsp: ENSP00000359365.3:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16918
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu254Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-151092898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092898
    reference: chr 0
allele count: 4
allele frequency: 4.635370192251978e-5
allele num: 86293
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.762A>G
  hgvsp: ENST00000360243.2:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.762A>G
  hgvsp: ENST00000276344.2:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.762A>G
  hgvsp: ENST00000370337.4:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.762A>G
  hgvsp: ENST00000393921.1:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.762A>G
  hgvsp: ENST00000370335.1:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.762A>G
  hgvsp: ENST00000393920.1:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.762A>G
  hgvsp: ENST00000370340.3:c.762A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu254Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

X-151092904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092904
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092904
    reference: chr 0
allele count: 1
allele frequency: 1.158439813259502e-5
allele num: 86323
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.768C>T
  hgvsp: ENST00000370335.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.768C>T
  hgvsp: ENST00000276344.2:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.768C>T
  hgvsp: ENST00000393921.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.768C>T
  hgvsp: ENST00000370337.4:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.768C>T
  hgvsp: ENST00000370340.3:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.768C>T
  hgvsp: ENST00000393920.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.768C>T
  hgvsp: ENST00000360243.2:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16921
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr256Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

X-151092912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092912
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092912
    reference: chr 0
allele count: 5
allele frequency: 5.790723261335341e-5
allele num: 86345
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.776A>G
  hgvsp: ENSP00000377497.1:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.776A>G
  hgvsp: ENSP00000276344.2:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.776A>G
  hgvsp: ENSP00000353379.2:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.776A>G
  hgvsp: ENSP00000377498.1:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.776A>G
  hgvsp: ENSP00000359365.3:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.776A>G
  hgvsp: ENSP00000359362.4:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.776A>G
  hgvsp: ENSP00000359360.1:p.Tyr259Cys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16901
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr259Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-151092914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092914
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092914
    reference: chr 0
allele count: 4
allele frequency: 4.631613075043711e-5
allele num: 86363
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.778C>T
  hgvsp: ENSP00000359360.1:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.778C>T
  hgvsp: ENSP00000353379.2:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.778C>T
  hgvsp: ENSP00000276344.2:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.778C>T
  hgvsp: ENSP00000377497.1:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.778C>T
  hgvsp: ENSP00000359362.4:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.778C>T
  hgvsp: ENSP00000377498.1:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.778C>T
  hgvsp: ENSP00000359365.3:p.Arg260Trp
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg260Trp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-151092915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092915
    reference: chr 0
allele count: 3
allele frequency: 3.470735911704478e-5
allele num: 86437
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.779G>A
  hgvsp: ENSP00000377497.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.779G>A
  hgvsp: ENSP00000353379.2:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.779G>A
  hgvsp: ENSP00000276344.2:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.779G>A
  hgvsp: ENSP00000359362.4:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.779G>A
  hgvsp: ENSP00000377498.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.779G>A
  hgvsp: ENSP00000359360.1:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.779G>A
  hgvsp: ENSP00000359365.3:p.Arg260Gln
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16897
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg260Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

X-151092920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092920
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092920
    reference: chr 0
allele count: 1
allele frequency: 1.155989179941276e-5
allele num: 86506
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.784G>A
  hgvsp: ENSP00000353379.2:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.784G>A
  hgvsp: ENSP00000359360.1:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.784G>A
  hgvsp: ENSP00000377497.1:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.784G>A
  hgvsp: ENSP00000377498.1:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.784G>A
  hgvsp: ENSP00000276344.2:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.784G>A
  hgvsp: ENSP00000359362.4:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.784G>A
  hgvsp: ENSP00000359365.3:p.Val262Ile
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val262Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-151092921-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092921
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092921
    reference: chr 0
allele count: 543
allele frequency: 6.447629338494603e-3
allele num: 84217
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.785T>G
  hgvsp: ENSP00000353379.2:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.785T>G
  hgvsp: ENSP00000377497.1:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.785T>G
  hgvsp: ENSP00000377498.1:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.785T>G
  hgvsp: ENSP00000359365.3:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.785T>G
  hgvsp: ENSP00000359362.4:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.785T>G
  hgvsp: ENSP00000276344.2:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.785T>G
  hgvsp: ENSP00000359360.1:p.Val262Gly
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 12076
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13769
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4168
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 9.75e1
  variant carriers: 863
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 9.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 2.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 14
hgvs: p.Val262Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-151092922-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092922
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092922
    reference: chr 0
allele count: 14
allele frequency: 1.617636863633212e-4
allele num: 86546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.786A>G
  hgvsp: ENST00000370335.1:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.786A>G
  hgvsp: ENST00000370340.3:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.786A>G
  hgvsp: ENST00000276344.2:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.786A>G
  hgvsp: ENST00000370337.4:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.786A>G
  hgvsp: ENST00000393921.1:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.786A>G
  hgvsp: ENST00000393920.1:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.786A>G
  hgvsp: ENST00000360243.2:c.786A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16193
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val262Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

X-151092925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092925
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092925
    reference: chr 0
allele count: 8
allele frequency: 9.240329417743743e-5
allele num: 86577
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.789C>T
  hgvsp: ENST00000276344.2:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.789C>T
  hgvsp: ENST00000370337.4:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.789C>T
  hgvsp: ENST00000393921.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.789C>T
  hgvsp: ENST00000360243.2:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.789C>T
  hgvsp: ENST00000393920.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.789C>T
  hgvsp: ENST00000370340.3:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.789C>T
  hgvsp: ENST00000370335.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16187
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro263Pro
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-151092926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092926
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092926
    reference: chr 0
allele count: 64
allele frequency: 7.390556254835618e-4
allele num: 86597
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.790G>A
  hgvsp: ENSP00000377498.1:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.790G>A
  hgvsp: ENSP00000359365.3:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.790G>A
  hgvsp: ENSP00000359362.4:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.790G>A
  hgvsp: ENSP00000353379.2:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.790G>A
  hgvsp: ENSP00000276344.2:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.790G>A
  hgvsp: ENSP00000359360.1:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.790G>A
  hgvsp: ENSP00000377497.1:p.Gly264Ser
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly264Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

X-151092928-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092928
    reference: chr 0
allele count: 1
allele frequency: 1.154201292705448e-5
allele num: 86640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.792C>G
  hgvsp: ENST00000370340.3:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.792C>G
  hgvsp: ENST00000276344.2:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.792C>G
  hgvsp: ENST00000370335.1:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.792C>G
  hgvsp: ENST00000360243.2:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.792C>G
  hgvsp: ENST00000370337.4:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.792C>G
  hgvsp: ENST00000393921.1:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.792C>G
  hgvsp: ENST00000393920.1:c.792C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly264Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

X-151092929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092929
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092929
    reference: chr 0
allele count: 2
allele frequency: 2.307390572002123e-5
allele num: 86678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.793A>G
  hgvsp: ENSP00000359360.1:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.793A>G
  hgvsp: ENSP00000359365.3:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.793A>G
  hgvsp: ENSP00000276344.2:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.793A>G
  hgvsp: ENSP00000377497.1:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.793A>G
  hgvsp: ENSP00000377498.1:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.793A>G
  hgvsp: ENSP00000359362.4:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.793A>G
  hgvsp: ENSP00000353379.2:p.Ser265Gly
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24031
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser265Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-151092932-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092932
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092932
    reference: chr 0
allele count: 18
allele frequency: 2.076028787599188e-4
allele num: 86704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.796A>G
  hgvsp: ENSP00000359365.3:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.796A>G
  hgvsp: ENSP00000359360.1:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.796A>G
  hgvsp: ENSP00000377498.1:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.796A>G
  hgvsp: ENSP00000276344.2:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.796A>G
  hgvsp: ENSP00000359362.4:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.796A>G
  hgvsp: ENSP00000353379.2:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.796A>G
  hgvsp: ENSP00000377497.1:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16167
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 6643
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Asn266Asp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-151092935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092935
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092935
    reference: chr 0
allele count: 6
allele frequency: 6.91834052072043e-5
allele num: 86726
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.799C>T
  hgvsp: ENSP00000353379.2:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.799C>T
  hgvsp: ENSP00000276344.2:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.799C>T
  hgvsp: ENSP00000359360.1:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.799C>T
  hgvsp: ENSP00000377498.1:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.799C>T
  hgvsp: ENSP00000359362.4:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.799C>T
  hgvsp: ENSP00000359365.3:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.799C>T
  hgvsp: ENSP00000377497.1:p.Pro267Ser
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro267Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-151092939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092939
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092939
    reference: chr 0
allele count: 13
allele frequency: 1.498472710506599e-4
allele num: 86755
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.803C>T
  hgvsp: ENSP00000359365.3:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.803C>T
  hgvsp: ENSP00000377497.1:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.803C>T
  hgvsp: ENSP00000359362.4:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.803C>T
  hgvsp: ENSP00000276344.2:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.803C>T
  hgvsp: ENSP00000359360.1:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.803C>T
  hgvsp: ENSP00000377498.1:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.803C>T
  hgvsp: ENSP00000353379.2:p.Ala268Val
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
  all individuals: 2651
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala268Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-151092940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092940
    reference: chr 0
allele count: 24
allele frequency: 2.76583729962085e-4
allele num: 86773
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.804G>A
  hgvsp: ENST00000393921.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.804G>A
  hgvsp: ENST00000370337.4:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.804G>A
  hgvsp: ENST00000370335.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.804G>A
  hgvsp: ENST00000276344.2:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.804G>A
  hgvsp: ENST00000360243.2:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.804G>A
  hgvsp: ENST00000393920.1:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.804G>A
  hgvsp: ENST00000370340.3:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1253
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16159
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Ala268Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-151092940-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092940
    reference: chr 0
allele count: 103
allele frequency: 1.187005174420615e-3
allele num: 86773
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.804G>T
  hgvsp: ENST00000276344.2:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.804G>T
  hgvsp: ENST00000370337.4:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.804G>T
  hgvsp: ENST00000360243.2:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.804G>T
  hgvsp: ENST00000393920.1:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.804G>T
  hgvsp: ENST00000370335.1:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.804G>T
  hgvsp: ENST00000393921.1:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.804G>T
  hgvsp: ENST00000370340.3:c.804G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12981
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14690
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Ala268Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-151092941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092941
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092941
    reference: chr 0
allele count: 7
allele frequency: 8.066095894357189e-5
allele num: 86783
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.805C>T
  hgvsp: ENSP00000359360.1:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.805C>T
  hgvsp: ENSP00000377498.1:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.805C>T
  hgvsp: ENSP00000359365.3:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.805C>T
  hgvsp: ENSP00000276344.2:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.805C>T
  hgvsp: ENSP00000377497.1:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.805C>T
  hgvsp: ENSP00000353379.2:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.805C>T
  hgvsp: ENSP00000359362.4:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16087
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg269Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-151092942-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092942
    reference: chr 0
allele count: 9
allele frequency: 1.036878305049597e-4
allele num: 86799
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.806G>A
  hgvsp: ENSP00000377497.1:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.806G>A
  hgvsp: ENSP00000359365.3:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.806G>A
  hgvsp: ENSP00000377498.1:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.806G>A
  hgvsp: ENSP00000359362.4:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.806G>A
  hgvsp: ENSP00000276344.2:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.806G>A
  hgvsp: ENSP00000359360.1:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.806G>A
  hgvsp: ENSP00000353379.2:p.Arg269His
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16083
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg269His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

X-151092945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092945
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092945
    reference: chr 0
allele count: 68
allele frequency: 7.830583032969058e-4
allele num: 86839
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.809A>G
  hgvsp: ENSP00000359362.4:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.809A>G
  hgvsp: ENSP00000353379.2:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.809A>G
  hgvsp: ENSP00000377497.1:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.809A>G
  hgvsp: ENSP00000377498.1:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.809A>G
  hgvsp: ENSP00000359365.3:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.809A>G
  hgvsp: ENSP00000359360.1:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.809A>G
  hgvsp: ENSP00000276344.2:p.Tyr270Cys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14734
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16104
  bin: 9.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr270Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

X-151092946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092946
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092946
    reference: chr 0
allele count: 2
allele frequency: 2.302794441054219e-5
allele num: 86851
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.810T>C
  hgvsp: ENST00000393920.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.810T>C
  hgvsp: ENST00000370335.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.810T>C
  hgvsp: ENST00000370337.4:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.810T>C
  hgvsp: ENST00000393921.1:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.810T>C
  hgvsp: ENST00000370340.3:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.810T>C
  hgvsp: ENST00000360243.2:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.810T>C
  hgvsp: ENST00000276344.2:c.810T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr270Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-151092953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092953
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092953
    reference: chr 0
allele count: 1
allele frequency: 1.151052637637119e-5
allele num: 86877
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.817C>T
  hgvsp: ENST00000370337.4:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.817C>T
  hgvsp: ENST00000370335.1:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.817C>T
  hgvsp: ENST00000370340.3:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.817C>T
  hgvsp: ENST00000393920.1:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.817C>T
  hgvsp: ENST00000276344.2:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.817C>T
  hgvsp: ENST00000393921.1:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.817C>T
  hgvsp: ENST00000360243.2:c.817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu273Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-151092964-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092964
    reference: chr 0
allele count: 1
allele frequency: 1.151370706826477e-5
allele num: 86853
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.828A>G
  hgvsp: ENST00000370335.1:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.828A>G
  hgvsp: ENST00000393920.1:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.828A>G
  hgvsp: ENST00000370340.3:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.828A>G
  hgvsp: ENST00000276344.2:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.828A>G
  hgvsp: ENST00000393921.1:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.828A>G
  hgvsp: ENST00000370337.4:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.828A>G
  hgvsp: ENST00000360243.2:c.828A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6657
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro276Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-151092966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092966
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092966
    reference: chr 0
allele count: 2
allele frequency: 2.303006575083772e-5
allele num: 86843
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.830G>A
  hgvsp: ENSP00000276344.2:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.830G>A
  hgvsp: ENSP00000359362.4:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.830G>A
  hgvsp: ENSP00000353379.2:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.830G>A
  hgvsp: ENSP00000359365.3:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.830G>A
  hgvsp: ENSP00000377498.1:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.830G>A
  hgvsp: ENSP00000377497.1:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.830G>A
  hgvsp: ENSP00000359360.1:p.Arg277Lys
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg277Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-151092970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24151092970
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24151092970
    reference: chr 0
allele count: 24
allele frequency: 2.764722145424385e-4
allele num: 86808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359362
  ensembl transcript: ENST00000370337
  gene symbol: MAGEA4
  hgvsc: ENST00000370337.4:c.834T>C
  hgvsp: ENST00000370337.4:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000276344
  ensembl transcript: ENST00000276344
  gene symbol: MAGEA4
  hgvsc: ENST00000276344.2:c.834T>C
  hgvsp: ENST00000276344.2:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377498
  ensembl transcript: ENST00000393921
  gene symbol: MAGEA4
  hgvsc: ENST00000393921.1:c.834T>C
  hgvsp: ENST00000393921.1:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000353379
  ensembl transcript: ENST00000360243
  gene symbol: MAGEA4
  hgvsc: ENST00000360243.2:c.834T>C
  hgvsp: ENST00000360243.2:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359365
  ensembl transcript: ENST00000370340
  gene symbol: MAGEA4
  hgvsc: ENST00000370340.3:c.834T>C
  hgvsp: ENST00000370340.3:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000377497
  ensembl transcript: ENST00000393920
  gene symbol: MAGEA4
  hgvsc: ENST00000393920.1:c.834T>C
  hgvsp: ENST00000393920.1:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147381
  ensembl protein: ENSP00000359360
  ensembl transcript: ENST00000370335
  gene symbol: MAGEA4
  hgvsc: ENST00000370335.1:c.834T>C
  hgvsp: ENST00000370335.1:c.834T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala278Ala
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 7229
bin: 2.75e1
variant carriers: 560

GenotypeDepth
all individuals: 825
bin: 1.25e1
variant carriers: 213

GenotypeDepth
all individuals: 619
bin: 5.75e1
variant carriers: 475

GenotypeDepth
all individuals: 27436
bin: 9.75e1
variant carriers: 27312

GenotypeDepth
all individuals: 1118
bin: 3.75e1
variant carriers: 411

GenotypeDepth
all individuals: 947
bin: 7.75e1
variant carriers: 895

GenotypeDepth
all individuals: 1191
bin: 9.25e1
variant carriers: 1168

GenotypeDepth
all individuals: 547
bin: 5.25e1
variant carriers: 407

GenotypeDepth
all individuals: 1173
bin: 8.75e1
variant carriers: 1141

GenotypeQuality
all individuals: 746
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 52

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 101

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 173

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 92

GenotypeQuality
all individuals: 13944
bin: 6.25e1
variant carriers: 219

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 250
bin: 5.25e1
variant carriers: 183

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 557
bin: 9.25e1
variant carriers: 173

GenotypeQuality
all individuals: 907
bin: 8.25e1
variant carriers: 214

GenotypeQuality
all individuals: 3076
bin: 6.75e1
variant carriers: 238

GenotypeQuality
all individuals: 37101
bin: 9.75e1
variant carriers: 35868

GenotypeQuality
all individuals: 1231
bin: 7.75e1
variant carriers: 181

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 126

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 12

GenotypeQuality
all individuals: 1143
bin: 7.25e1
variant carriers: 127

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 70

European (Non-Finnish)
type: Population
allele count: 26131
allele frequency: 5.458742427407562e-1
allele num: 47870
num of homozygotes: 4278

European (Finnish)
type: Population
allele count: 2261
allele frequency: 4.995581087052585e-1
allele num: 4526
num of homozygotes: 319

East Asian
type: Population
allele count: 3897
allele frequency: 5.892047172664046e-1
allele num: 6614
num of homozygotes: 801

African
type: Population
allele count: 5266
allele frequency: 6.190196308922065e-1
allele num: 8507
num of homozygotes: 1315

Latino
type: Population
allele count: 2701
allele frequency: 2.901493178644323e-1
allele num: 9309
num of homozygotes: 295

South Asian
type: Population
allele count: 4690
allele frequency: 4.786691161461523e-1
allele num: 9798
num of homozygotes: 400

Other
type: Population
allele count: 333
allele frequency: 5.319488817891374e-1
allele num: 626
num of homozygotes: 50

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.595e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.688e1

DP
type: SiteQuality
SIO_000300: 6.020708e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 2.506e1

GenotypeDepth
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4430
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1940
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 678
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2228
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11968
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 372
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072961373390558e-4
allele num: 9320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47817
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9585
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.869e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.069e0

VQSLOD
type: SiteQuality
SIO_000300: -2.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.97e-1

QD
type: SiteQuality
SIO_000300: 3.256e1

DP
type: SiteQuality
SIO_000300: 2.655104e6

GenotypeDepth
all individuals: 11697
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1651
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 871
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 657
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 817
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1273
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1940
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073076510355188e-4
allele num: 9319
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47777
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9457
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 2.647077e6

VQSLOD
type: SiteQuality
SIO_000300: -1.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeDepth
all individuals: 8307
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1618
bin: 6.25e1
variant carriers: 6

GenotypeDepth
all individuals: 862
bin: 7.25e1
variant carriers: 2

GenotypeDepth
all individuals: 866
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1273
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 4433
bin: 9.75e1
variant carriers: 190

GenotypeDepth
all individuals: 2635
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 374
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1720
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21701
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18547
bin: 9.75e1
variant carriers: 257

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 2.03862660944206e-3
allele num: 9320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

African
type: Population
allele count: 246
allele frequency: 2.894117647058823e-2
allele num: 8500
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.281144005694904e-5
allele num: 47762
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 2.645555e6

FS
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.635e0

QD
type: SiteQuality
SIO_000300: 1.703e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.641e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e1

MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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East Asian
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European (Non-Finnish)
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num of homozygotes: 0

Other
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MQ
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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South Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

Latino
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East Asian
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African
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South Asian
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Other
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European (Finnish)
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ClippingRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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QD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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Latino
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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African
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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QD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.118568232662192e-4
allele num: 8940
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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MQ
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SIO_000300: 5.913e1

FS
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.679472645589285e-4
allele num: 47634
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 2.359046945034206e-4
allele num: 8478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 7.858105074090704e-4
allele num: 8908
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ClippingRankSum
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SIO_000300: -1.42e-1

InbreedingCoeff
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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SIO_000300: 5.952e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 8.399302857862797e-5
allele num: 47623
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ReadPosRankSum
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MQ
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DP
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47625
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 1.12637981527371e-4
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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Latino
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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variant carriers: 11

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1223

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1148
bin: 8.75e1
variant carriers: 3

Latino
type: Population
allele count: 45
allele frequency: 4.832474226804124e-3
allele num: 9312
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.286236854138089e-4
allele num: 8748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.470959065310583e-4
allele num: 47588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 1267
allele frequency: 1.495691181678668e-1
allele num: 8471
num of homozygotes: 75

Other
type: Population
allele count: 5
allele frequency: 8.130081300813009e-3
allele num: 615
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.092e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
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SIO_000300: 4.604e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 2.725e1

QD
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SIO_000300: 1.952e1

BaseQRankSum
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SIO_000300: -1.388e0

DP
type: SiteQuality
SIO_000300: 2.613352e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.136234518804681e-4
allele num: 8801
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

DP
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SIO_000300: 2.514816e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8781
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.540658562492624e-4
allele num: 8473
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47593
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.441e0

MQRankSum
type: SiteQuality
SIO_000300: 5.74e-1

ClippingRankSum
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MQ
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SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.515544e6

QD
type: SiteQuality
SIO_000300: 1.712e1

VQSLOD
type: SiteQuality
SIO_000300: -6.726e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 2.539e0

GenotypeDepth
all individuals: 360
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1311
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 1769
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 2268
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GenotypeQuality
all individuals: 2258
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.201151115405621e-5
allele num: 47606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8471
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8807
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.093e0

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 2.516531e6

QD
type: SiteQuality
SIO_000300: 1.316e1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

FS
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 65
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.1000021000021e-5
allele num: 47619
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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QD
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VQSLOD
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MQ
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SIO_000300: 5.926e1

FS
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GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2526
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0994730322689e-5
allele num: 47631
num of homozygotes: 0

Other
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East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeDepth
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variant carriers: 35

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2265
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 18126
bin: 9.75e1
variant carriers: 2090

European (Non-Finnish)
type: Population
allele count: 1653
allele frequency: 3.468390020772572e-2
allele num: 47659
num of homozygotes: 20

Other
type: Population
allele count: 14
allele frequency: 2.272727272727273e-2
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 4.006599104407259e-3
allele num: 8486
num of homozygotes: 0

Latino
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allele count: 70
allele frequency: 7.518796992481203e-3
allele num: 9310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 77
allele frequency: 1.700530035335689e-2
allele num: 4528
num of homozygotes: 1

South Asian
type: Population
allele count: 457
allele frequency: 5.108999441028508e-2
allele num: 8945
num of homozygotes: 6

QD
type: SiteQuality
SIO_000300: 2.003e1

BaseQRankSum
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SIO_000300: -1.298e0

MQRankSum
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SIO_000300: 2.32e-1

DP
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SIO_000300: 2.584035e6

FS
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.823e-1

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 9

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 46
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.233139794551139e-4
allele num: 8956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.469137616219279e-4
allele num: 47647
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074229240519927e-4
allele num: 9309
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

QD
type: SiteQuality
SIO_000300: 1.781e1

DP
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SIO_000300: 2.370148e6

VQSLOD
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SIO_000300: 5.04e0

ReadPosRankSum
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SIO_000300: 6.02e-1

InbreedingCoeff
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SIO_000300: 1.336e-1

ClippingRankSum
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SIO_000300: -3.3e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22146
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GenotypeQuality
all individuals: 16952
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177163037080636e-4
allele num: 8495
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.447e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.593e0

InbreedingCoeff
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SIO_000300: 1.0e-4

BaseQRankSum
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SIO_000300: -2.16e0

QD
type: SiteQuality
SIO_000300: 1.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 2.36661e6

GenotypeDepth
all individuals: 1690
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099340806986606e-5
allele num: 47634
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.888e-1

DP
type: SiteQuality
SIO_000300: 2.36623e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
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SIO_000300: -1.668e0

QD
type: SiteQuality
SIO_000300: 1.951e1

BaseQRankSum
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SIO_000300: -7.96e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

FS
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.97e-2

GenotypeDepth
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bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 433
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variant carriers: 0

GenotypeDepth
all individuals: 851
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variant carriers: 0

GenotypeDepth
all individuals: 598
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GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 31
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6478
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099825714465699e-5
allele num: 47623
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
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SIO_000300: 2.53e-2

VQSLOD
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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MQRankSum
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MQ
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SIO_000300: 5.431e1

FS
type: SiteQuality
SIO_000300: 1.707e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47621
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.19e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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South Asian
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allele count: 2
allele frequency: 2.248201438848921e-4
allele num: 8896
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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QD
type: SiteQuality
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GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 1690
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.245424946671157e-4
allele num: 8907
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47613
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.428e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.731e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.592e0

QD
type: SiteQuality
SIO_000300: 2.058e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.88e-2

DP
type: SiteQuality
SIO_000300: 2.364017e6

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeDepth
all individuals: 4200
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 310
bin: 8.75e1
variant carriers: 1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2372
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16955
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 2344
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 27
allele frequency: 3.174976481655691e-3
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.326e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.094e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 2.364019e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

GenotypeDepth
all individuals: 851
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11757
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variant carriers: 0

GenotypeDepth
all individuals: 598
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variant carriers: 0

GenotypeDepth
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
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variant carriers: 0

GenotypeQuality
all individuals: 2612
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variant carriers: 0

GenotypeQuality
all individuals: 6456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 21977
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GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16955
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
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GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 1221
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.126126126126126e-4
allele num: 8880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 2.364019e6

VQSLOD
type: SiteQuality
SIO_000300: 6.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.094e-1

QD
type: SiteQuality
SIO_000300: 2.326e1

GenotypeDepth
all individuals: 600
bin: 7.75e1
variant carriers: 3

GenotypeDepth
all individuals: 2387
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3297
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 433
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22018
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
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GenotypeQuality
all individuals: 2611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16974
bin: 9.75e1
variant carriers: 72

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.249465751883927e-4
allele num: 8891
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.372877713303245e-4
allele num: 9306
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 4.586616488298247e-3
allele num: 8503
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.260738507912585e-3
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.4704337779645e-4
allele num: 47605
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.545253863134658e-3
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 1.091e0

VQSLOD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

QD
type: SiteQuality
SIO_000300: 1.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 2.366866e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.235e-1

GenotypeDepth
all individuals: 4198
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 13735
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 849
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1688
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 1222
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22018
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variant carriers: 0

GenotypeQuality
all individuals: 16974
bin: 9.75e1
variant carriers: 26

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8891
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 3.175349876514172e-3
allele num: 8503
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47605
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.235e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

DP
type: SiteQuality
SIO_000300: 2.366866e6

VQSLOD
type: SiteQuality
SIO_000300: 1.444e1

GenotypeDepth
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 3104
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variant carriers: 0

GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 1228
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 22049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 2614
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 16923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
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GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 122
bin: 4.75e1
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GenotypeQuality
all individuals: 6465
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variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8871
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100796201760467e-5
allele num: 47601
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.117e1

DP
type: SiteQuality
SIO_000300: 2.359201e6

FS
type: SiteQuality
SIO_000300: 2.183e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.786e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeDepth
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 470
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6472
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16924
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1818
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101502574340654e-5
allele num: 47585
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.262699400384659e-4
allele num: 8839
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -7.725e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.97e-2

DP
type: SiteQuality
SIO_000300: 2.359489e6

QD
type: SiteQuality
SIO_000300: 1.752e1

FS
type: SiteQuality
SIO_000300: 4.951e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

GenotypeDepth
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.987e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

FS
type: SiteQuality
SIO_000300: 1.1623e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 2.358984e6

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeDepth
all individuals: 221
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2607
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 482
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GenotypeQuality
all individuals: 90
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 9.409550693954364e-4
allele num: 8502
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.520795660036166e-4
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101016892175813e-5
allele num: 47596
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074460083807887e-4
allele num: 9307
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

FS
type: SiteQuality
SIO_000300: 5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.74e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 2.092e1

DP
type: SiteQuality
SIO_000300: 2.359191e6

GenotypeDepth
all individuals: 2391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
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GenotypeQuality
all individuals: 1226
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 1817
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variant carriers: 0

GenotypeQuality
all individuals: 22085
bin: 6.25e1
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GenotypeQuality
all individuals: 2607
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47589
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: -5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

DP
type: SiteQuality
SIO_000300: 2.358153e6

FS
type: SiteQuality
SIO_000300: 6.992e0

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.716e1

GenotypeDepth
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 6486
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 501
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2343
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3102
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.127777151234916e-4
allele num: 8867
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.3584e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 3.422e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2341
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variant carriers: 0

GenotypeQuality
all individuals: 6488
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variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9307
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.301859048419283e-5
allele num: 47605
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.123848055742864e-4
allele num: 8898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.599e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.61e-2

MQ
type: SiteQuality
SIO_000300: 5.842e1

FS
type: SiteQuality
SIO_000300: 4.343e0

QD
type: SiteQuality
SIO_000300: 2.345e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 2.359883e6

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16917
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.100266733875202e-5
allele num: 47613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8503
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.244e0

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

FS
type: SiteQuality
SIO_000300: 2.122e0

QD
type: SiteQuality
SIO_000300: 1.867e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.751e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 2.360603e6

GenotypeQuality
all individuals: 16917
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2608
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

African
type: Population
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allele frequency: 2.352664392424421e-4
allele num: 8501
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47627
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.506e1

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 2.361407e6

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2608
bin: 7.25e1
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 3103
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9045
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098371663589055e-5
allele num: 47656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 3.502e0

MQRankSum
type: SiteQuality
SIO_000300: -1.579e0

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

DP
type: SiteQuality
SIO_000300: 2.363543e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

GenotypeQuality
all individuals: 1922
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2344
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 93
bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16921
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47653
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.520114509567576e-4
allele num: 6637
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.322e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.67e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.363602e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.31e-2

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

GenotypeQuality
all individuals: 6475
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2601
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GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17633219621221e-4
allele num: 8501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47665
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.593e0

DP
type: SiteQuality
SIO_000300: 2.365123e6

FS
type: SiteQuality
SIO_000300: 2.299e0

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: -9.961e-1

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9127
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.397186942374304e-5
allele num: 47635
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

VQSLOD
type: SiteQuality
SIO_000300: -3.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.72e-2

QD
type: SiteQuality
SIO_000300: 2.196e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
type: SiteQuality
SIO_000300: 2.368728e6

FS
type: SiteQuality
SIO_000300: 2.465e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e0

GenotypeQuality
all individuals: 404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1221
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.198064692176906e-5
allele num: 47641
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.415011037527594e-4
allele num: 4530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.102e0

QD
type: SiteQuality
SIO_000300: 1.53e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 2.368966e6

GenotypeQuality
all individuals: 425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 13
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9175
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176609012825038e-4
allele num: 8499
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.195598816841134e-5
allele num: 47669
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.369566e6

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

FS
type: SiteQuality
SIO_000300: 1.773e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 6451
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GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 2577
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variant carriers: 0

GenotypeQuality
all individuals: 2334
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GenotypeQuality
all individuals: 16895
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9221
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47689
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e-1

FS
type: SiteQuality
SIO_000300: 5.883e0

QD
type: SiteQuality
SIO_000300: 1.485e1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 2.369748e6

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
all individuals: 22294
bin: 6.25e1
variant carriers: 41

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
all individuals: 279
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GenotypeQuality
all individuals: 15389
bin: 9.75e1
variant carriers: 643

South Asian
type: Population
allele count: 3
allele frequency: 3.267617906546128e-4
allele num: 9181
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.511389398682932e-3
allele num: 9263
num of homozygotes: 0

African
type: Population
allele count: 88
allele frequency: 1.081612586037365e-2
allele num: 8136
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.278250303766707e-3
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.025641025641026e-2
allele num: 585
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 126
allele frequency: 3.011472275334608e-2
allele num: 4184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 291
allele frequency: 6.287269898885144e-3
allele num: 46284
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e0

MQRankSum
type: SiteQuality
SIO_000300: -1.331e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.666e0

FS
type: SiteQuality
SIO_000300: 2.34451e2

QD
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 5.791e1

DP
type: SiteQuality
SIO_000300: 2.397212e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.606e2

GenotypeQuality
all individuals: 1889
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 6613
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.147766323024055e-4
allele num: 9312
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.096567918317714e-4
allele num: 47697
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17633219621221e-4
allele num: 8501
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.184667e6

MQ
type: SiteQuality
SIO_000300: 5.753e1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

QD
type: SiteQuality
SIO_000300: 2.08e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 23591
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.385392646010649e-5
allele num: 47702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.295071405562117e-4
allele num: 9313
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

DP
type: SiteQuality
SIO_000300: 2.185776e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.698e0

QD
type: SiteQuality
SIO_000300: 2.335e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.324e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 1518
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GenotypeQuality
all individuals: 6624
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GenotypeQuality
all individuals: 1252
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GenotypeQuality
all individuals: 306
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GenotypeQuality
all individuals: 3187
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GenotypeQuality
all individuals: 2639
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GenotypeQuality
all individuals: 16196
bin: 9.75e1
variant carriers: 63

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09643605870021e-5
allele num: 47700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.228931223764934e-4
allele num: 9291
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 55
allele frequency: 6.466023983070774e-3
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.367686527106817e-4
allele num: 9315
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.187918e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

FS
type: SiteQuality
SIO_000300: 2.428e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.84e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.699e-1

GenotypeQuality
all individuals: 6635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16162
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

VQSLOD
type: SiteQuality
SIO_000300: -3.432e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.183491e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
all individuals: 2644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.140410958904109e-4
allele num: 9344
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.184253e6

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.556e-1

QD
type: SiteQuality
SIO_000300: 3.128e1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.028636021100226e-4
allele num: 6635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.885527528701919e-4
allele num: 47732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.270310665100886e-4
allele num: 9367
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.073537305421363e-4
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.18639e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.912e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.460000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.612e-1

QD
type: SiteQuality
SIO_000300: 1.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.18e-1

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16158
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9383
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.507159005275056e-4
allele num: 6635
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.147535702781059e-4
allele num: 9313
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.284038542103058e-5
allele num: 47740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.546e1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 2.18612e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.774e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.87e-2

GenotypeQuality
all individuals: 3200
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16156
bin: 9.75e1
variant carriers: 13

African
type: Population
allele count: 1
allele frequency: 1.175778953556731e-4
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9411
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094767271356152e-5
allele num: 47738
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.657874905802562e-3
allele num: 6635
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.187158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.996e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.587e0

FS
type: SiteQuality
SIO_000300: 1.113e0

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 1.824e1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3204
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.415011037527594e-4
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.121790791427965e-4
allele num: 9426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9313
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.013863773357444e-4
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 3.770344148635345e-4
allele num: 47741
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.487e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 2.193078e6

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.703e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6652
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16159
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 1290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24351
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.801386648792443e-3
allele num: 47741
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 8.830022075055188e-4
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.703115814226925e-4
allele num: 8505
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.368839256952647e-4
allele num: 9313
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.24358158285593e-4
allele num: 9426
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.703e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.487e-1

QD
type: SiteQuality
SIO_000300: 1.982e1

DP
type: SiteQuality
SIO_000300: 2.193078e6

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9437
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.147535702781059e-4
allele num: 9313
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.379244611098309e-5
allele num: 47737
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.605136436597111e-3
allele num: 623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

QD
type: SiteQuality
SIO_000300: 1.554e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 2.178014e6

GenotypeQuality
all individuals: 1899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8505
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.602564102564103e-3
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.147305132059266e-4
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.256623452782374e-4
allele num: 47747
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9443
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.317e-1

DP
type: SiteQuality
SIO_000300: 2.177781e6

FS
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.504e1

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 2.308e1

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24609
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.05496360375567e-4
allele num: 9479
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.188393960335909e-5
allele num: 47751
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 4.349870679520339e-3
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 3.006227184882972e-3
allele num: 9314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.442e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

DP
type: SiteQuality
SIO_000300: 2.183836e6

QD
type: SiteQuality
SIO_000300: 1.873e1

VQSLOD
type: SiteQuality
SIO_000300: 1.612e1

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16067
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 2.351281448389372e-4
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9491
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47749
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.175059e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 3209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1898
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24726
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9513
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47755
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

QD
type: SiteQuality
SIO_000300: 3.153e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 2.176098e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.523e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

GenotypeQuality
all individuals: 24796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47743
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 617
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506931886678722e-4
allele num: 6636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.418e1

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e0

MQRankSum
type: SiteQuality
SIO_000300: -2.126e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.176549e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 3.241e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16070
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 3.013863773357444e-4
allele num: 6636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47741
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9497
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.176327e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.25e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.945e0

QD
type: SiteQuality
SIO_000300: 2.039e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.606e0