X-70331218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331218
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331218
    reference: chr 0
allele count: 1
allele frequency: 2.276815190910954e-5
allele num: 43921
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.52+29G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-239G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+57G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+57G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+57G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.183G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+57G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1070
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genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

X-70331219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331219
    reference: chr 0
allele count: 1
allele frequency: 2.245979696343545e-5
allele num: 44524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+56C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-240C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+56C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+56C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.52+28C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.182C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+56C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 463
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-70331220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331220
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 45342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+55C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.181C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-241C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+55C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+55C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+55C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.52+27C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-70331225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331225
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331225
    reference: chr 0
allele count: 1
allele frequency: 2.059180857854745e-5
allele num: 48563
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.176A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-246A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+50A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+50A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+50A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+50A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.52+22A>G
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4147
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

X-70331231-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331231
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331231
    reference: chr 0
allele count: 26
allele frequency: 4.906771344455348e-4
allele num: 52988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.52+16G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+44G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+44G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+44G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-252G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+44G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.170G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
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genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 232
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-70331253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331253
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331253
    reference: chr 0
allele count: 1
allele frequency: 1.419789019351724e-5
allele num: 70433
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.148G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+22G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+22G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.46G>A
  hgvsp: ENSP00000423601.1:p.Gly16Arg
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+22G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-274G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+22G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15700
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
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  variant carriers: 0
hgvs: p.Gly16Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

X-70331262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331262
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331262
    reference: chr 0
allele count: 2
allele frequency: 2.624017633398496e-5
allele num: 76219
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.139G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+13G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-283G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+13G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.37G>A
  hgvsp: ENSP00000423601.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+13G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+13G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly13Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-70331264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331264
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331264
    reference: chr 0
allele count: 1
allele frequency: 1.289989680082559e-5
allele num: 77520
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.115+11T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.24+11T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-18+11T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.35T>C
  hgvsp: ENSP00000423601.1:p.Leu12Pro
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.182+11T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-285T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.137T>C
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10343
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu12Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-70331276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331276
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331276
    reference: chr 0
allele count: 1
allele frequency: 1.212488632919066e-5
allele num: 82475
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.181T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.125T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-297T>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.23T>C
  hgvsp: ENSP00000423601.1:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.114T>C
  hgvsp: ENST00000374202.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.23T>C
  hgvsp: ENSP00000388967.2:p.Leu8Pro
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-19T>C
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37822
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 5134
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 284
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genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu8Pro
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-70331298-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331298
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331298
    reference: chr 0
allele count: 10
allele frequency: 1.159595069401765e-4
allele num: 86237
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-41A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000388967
  ensembl transcript: ENST00000456850
  gene symbol: IL2RG
  hgvsc: ENST00000456850.2:c.1A>G
  hgvsp: ENSP00000388967.2:p.Met1?
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-319A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.92A>G
  hgvsp: ENSP00000363318.2:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.1A>G
  hgvsp: ENSP00000423601.1:p.Met1?
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.159A>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.103A>G
  variant of: http://identifiers.org/hgnc/6010
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41207
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-70331302-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331302
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331302
    reference: chr 0
allele count: 1
allele frequency: 1.155962454339483e-5
allele num: 86508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-45C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-323C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-4C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.99C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.88C>A
  hgvsp: ENSP00000363318.2:p.Pro30Thr
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.155C>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41351
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genotype quality: GenotypeQuality
  all individuals: 47712
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genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4037
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1172
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1160
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genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro30Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS

X-70331303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331303
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331303
    reference: chr 0
allele count: 3
allele frequency: 3.465523813924475e-5
allele num: 86567
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-46G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.98G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.87G>A
  hgvsp: ENST00000374202.2:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-324G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.154G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr29Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

X-70331304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331304
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331304
    reference: chr 0
allele count: 5
allele frequency: 5.77187251087998e-5
allele num: 86627
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.86C>T
  hgvsp: ENSP00000363318.2:p.Thr29Met
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-325C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.153C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.97C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47592
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Thr29Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

X-70331312-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331312
    reference: chr 0
allele count: 15
allele frequency: 1.724038848342049e-4
allele num: 87005
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-55A>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.89A>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-14A>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-333A>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.78A>T
  hgvsp: ENST00000374202.2:c.78A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.145A>T
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11572
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr26Thr
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-70331312-TGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331312
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331309
    reference: chr 0
allele count: 2
allele frequency: 2.298718464456066e-5
allele num: 87005
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.75_77delGAC
  hgvsp: ENSP00000363318.2:p.Thr26del
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.86_88delGAC
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-17_-15delGAC
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-58_-56delGAC
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-336_-334delGAC
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.142_144delGAC
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41485
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr26del
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TGTC
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

X-70331315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331315
    reference: chr 0
allele count: 1
allele frequency: 1.148672708685114e-5
allele num: 87057
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.86G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.142G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-58G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.75G>A
  hgvsp: ENST00000374202.2:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-336G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr25Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-70331316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331316
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331316
    reference: chr 0
allele count: 2
allele frequency: 2.296474911011597e-5
allele num: 87090
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.74C>T
  hgvsp: ENSP00000363318.2:p.Thr25Met
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-59C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.141C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-337C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.85C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41397
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
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genotype depth: GenotypeDepth
  all individuals: 106
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genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
  all individuals: 481
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genotype depth: GenotypeDepth
  all individuals: 132
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genotype depth: GenotypeDepth
  all individuals: 82
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genotype depth: GenotypeDepth
  all individuals: 262
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genotype quality: GenotypeQuality
  all individuals: 101
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genotype quality: GenotypeQuality
  all individuals: 107
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genotype quality: GenotypeQuality
  all individuals: 4193
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 300
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genotype quality: GenotypeQuality
  all individuals: 748
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genotype quality: GenotypeQuality
  all individuals: 751
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 117
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr25Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-70331321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331321
    reference: chr 0
allele count: 2
allele frequency: 2.293762113931164e-5
allele num: 87193
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.80G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.69G>A
  hgvsp: ENST00000374202.2:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-342G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-64G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.136G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 132
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genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 2742
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genotype quality: GenotypeQuality
  all individuals: 303
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genotype quality: GenotypeQuality
  all individuals: 1233
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu23Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-70331330-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331330
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331330
    reference: chr 0
allele count: 1
allele frequency: 1.145632847585006e-5
allele num: 87288
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.60A>C
  hgvsp: ENST00000374202.2:c.60A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-32A>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-351A>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.71A>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.127A>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-73A>C
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
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genotype depth: GenotypeDepth
  all individuals: 467
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genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
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genotype depth: GenotypeDepth
  all individuals: 551
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genotype depth: GenotypeDepth
  all individuals: 132
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genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 175
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genotype depth: GenotypeDepth
  all individuals: 293
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genotype quality: GenotypeQuality
  all individuals: 123
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 1257
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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genotype quality: GenotypeQuality
  all individuals: 48715
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genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly20Gly
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-70331339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331339
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331339
    reference: chr 0
allele count: 1
allele frequency: 1.145239240477336e-5
allele num: 87318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-360C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.118C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-82C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.62C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.51C>T
  hgvsp: ENST00000374202.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro17Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-70331390-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331390
    reference: chr 0
allele count: 1
allele frequency: 1.192790772570583e-5
allele num: 83837
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-411C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.11C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-46C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-1C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-92C>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.67C>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38783
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

X-70331390-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331390
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331390
    reference: chr 0
allele count: 1
allele frequency: 1.192790772570583e-5
allele num: 83837
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-1C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-92C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.11C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-411C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.67C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-46C>G
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32344
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38783
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

X-70331393-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331393
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331393
    reference: chr 0
allele count: 2
allele frequency: 2.403759479826449e-5
allele num: 83203
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.8C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-414C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-4C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.64C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-95C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-49C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10456
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36513
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9061
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-70331398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331398
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331398
    reference: chr 0
allele count: 1
allele frequency: 1.214697843911327e-5
allele num: 82325
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423601
  ensembl transcript: ENST00000473378
  gene symbol: IL2RG
  hgvsc: ENST00000473378.1:c.-100G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000423966
  ensembl transcript: ENST00000487883
  gene symbol: IL2RG
  hgvsc: ENST00000487883.1:c.-419G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-9G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000276110
  gene symbol: IL2RG
  hgvsc: ENST00000276110.2:n.3G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-54G>A
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.59G>A
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-70331415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331415
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331415
    reference: chr 0
allele count: 1
allele frequency: 1.253211354094868e-5
allele num: 79795
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.42C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-71C>T
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-26C>T
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

X-70331424-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331424
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331424
    reference: chr 0
allele count: 1
allele frequency: 1.282034845707106e-5
allele num: 78001
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-80G>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-35G>C
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.33G>C
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3205
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

X-70331439-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070331439
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070331439
    reference: chr 0
allele count: 1
allele frequency: 1.359120377291817e-5
allele num: 73577
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147168
  ensembl transcript: ENST00000512747
  gene symbol: IL2RG
  hgvsc: ENST00000512747.1:n.18C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000363318
  ensembl transcript: ENST00000374202
  gene symbol: IL2RG
  hgvsc: ENST00000374202.2:c.-50C>G
  variant of: http://identifiers.org/hgnc/6010
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147168
  ensembl protein: ENSP00000425233
  ensembl transcript: ENST00000464642
  gene symbol: IL2RG
  hgvsc: ENST00000464642.1:c.-87-95C>G
  variant of: http://identifiers.org/hgnc/6010
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1019
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-70338558-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338558
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338558
    reference: chr 0
allele count: 6
allele frequency: 1.738928819846974e-4
allele num: 34504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-47A>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-47A>T
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 252
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
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X-70338566-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338566
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338566
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 35275
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-39T>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-39T>G
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
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  allele num: 5919
  num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-70338569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338569
    reference: chr 0
allele count: 1
allele frequency: 2.802140835598397e-5
allele num: 35687
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-36C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: South Asian
population: African
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population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
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site quality: BaseQRankSum
site quality: InbreedingCoeff
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site quality: VQSLOD
site quality: DP
site quality: QD

X-70338573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338573
    reference: chr 0
allele count: 2
allele frequency: 5.53801849698178e-5
allele num: 36114
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.-32G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-32G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
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  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
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population: Other
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population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
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X-70338577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338577
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338577
    reference: chr 0
allele count: 3
allele frequency: 8.113590263691683e-5
allele num: 36975
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
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  gene symbol: MED12
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  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
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  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-28G>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
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  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
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  variant of: http://identifiers.org/hgnc/11957
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-70338593-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338593
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338593
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 43885
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-12G>C
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.-12G>C
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-12G>C
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 948
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

X-70338594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338594
    reference: chr 0
allele count: 1
allele frequency: 2.249566958360516e-5
allele num: 44453
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.-11G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-11G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-11G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13785
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-70338602-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338602
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338602
    reference: chr 0
allele count: 1
allele frequency: 2.057316847367663e-5
allele num: 48607
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.-3A>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.-3A>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.-3A>G
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

X-70338624-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338624
    reference: chr 0
allele count: 1
allele frequency: 1.620587949308009e-5
allele num: 61706
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.20T>G
  hgvsp: ENSP00000363193.3:p.Leu7Trp
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.20T>G
  hgvsp: ENSP00000333125.6:p.Leu7Trp
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.20T>G
  hgvsp: ENSP00000363215.1:p.Leu7Trp
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu7Trp
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

X-70338631-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338631
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338631
    reference: chr 0
allele count: 2
allele frequency: 3.104384943733023e-5
allele num: 64425
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.27C>T
  hgvsp: ENST00000333646.6:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.27C>T
  hgvsp: ENST00000374102.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.27C>T
  hgvsp: ENST00000374080.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
hgvs: p.Tyr9Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-70338644-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338644
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338644
    reference: chr 0
allele count: 1
allele frequency: 1.455392228205501e-5
allele num: 68710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.40C>G
  hgvsp: ENSP00000333125.6:p.Leu14Val
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.40C>G
  hgvsp: ENSP00000363193.3:p.Leu14Val
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.40C>G
  hgvsp: ENSP00000363215.1:p.Leu14Val
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Leu14Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-70338650-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338650
    reference: chr 0
allele count: 1
allele frequency: 1.431721215244967e-5
allele num: 69846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.46C>A
  hgvsp: ENST00000333646.6:c.46C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.46C>A
  hgvsp: ENST00000374102.1:c.46C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.46C>A
  hgvsp: ENST00000374080.3:c.46C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg16Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-70338658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338658
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338658
    reference: chr 0
allele count: 2
allele frequency: 2.825018362619357e-5
allele num: 70796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.54G>A
  hgvsp: ENST00000333646.6:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.54G>A
  hgvsp: ENST00000374102.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.54G>A
  hgvsp: ENST00000374080.3:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 585
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  variant carriers: 0
hgvs: p.Arg18Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

X-70338662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338662
    reference: chr 0
allele count: 1
allele frequency: 1.410417342491643e-5
allele num: 70901
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.58G>A
  hgvsp: ENSP00000363215.1:p.Gly20Arg
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.58G>A
  hgvsp: ENSP00000333125.6:p.Gly20Arg
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.58G>A
  hgvsp: ENSP00000363193.3:p.Gly20Arg
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13701
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly20Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

X-70338664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338664
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338664
    reference: chr 0
allele count: 1
allele frequency: 1.409403540421693e-5
allele num: 70952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.60G>A
  hgvsp: ENST00000333646.6:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.60G>A
  hgvsp: ENST00000374102.1:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.60G>A
  hgvsp: ENST00000374080.3:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly20Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-70338674-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338674
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338673
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 71179
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.73delT
  hgvsp: ENSP00000363193.3:p.Tyr25ThrfsTer12
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.73delT
  hgvsp: ENSP00000333125.6:p.Tyr25ThrfsTer12
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.73delT
  hgvsp: ENSP00000363215.1:p.Tyr25ThrfsTer12
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr25ThrfsTer12
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: GT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ

X-70338678-ACCCTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338678
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338673
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 70417
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.75_79delCCCTC
  hgvsp: ENSP00000363215.1:p.Tyr25Ter
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.75_79delCCCTC
  hgvsp: ENSP00000363193.3:p.Tyr25Ter
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.75_79delCCCTC
  hgvsp: ENSP00000333125.6:p.Tyr25Ter
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 291
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genotype quality: GenotypeQuality
  all individuals: 950
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genotype quality: GenotypeQuality
  all individuals: 33395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr25Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: ACCCTC
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-70338680-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338680
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338680
    reference: chr 0
allele count: 2
allele frequency: 2.840828385557228e-5
allele num: 70402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.76C>G
  hgvsp: ENSP00000333125.6:p.Pro26Ala
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.76C>G
  hgvsp: ENSP00000363215.1:p.Pro26Ala
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.76C>G
  hgvsp: ENSP00000363193.3:p.Pro26Ala
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro26Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-70338686-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338686
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338686
    reference: chr 0
allele count: 1
allele frequency: 1.432849507816194e-5
allele num: 69791
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.2G>A
  hgvsp: ENST00000429213.1:c.2G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.82G>A
  hgvsp: ENSP00000333125.6:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.82G>A
  hgvsp: ENSP00000363193.3:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.82G>A
  hgvsp: ENSP00000363215.1:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp28Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-70338701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338701
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338701
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 66524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.97G>A
  hgvsp: ENSP00000333125.6:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.97G>A
  hgvsp: ENSP00000363215.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
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  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.97G>A
  hgvsp: ENSP00000363193.3:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.17G>A
  hgvsp: ENST00000429213.1:c.17G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu33Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

X-70338736-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338736
    reference: chr 0
allele count: 1
allele frequency: 1.891288724136627e-5
allele num: 52874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.19+33G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.99+33G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.99+33G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.99+33G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
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site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-70338739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338739
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338739
    reference: chr 0
allele count: 1
allele frequency: 1.879275351424491e-5
allele num: 53212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.19+36G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.99+36G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.99+36G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
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  gene symbol: MED12
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  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
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site quality: ReadPosRankSum

X-70338743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338743
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338743
    reference: chr 0
allele count: 1
allele frequency: 1.968581440214182e-5
allele num: 50798
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.99+40C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.99+40C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.99+40C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
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  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.19+40C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
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X-70338744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338744
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338744
    reference: chr 0
allele count: 6
allele frequency: 1.179106237471996e-4
allele num: 50886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.99+41G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.99+41G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
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  hgvsc: ENST00000429213.1:c.19+41G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
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  hgvsc: ENST00000374080.3:c.99+41G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
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site quality: FS
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X-70338752-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070338752
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070338752
    reference: chr 0
allele count: 1
allele frequency: 2.080905610121525e-5
allele num: 48056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.19+49C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.99+49C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.99+49C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
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  ensembl gene: ENSG00000184634
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  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.99+49C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
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site quality: BaseQRankSum

X-70339140-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339140
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339140
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15617
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.20-49C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-83C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-83C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
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  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-83C>G
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

X-70339159-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339159
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339159
    reference: chr 0
allele count: 156
allele frequency: 9.792843691148776e-3
allele num: 15930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-64A>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-64A>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-64A>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.20-30A>G
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 7
num of homozygotes: 2
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

X-70339174-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339174
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339174
    reference: chr 0
allele count: 1
allele frequency: 5.971218725741924e-5
allele num: 16747
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-49C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-49C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.20-15C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-49C>G
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 487
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

X-70339182-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339182
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339182
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 17418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-41C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-41C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.20-7C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-41C>G
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
hgvs: c.20-7C>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-70339200-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339200
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339200
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 19716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.31T>G
  hgvsp: ENSP00000399084.1:p.Leu11Arg
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-23T>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-23T>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-23T>G
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25929
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu11Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

X-70339208-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339208
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339208
    reference: chr 0
allele count: 1
allele frequency: 4.595588235294118e-5
allele num: 21760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-15G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.39G>A
  hgvsp: ENSP00000399084.1:p.Ala14Thr
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-15G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-15G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala14Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
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site quality: MQ

X-70339213-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339213
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339213
    reference: chr 0
allele count: 1
allele frequency: 4.282838665467472e-5
allele num: 23349
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.100-10C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.44C>G
  hgvsp: ENSP00000399084.1:p.Phe15Leu
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.100-10C>G
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.100-10C>G
  variant of: http://identifiers.org/hgnc/11957
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Phe15Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

X-70339228-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339228
    reference: chr 0
allele count: 1
allele frequency: 3.549623739883572e-5
allele num: 28172
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.105A>G
  hgvsp: ENST00000374080.3:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.59A>G
  hgvsp: ENST00000429213.1:c.59A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.105A>G
  hgvsp: ENST00000374102.1:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.105A>G
  hgvsp: ENST00000333646.6:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu35Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

X-70339232-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339232
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339232
    reference: chr 0
allele count: 1
allele frequency: 3.404603023287484e-5
allele num: 29372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.63A>T
  hgvsp: ENSP00000399084.1:p.Thr22Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.109A>T
  hgvsp: ENSP00000333125.6:p.Thr37Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.109A>T
  hgvsp: ENSP00000363193.3:p.Thr37Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.109A>T
  hgvsp: ENSP00000363215.1:p.Thr37Ser
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13039
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr37Ser
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS

X-70339252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339252
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339252
    reference: chr 0
allele count: 3
allele frequency: 8.294625082946251e-5
allele num: 36168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.129A>G
  hgvsp: ENST00000333646.6:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.129A>G
  hgvsp: ENST00000374102.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.129A>G
  hgvsp: ENST00000374080.3:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.83A>G
  hgvsp: ENST00000429213.1:c.83A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2580
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 470
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  variant carriers: 0
hgvs: p.Gln43Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-70339254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339254
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339254
    reference: chr 0
allele count: 1
allele frequency: 2.727843094465206e-5
allele num: 36659
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.85G>A
  hgvsp: ENSP00000399084.1:p.Gly29Asp
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.131G>A
  hgvsp: ENSP00000333125.6:p.Gly44Asp
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.131G>A
  hgvsp: ENSP00000363193.3:p.Gly44Asp
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.131G>A
  hgvsp: ENSP00000363215.1:p.Gly44Asp
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly44Asp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-70339260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339260
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 37748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.91A>G
  hgvsp: ENSP00000399084.1:p.Asn31Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.137A>G
  hgvsp: ENSP00000363193.3:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.137A>G
  hgvsp: ENSP00000363215.1:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.137A>G
  hgvsp: ENSP00000333125.6:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
hgvs: p.Asn46Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-70339270-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339270
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339270
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 39307
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.101T>A
  hgvsp: ENST00000429213.1:c.101T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.147T>A
  hgvsp: ENST00000374080.3:c.147T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.147T>A
  hgvsp: ENST00000333646.6:c.147T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.147T>A
  hgvsp: ENST00000374102.1:c.147T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Pro49Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

X-70339291-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339291
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339291
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 39090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.168T>C
  hgvsp: ENST00000374102.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.168T>C
  hgvsp: ENST00000374080.3:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.168T>C
  hgvsp: ENST00000333646.6:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.122T>C
  hgvsp: ENST00000429213.1:c.122T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His56His
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

X-70339306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339306
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339306
    reference: chr 0
allele count: 4
allele frequency: 1.069404341781628e-4
allele num: 37404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.183C>T
  hgvsp: ENST00000374102.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.137C>T
  hgvsp: ENST00000429213.1:c.137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.183C>T
  hgvsp: ENST00000374080.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.183C>T
  hgvsp: ENST00000333646.6:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asn61Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-70339334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339334
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339334
    reference: chr 0
allele count: 2
allele frequency: 6.243171531137818e-5
allele num: 32035
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+7C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+7C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+7C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+7C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: c.204+7C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-70339336-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339336
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339334
    reference: chr 0
allele count: 100
allele frequency: 3.142875102143441e-3
allele num: 31818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+12_158+13delCT
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+12_204+13delCT
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+12_204+13delCT
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+12_204+13delCT
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: ACT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-70339347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339347
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339347
    reference: chr 0
allele count: 1
allele frequency: 3.550127804600966e-5
allele num: 28168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+20C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+20C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+20C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+20C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-70339350-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339350
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339350
    reference: chr 0
allele count: 1
allele frequency: 3.641527985142566e-5
allele num: 27461
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+23A>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+23A>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+23A>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+23A>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
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site quality: ReadPosRankSum

X-70339352-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339352
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339352
    reference: chr 0
allele count: 1
allele frequency: 3.873266713145867e-5
allele num: 25818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+25G>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+25G>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+25G>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+25G>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
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site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
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X-70339357-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339357
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339356
    reference: chr 0
allele count: 1
allele frequency: 3.911444887741532e-5
allele num: 25566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+32delG
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+32delG
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+32delG
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+32delG
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AG
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

X-70339358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339358
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339358
    reference: chr 0
allele count: 2
allele frequency: 7.804268935107504e-5
allele num: 25627
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+31G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+31G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+31G>A
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+31G>A
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3997
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23620
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

X-70339370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24070339370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24070339370
    reference: chr 0
allele count: 1
allele frequency: 4.18147606104955e-5
allele num: 23915
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363215
  ensembl transcript: ENST00000374102
  gene symbol: MED12
  hgvsc: ENST00000374102.1:c.204+43C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000333125
  ensembl transcript: ENST00000333646
  gene symbol: MED12
  hgvsc: ENST00000333646.6:c.204+43C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000399084
  ensembl transcript: ENST00000429213
  gene symbol: MED12
  hgvsc: ENST00000429213.1:c.158+43C>T
  variant of: http://identifiers.org/hgnc/11957
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184634
  ensembl protein: ENSP00000363193
  ensembl transcript: ENST00000374080
  gene symbol: MED12
  hgvsc: ENST00000374080.3:c.204+43C>T
  variant of: http://identifiers.org/hgnc/11957
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4803
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3505
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22796
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP

GenotypeQuality
all individuals: 4344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5289
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3668
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.300437083045779e-4
allele num: 4347
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3795
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 297
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.297e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

QD
type: SiteQuality
SIO_000300: 1.784e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 8.27888e5

GenotypeQuality
all individuals: 2204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.608922515001304e-4
allele num: 3833
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24783
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5343
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4349
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

QD
type: SiteQuality
SIO_000300: 1.734e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 8.42381e5

VQSLOD
type: SiteQuality
SIO_000300: -3.822e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3813
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4485
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2241
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5405
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: -2.737e0

DP
type: SiteQuality
SIO_000300: 8.50711e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.591e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.525e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

GenotypeQuality
all individuals: 5042
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4909
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.71540033438603e-5
allele num: 26915
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4271
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5677
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4082
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.105e0

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

DP
type: SiteQuality
SIO_000300: 9.03933e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3550
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1774
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2695
bin: 9.75e1
variant carriers: 15

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.023401787541789e-4
allele num: 29314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 8.745247148288974e-3
allele num: 2630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.047e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 9.64326e5

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 2.126e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7699
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7422
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.757160428747145e-4
allele num: 5691
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3571
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38779
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.563e-1

DP
type: SiteQuality
SIO_000300: 1.226147e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.752287038137104e-5
allele num: 42085
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6025
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7835
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.906e0

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e0

QD
type: SiteQuality
SIO_000300: 1.463e1

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

DP
type: SiteQuality
SIO_000300: 1.326821e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6129
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.335739144652325e-5
allele num: 42813
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7929
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8463
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3931
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.039e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.893e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -3.882e-1

DP
type: SiteQuality
SIO_000300: 1.34912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.352e0

QD
type: SiteQuality
SIO_000300: 1.368e1

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.165093790050099e-4
allele num: 8583
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 583
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4249
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8935
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6419
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

DP
type: SiteQuality
SIO_000300: 1.444333e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.065e0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 155
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variant carriers: 0

GenotypeQuality
all individuals: 4012
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variant carriers: 1

GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.031221582297666e-4
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8395
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9545
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9213
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.68851178792292e-4
allele num: 47379
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.942e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

QD
type: SiteQuality
SIO_000300: 1.792e1

DP
type: SiteQuality
SIO_000300: 1.524927e6

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4491
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9237
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 6.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.364e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.989e0

VQSLOD
type: SiteQuality
SIO_000300: -2.709e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.531343e6

FS
type: SiteQuality
SIO_000300: 1.3735e1

GenotypeQuality
all individuals: 4033
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 705
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 47720
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9663
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9239
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512630464377553e-4
allele num: 6611
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.208754208754209e-5
allele num: 47520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4493
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8417
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.249e0

DP
type: SiteQuality
SIO_000300: 1.533763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.239e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 2.271e1

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1180
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GenotypeQuality
all individuals: 716
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.063131834124201e-4
allele num: 9694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.187366421277606e-4
allele num: 8422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.207426107078994e-5
allele num: 47535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

FS
type: SiteQuality
SIO_000300: 3.944e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.992e-1

QD
type: SiteQuality
SIO_000300: 2.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

DP
type: SiteQuality
SIO_000300: 1.53622e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 2754
bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 4159
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 1210
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.181893393215932e-4
allele num: 8461
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9831
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.935441259723649e-4
allele num: 47693
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.54586e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.456e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.53e1

GenotypeQuality
all individuals: 4159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1209
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
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GenotypeQuality
all individuals: 2754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9265
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.363786786431864e-4
allele num: 8461
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47693
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9831
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.53e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 1.54586e6

FS
type: SiteQuality
SIO_000300: 1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.456e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

GenotypeQuality
all individuals: 48269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9849
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4509
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.095777009326208e-5
allele num: 47715
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e0

DP
type: SiteQuality
SIO_000300: 1.5479e6

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 1217
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 48433
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.095162270317836e-5
allele num: 47729
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

DP
type: SiteQuality
SIO_000300: 1.549075e6

VQSLOD
type: SiteQuality
SIO_000300: -1.332e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
all individuals: 662
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.093539337604153e-5
allele num: 47766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.078167115902965e-4
allele num: 9275
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4511
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.552012e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.352e-1

QD
type: SiteQuality
SIO_000300: 2.733e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 373
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GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9951
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9275
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09183139838929e-5
allele num: 47805
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.555765e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 6.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.787e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

QD
type: SiteQuality
SIO_000300: 2.892e1

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1242
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variant carriers: 0

GenotypeQuality
all individuals: 48699
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variant carriers: 0

GenotypeQuality
all individuals: 4280
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GenotypeQuality
all individuals: 106
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.09139391404371e-5
allele num: 47815
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9969
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

FS
type: SiteQuality
SIO_000300: 8.183999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

DP
type: SiteQuality
SIO_000300: 1.557521e6

MQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.194e0

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 307
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
all individuals: 266
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GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.115324559446799e-4
allele num: 8966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9421
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.819e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.439532e6

GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1155
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GenotypeQuality
all individuals: 2744
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.061458443901921e-4
allele num: 9421
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.819e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

DP
type: SiteQuality
SIO_000300: 1.439532e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2745
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variant carriers: 1

GenotypeQuality
all individuals: 1494
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8895
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.386061097831093e-5
allele num: 45599
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4217
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 601
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6343
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.482e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

QD
type: SiteQuality
SIO_000300: 3.051e1

DP
type: SiteQuality
SIO_000300: 1.413975e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.08084738434933e-4
allele num: 9252
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 45087
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8149
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.87e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.403e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

DP
type: SiteQuality
SIO_000300: 1.372734e6

GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8551
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 575
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.290740825582994e-5
allele num: 43654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4052
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 8963
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.259806e6

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.702127659574468e-4
allele num: 5875
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7875
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42591
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
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GenotypeQuality
all individuals: 10098
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.499375156210947e-5
allele num: 40010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7877
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8355
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 1.155934e6

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2424
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 3.300148506682801e-4
allele num: 18181
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2919
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4002
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1067
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
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QD
type: SiteQuality
SIO_000300: 1.723e1

South Asian
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allele frequency: 1.682935038707506e-4
allele num: 5942
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3004
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18778
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4063
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 259
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1103
num of homozygotes: 0

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 5.02e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 265
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19016
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 2
allele frequency: 6.611570247933885e-4
allele num: 3025
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1151
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.808e1

DP
type: SiteQuality
SIO_000300: 6.75101e5

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.541861540833633e-4
allele num: 19457
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4275
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1167
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.615e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3389
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23222
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 309
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6395
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.248e1

DP
type: SiteQuality
SIO_000300: 8.12673e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.343e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 309
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5485
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 23511
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.688172043010753e-4
allele num: 3720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6453
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.18308e5

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.709e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.873566780291292e-5
allele num: 25816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 337
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6115
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3913
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VQSLOD
type: SiteQuality
SIO_000300: -1.613e-1

DP
type: SiteQuality
SIO_000300: 8.72765e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

QD
type: SiteQuality
SIO_000300: 2.548e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7647
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 415
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.012320390396723e-5
allele num: 33197
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 5247
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.054769e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.34e1

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.259763164525069e-4
allele num: 7938
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 431
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34764
num of homozygotes: 0

African
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allele frequency: 1.822489520685256e-4
allele num: 5487
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
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allele num: 7904
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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FS
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele frequency: 1.202067556196658e-4
allele num: 8319
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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Other
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DP
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37899
num of homozygotes: 0

East Asian
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African
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allele frequency: 1.689760054072322e-4
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num of homozygotes: 0

South Asian
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Other
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allele num: 470
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQRankSum
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FS
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ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 6015
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.598955220001559e-5
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European (Finnish)
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East Asian
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Other
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South Asian
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Latino
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allele frequency: 1.181334908446545e-4
allele num: 8465
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 38526
num of homozygotes: 0

East Asian
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South Asian
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Latino
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African
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Other
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European (Finnish)
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -3.21e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8527
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 475
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.178550383028874e-4
allele num: 8485
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6035
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.192213e6

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

FS
type: SiteQuality
SIO_000300: 7.503e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.284e0

QD
type: SiteQuality
SIO_000300: 9.18e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5827
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38673
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3105
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 1.192894e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

MQ
type: SiteQuality
SIO_000300: 4.712e1

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8469
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3051
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5761
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.712e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 6.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.172897e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.232862375719518e-5
allele num: 38220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8423
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 465
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.493e-1

FS
type: SiteQuality
SIO_000300: 1.056e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 8.31e0

DP
type: SiteQuality
SIO_000300: 1.171093e6

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32420
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8391
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.66472448809722e-4
allele num: 6007
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5695
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.469e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

DP
type: SiteQuality
SIO_000300: 1.150656e6

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5401
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35935
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8079
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5757
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8041
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 453
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.053077e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.29e-1

QD
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 1.1532e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.201673271686482e-4
allele num: 4542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6905
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.252e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

DP
type: SiteQuality
SIO_000300: 7.54925e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.524477496211187e-5
allele num: 28373
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4101
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6989
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2127
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6668
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.424e0

MQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

DP
type: SiteQuality
SIO_000300: 7.46178e5

QD
type: SiteQuality
SIO_000300: 2.545e1

VQSLOD
type: SiteQuality
SIO_000300: -3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.479e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.539360081259522e-4
allele num: 3938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27063
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6737
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.21318e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

QD
type: SiteQuality
SIO_000300: 9.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27083
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 355
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3937
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 8.869179600886918e-4
allele num: 6765
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.2004e5

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 3.971e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -2.393e0

QD
type: SiteQuality
SIO_000300: 2.634e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1901
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.427773731488225e-4
allele num: 4119
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6513
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 343
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25497
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3711
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.016e0

QD
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 7.02341e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.965e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1755
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7299
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 881
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

DP
type: SiteQuality
SIO_000300: 3.96505e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.855e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 5

GenotypeQuality
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bin: 9.75e1
variant carriers: 152

GenotypeQuality
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bin: 9.25e1
variant carriers: 5

African
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allele count: 153
allele frequency: 8.504724847137299e-2
allele num: 1799
num of homozygotes: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 167
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.04749055585537e-4
allele num: 7412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

DP
type: SiteQuality
SIO_000300: 4.34907e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.094679514034353e-4
allele num: 4774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 655
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1899
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7793
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

QD
type: SiteQuality
SIO_000300: 1.927e1

DP
type: SiteQuality
SIO_000300: 4.71635e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-2

FS
type: SiteQuality
SIO_000300: 5.596e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.86e-1

GenotypeQuality
all individuals: 9745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4078
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 435
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1149
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 179
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4791
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.168e0

DP
type: SiteQuality
SIO_000300: 4.95513e5

QD
type: SiteQuality
SIO_000300: 1.983e1

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1021
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1317
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.722e0

DP
type: SiteQuality
SIO_000300: 5.63361e5

QD
type: SiteQuality
SIO_000300: 2.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21212
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4948
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.727975270479134e-4
allele num: 1294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 203
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2641
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.10548e5

FS
type: SiteQuality
SIO_000300: 1.566e0

VQSLOD
type: SiteQuality
SIO_000300: -4.252e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.938946992044337e-5
allele num: 11187
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1491
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5049
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 7.64e0

FS
type: SiteQuality
SIO_000300: 2.341e0

VQSLOD
type: SiteQuality
SIO_000300: -8.633999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 6.3584e5

GenotypeQuality
all individuals: 25792
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1645
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.572473708276177e-4
allele num: 2187
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5311
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 223
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.731e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

DP
type: SiteQuality
SIO_000300: 6.97018e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.034e1

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2333
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.858736059479554e-4
allele num: 5380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14263
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 7.11772e5

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 3.001e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1903
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17785
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4035
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.269629369401019e-4
allele num: 5693
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 269
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.491e0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 7.8799e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 2.885e1

GenotypeQuality
all individuals: 11857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 269
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.446782481037436e-4
allele num: 4087
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5719
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.164e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

QD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 7.93155e5

VQSLOD
type: SiteQuality
SIO_000300: -2.555e0

FS
type: SiteQuality
SIO_000300: 6.104e0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3305
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5769
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 2.339e1

DP
type: SiteQuality
SIO_000300: 8.05023e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19411
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -3.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQ
type: SiteQuality
SIO_000300: 5.796e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.589e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

DP
type: SiteQuality
SIO_000300: 8.20129e5

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1995
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5879
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19343
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3921
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.137e1

VQSLOD
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.99273e5

GenotypeQuality
all individuals: 2007
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3151
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5817
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.157962883038412e-4
allele num: 18536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.57398e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

QD
type: SiteQuality
SIO_000300: 2.154e1

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.272831413479285e-4
allele num: 15713
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3577
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1775
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

DP
type: SiteQuality
SIO_000300: 6.57581e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.991e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.485e0

QD
type: SiteQuality
SIO_000300: 1.271e1

GenotypeQuality
all individuals: 1467
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2103
bin: 9.75e1
variant carriers: 102

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 97
allele frequency: 2.674386545354287e-2
allele num: 3627
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.421782686873876e-5
allele num: 15572
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 7.704160246533128e-4
allele num: 2596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5519
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2483
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1757
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 2.07e1

DP
type: SiteQuality
SIO_000300: 6.5389e5

VQSLOD
type: SiteQuality
SIO_000300: 6.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 530
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.319036814755179e-5
allele num: 13663
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 235
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 6.534e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.515e0

DP
type: SiteQuality
SIO_000300: 6.15922e5

MQ
type: SiteQuality
SIO_000300: 5.868e1

QD
type: SiteQuality
SIO_000300: 1.265e1

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.142e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1629
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.524861878453039e-4
allele num: 1810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 233
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5313
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13270
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.07041e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 9.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.627e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1791
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1547
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.274394237066143e-4
allele num: 3054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.65e-2

FS
type: SiteQuality
SIO_000300: 1.715e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 5.9421e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 2598
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1751
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 227
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1484
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.919385796545106e-4
allele num: 5210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1547
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12323
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.69e-2

MQ
type: SiteQuality
SIO_000300: 5.996e1

QD
type: SiteQuality
SIO_000300: 3.365e1

DP
type: SiteQuality
SIO_000300: 5.90127e5

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 233
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1551
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1487
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1755
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.596306068601583e-4
allele num: 3032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12361
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.926e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.5e0

QD
type: SiteQuality
SIO_000300: 1.602e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 5.9007e5

GenotypeQuality
all individuals: 2023
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.963093835885355e-4
allele num: 5094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11505
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 5.75554e5