X-592607-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592607
    reference: chr 0
allele count: 1
allele frequency: 9.317927692881103e-5
allele num: 10732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+698T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+698T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+698T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+698T>C
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 254
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 626
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2251
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-592624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592624
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592624
    reference: chr 0
allele count: 1
allele frequency: 9.312721177127957e-5
allele num: 10738
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+715C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+715C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+715C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+715C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1032
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genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 448
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genotype quality: GenotypeQuality
  all individuals: 254
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genotype quality: GenotypeQuality
  all individuals: 411
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 259
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-592625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592625
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592625
    reference: chr 0
allele count: 1
allele frequency: 9.305788200260562e-5
allele num: 10746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+716G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+716G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+716G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+716G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 410
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-592636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592636
    reference: chr 0
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+727C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+727C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+727C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+727C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

X-592637-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592637
    reference: chr 0
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+728G>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+728G>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+728G>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+728G>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-592658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592658
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592658
    reference: chr 0
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+749G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+749G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+749G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+749G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
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X-592666-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592666
    reference: chr 0
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+757C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+757C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+757C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
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  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+757C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-592667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592667
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592667
    reference: chr 0
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+758C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+758C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+758C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+758C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-592692-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592692
    reference: chr 0
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+783C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+783C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+783C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+783C>G
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

X-592693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592693
    reference: chr 0
allele count: 10
allele frequency: 9.288500835965075e-4
allele num: 10766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+784G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+784G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+784G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+784G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

X-592706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592706
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592706
    reference: chr 0
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+797A>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+797A>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+797A>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+797A>G
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP

X-592714-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592714
    reference: chr 0
allele count: 2
allele frequency: 1.857700167193015e-4
allele num: 10766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+805G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+805G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+805G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+805G>C
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

X-592731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592731
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592731
    reference: chr 0
allele count: 12
allele frequency: 1.115656377835627e-3
allele num: 10756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+822C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+822C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+822C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+822C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
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genotype depth: GenotypeDepth
  all individuals: 1006
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 172
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-592738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592738
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592738
    reference: chr 0
allele count: 2
allele frequency: 1.859773107680863e-4
allele num: 10754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+829G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+829G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+829G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+829G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

X-592740-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592740
    reference: chr 0
allele count: 3
allele frequency: 2.789140944589066e-4
allele num: 10756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+831C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+831C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+831C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+831C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 364
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

X-592741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592741
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592741
    reference: chr 0
allele count: 1
allele frequency: 9.298865538404315e-5
allele num: 10754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+832C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+832C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+832C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+832C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-592746-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000592746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000592746
    reference: chr 0
allele count: 1
allele frequency: 9.300595238095238e-5
allele num: 10752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.277+837T>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.277+837T>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.277+837T>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.277+837T>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
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site quality: ClippingRankSum

X-595305-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595305
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595305
    reference: chr 0
allele count: 1
allele frequency: 9.434140266797487e-6
allele num: 105998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-48C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-48C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
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  hgvsc: ENST00000554971.1:c.278-48C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
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  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
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  hgvsc: ENST00000334060.3:c.278-48C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-595307-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595307
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595307
    reference: chr 0
allele count: 1
allele frequency: 9.412119044481674e-6
allele num: 106246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-46C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-46C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
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  hgvsc: ENST00000554971.1:c.278-46C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/10853
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
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site quality: ClippingRankSum
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X-595307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595307
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595307
    reference: chr 0
allele count: 12
allele frequency: 1.129454285337801e-4
allele num: 106246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-46C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-46C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
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  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/10853
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
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site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
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site quality: MQ
site quality: QD
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X-595313-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595313
    reference: chr 0
allele count: 1
allele frequency: 9.376113413467849e-6
allele num: 106654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-40C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
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  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000370990
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  hgvsc: ENST00000381578.1:c.278-40C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
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  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-40C>G
  variant of: http://identifiers.org/hgnc/10853
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-595313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595313
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595313
    reference: chr 0
allele count: 1
allele frequency: 9.376113413467849e-6
allele num: 106654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-40C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-40C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-40C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-40C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

X-595315-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595315
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595315
    reference: chr 0
allele count: 14
allele frequency: 1.311131506490101e-4
allele num: 106778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-38C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-38C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-38C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-38C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-595319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595319
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595319
    reference: chr 0
allele count: 81
allele frequency: 7.54695885509839e-4
allele num: 107328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-34G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-34G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-34G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-34G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 1
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
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site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
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X-595320-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595320
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595320
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 107562
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-33G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-33G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-33G>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-33G>C
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

X-595321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595321
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595321
    reference: chr 0
allele count: 31
allele frequency: 2.879007392548014e-4
allele num: 107676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-32C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-32C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-32C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-32C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

X-595326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595326
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595326
    reference: chr 0
allele count: 1
allele frequency: 9.185604320908273e-6
allele num: 108866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-27G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-27G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-27G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-27G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-595328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595328
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595328
    reference: chr 0
allele count: 3
allele frequency: 2.741077791787731e-5
allele num: 109446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-25C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-25C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-25C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-25C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

X-595329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595329
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595329
    reference: chr 0
allele count: 2
allele frequency: 1.824185045330998e-5
allele num: 109638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-24C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-24C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-24C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-24C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

X-595331-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595331
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595331
    reference: chr 0
allele count: 2
allele frequency: 1.81330238630594e-5
allele num: 110296
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-22G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-22G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-22G>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-22G>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

X-595335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595335
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595335
    reference: chr 0
allele count: 1
allele frequency: 8.962822213458574e-6
allele num: 111572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-18C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-18C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-18C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-18C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-595337-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595337
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595337
    reference: chr 0
allele count: 1
allele frequency: 8.912655971479501e-6
allele num: 112200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-16T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-16T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-16T>C
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-16T>C
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

X-595338-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595338
    reference: chr 0
allele count: 159
allele frequency: 1.414313924320862e-3
allele num: 112422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-15C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-15C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-15C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-15C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 2
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-595338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595338
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595338
    reference: chr 0
allele count: 1
allele frequency: 8.895056127804167e-6
allele num: 112422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-15C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-15C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-15C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-15C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

X-595343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595343
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595343
    reference: chr 0
allele count: 2
allele frequency: 1.749046769510617e-5
allele num: 114348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-10C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-10C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-10C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-10C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-595345-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595345
    reference: chr 0
allele count: 1
allele frequency: 8.702311333890281e-6
allele num: 114912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-8C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-8C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
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  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-8C>G
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
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  ensembl protein: ENSP00000452016
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  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-8C>G
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: c.278-8C>G
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

X-595345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595345
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595345
    reference: chr 0
allele count: 4
allele frequency: 3.480924533556112e-5
allele num: 114912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-8C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-8C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-8C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-8C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.278-8C>T
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-595348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595348
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595348
    reference: chr 0
allele count: 2
allele frequency: 1.729744689683803e-5
allele num: 115624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-5C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-5C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-5C>A
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-5C>A
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 33271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 5308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.75e1
  variant carriers: 0
hgvs: c.278-5C>A
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

X-595348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595348
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595348
    reference: chr 0
allele count: 1
allele frequency: 8.648723448419014e-6
allele num: 115624
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278-5C>T
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278-5C>T
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 15
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 949
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.75e1
  variant carriers: 0
hgvs: c.278-5C>T
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-595353-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595353
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595353
    reference: chr 0
allele count: 2
allele frequency: 1.710044803173843e-5
allele num: 116956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.278G>C
  hgvsp: ENSP00000452016.1:p.Gly93Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.278G>C
  hgvsp: ENSP00000335505.3:p.Gly93Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.278G>C
  hgvsp: ENSP00000370987.1:p.Gly93Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.278G>C
  hgvsp: ENSP00000370990.1:p.Gly93Ala
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly93Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-595354-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595354
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595354
    reference: chr 0
allele count: 2
allele frequency: 1.707358716066245e-5
allele num: 117140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.279G>T
  hgvsp: ENST00000334060.3:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.279G>T
  hgvsp: ENST00000381575.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.279G>T
  hgvsp: ENST00000381578.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.279G>T
  hgvsp: ENST00000554971.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
hgvs: c.279G>T
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum

X-595355-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595355
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595355
    reference: chr 0
allele count: 1
allele frequency: 8.523986498005388e-6
allele num: 117316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.280A>T
  hgvsp: ENSP00000335505.3:p.Ile94Phe
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.280A>T
  hgvsp: ENSP00000452016.1:p.Ile94Phe
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.280A>T
  hgvsp: ENSP00000370990.1:p.Ile94Phe
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.280A>T
  hgvsp: ENSP00000370987.1:p.Ile94Phe
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile94Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-595369-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595369
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595369
    reference: chr 0
allele count: 2
allele frequency: 1.687820685930327e-5
allele num: 118496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.294A>G
  hgvsp: ENST00000554971.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.294A>G
  hgvsp: ENST00000381578.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.294A>G
  hgvsp: ENST00000381575.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.294A>G
  hgvsp: ENST00000334060.3:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15434
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 569
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genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 1079
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 327
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genotype quality: GenotypeQuality
  all individuals: 1338
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys98Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-595370-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595370
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595370
    reference: chr 0
allele count: 4
allele frequency: 3.375071720274056e-5
allele num: 118516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.295G>C
  hgvsp: ENSP00000370990.1:p.Glu99Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.295G>C
  hgvsp: ENSP00000370987.1:p.Glu99Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.295G>C
  hgvsp: ENSP00000335505.3:p.Glu99Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.295G>C
  hgvsp: ENSP00000452016.1:p.Glu99Gln
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4551
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5560
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 949
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu99Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-595372-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595372
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595372
    reference: chr 0
allele count: 1
allele frequency: 8.431703204047217e-6
allele num: 118600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.297G>C
  hgvsp: ENSP00000335505.3:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.297G>C
  hgvsp: ENSP00000370990.1:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.297G>C
  hgvsp: ENSP00000370987.1:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.297G>C
  hgvsp: ENSP00000452016.1:p.Glu99Asp
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 946
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 62
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu99Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-595376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595376
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595376
    reference: chr 0
allele count: 2
allele frequency: 1.684465855877101e-5
allele num: 118732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.301C>T
  hgvsp: ENSP00000335505.3:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.301C>T
  hgvsp: ENSP00000452016.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.301C>T
  hgvsp: ENSP00000370987.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.301C>T
  hgvsp: ENSP00000370990.1:p.Arg101Cys
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1091
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg101Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

X-595377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595377
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595377
    reference: chr 0
allele count: 2
allele frequency: 1.683955274147919e-5
allele num: 118768
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.302G>A
  hgvsp: ENSP00000370990.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.302G>A
  hgvsp: ENSP00000370987.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.302G>A
  hgvsp: ENSP00000335505.3:p.Arg101His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.302G>A
  hgvsp: ENSP00000452016.1:p.Arg101His
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg101His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-595384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595384
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595384
    reference: chr 0
allele count: 2
allele frequency: 1.681209125603134e-5
allele num: 118962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.309C>G
  hgvsp: ENSP00000452016.1:p.Asp103Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.309C>G
  hgvsp: ENSP00000335505.3:p.Asp103Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.309C>G
  hgvsp: ENSP00000370990.1:p.Asp103Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.309C>G
  hgvsp: ENSP00000370987.1:p.Asp103Glu
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 867
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5586
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  variant carriers: 0
hgvs: p.Asp103Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

X-595387-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595387
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595387
    reference: chr 0
allele count: 1
allele frequency: 8.406328283932143e-6
allele num: 118958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.312G>T
  hgvsp: ENST00000554971.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.312G>T
  hgvsp: ENST00000381578.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.312G>T
  hgvsp: ENST00000334060.3:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.312G>T
  hgvsp: ENST00000381575.1:c.312G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1150
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  variant carriers: 0
hgvs: p.Val104Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-595400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595400
    reference: chr 0
allele count: 1
allele frequency: 8.413825598223e-6
allele num: 118852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.325G>A
  hgvsp: ENSP00000370987.1:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.325G>A
  hgvsp: ENSP00000452016.1:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.325G>A
  hgvsp: ENSP00000335505.3:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.325G>A
  hgvsp: ENSP00000370990.1:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 5571
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu109Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

X-595400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595400
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595400
    reference: chr 0
allele count: 3
allele frequency: 2.5241476794669e-5
allele num: 118852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.325G>C
  hgvsp: ENSP00000335505.3:p.Glu109Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.325G>C
  hgvsp: ENSP00000370990.1:p.Glu109Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.325G>C
  hgvsp: ENSP00000452016.1:p.Glu109Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.325G>C
  hgvsp: ENSP00000370987.1:p.Glu109Gln
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34793
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 246
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu109Gln
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-595402-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595402
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595402
    reference: chr 0
allele count: 1
allele frequency: 8.418925745074929e-6
allele num: 118780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.327G>T
  hgvsp: ENSP00000452016.1:p.Glu109Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.327G>T
  hgvsp: ENSP00000370987.1:p.Glu109Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.327G>T
  hgvsp: ENSP00000335505.3:p.Glu109Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.327G>T
  hgvsp: ENSP00000370990.1:p.Glu109Asp
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48592
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genotype quality: GenotypeQuality
  all individuals: 942
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  variant carriers: 1
hgvs: p.Glu109Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

X-595406-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595406
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595406
    reference: chr 0
allele count: 1
allele frequency: 8.430565859580495e-6
allele num: 118616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.331G>C
  hgvsp: ENSP00000452016.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.331G>C
  hgvsp: ENSP00000335505.3:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.331G>C
  hgvsp: ENSP00000370987.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.331G>C
  hgvsp: ENSP00000370990.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly111Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

X-595407-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595407
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595407
    reference: chr 0
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.332G>C
  hgvsp: ENSP00000370987.1:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.332G>C
  hgvsp: ENSP00000335505.3:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.332G>C
  hgvsp: ENSP00000452016.1:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.332G>C
  hgvsp: ENSP00000370990.1:p.Gly111Ala
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly111Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
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X-595410-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595410
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595410
    reference: chr 0
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.335A>C
  hgvsp: ENSP00000370990.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.335A>C
  hgvsp: ENSP00000452016.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.335A>C
  hgvsp: ENSP00000335505.3:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.335A>C
  hgvsp: ENSP00000370987.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48064
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln112Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

X-595411-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595411
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595411
    reference: chr 0
allele count: 2
allele frequency: 1.690188456012846e-5
allele num: 118330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.336G>C
  hgvsp: ENSP00000452016.1:p.Gln112His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.336G>C
  hgvsp: ENSP00000335505.3:p.Gln112His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.336G>C
  hgvsp: ENSP00000370987.1:p.Gln112His
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.336G>C
  hgvsp: ENSP00000370990.1:p.Gln112His
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gln112His
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-595412-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595412
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595412
    reference: chr 0
allele count: 1
allele frequency: 8.45394291897741e-6
allele num: 118288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.337A>G
  hgvsp: ENSP00000452016.1:p.Thr113Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.337A>G
  hgvsp: ENSP00000370987.1:p.Thr113Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.337A>G
  hgvsp: ENSP00000335505.3:p.Thr113Ala
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.337A>G
  hgvsp: ENSP00000370990.1:p.Thr113Ala
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 324
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hgvs: p.Thr113Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-595413-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595413
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595413
    reference: chr 0
allele count: 1
allele frequency: 8.453799983092399e-6
allele num: 118290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.338C>A
  hgvsp: ENSP00000452016.1:p.Thr113Asn
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.338C>A
  hgvsp: ENSP00000370990.1:p.Thr113Asn
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.338C>A
  hgvsp: ENSP00000370987.1:p.Thr113Asn
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.338C>A
  hgvsp: ENSP00000335505.3:p.Thr113Asn
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr113Asn
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-595422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595422
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595422
    reference: chr 0
allele count: 1
allele frequency: 8.521807304893222e-6
allele num: 117346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.347A>G
  hgvsp: ENSP00000370987.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.347A>G
  hgvsp: ENSP00000452016.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.347A>G
  hgvsp: ENSP00000335505.3:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.347A>G
  hgvsp: ENSP00000370990.1:p.Lys116Arg
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 158
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  variant carriers: 0
hgvs: p.Lys116Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-595428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595428
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595428
    reference: chr 0
allele count: 1
allele frequency: 8.593723144615173e-6
allele num: 116364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.353G>A
  hgvsp: ENSP00000370987.1:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.353G>A
  hgvsp: ENSP00000370990.1:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.353G>A
  hgvsp: ENSP00000335505.3:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.353G>A
  hgvsp: ENSP00000452016.1:p.Arg118Lys
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1077
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  variant carriers: 0
hgvs: p.Arg118Lys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

X-595428-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595428
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595428
    reference: chr 0
allele count: 1
allele frequency: 8.593723144615173e-6
allele num: 116364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.353G>C
  hgvsp: ENSP00000452016.1:p.Arg118Thr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.353G>C
  hgvsp: ENSP00000370987.1:p.Arg118Thr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.353G>C
  hgvsp: ENSP00000335505.3:p.Arg118Thr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.353G>C
  hgvsp: ENSP00000370990.1:p.Arg118Thr
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
hgvs: p.Arg118Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

X-595429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595429
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595429
    reference: chr 0
allele count: 1
allele frequency: 8.60141063134354e-6
allele num: 116260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.354G>A
  hgvsp: ENST00000334060.3:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.354G>A
  hgvsp: ENST00000381575.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.354G>A
  hgvsp: ENST00000381578.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.354G>A
  hgvsp: ENST00000554971.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 939
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hgvs: p.Arg118Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-595438-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595438
    reference: chr 0
allele count: 1
allele frequency: 8.728745504696065e-6
allele num: 114564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.363C>A
  hgvsp: ENST00000381575.1:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.363C>A
  hgvsp: ENST00000334060.3:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.363C>A
  hgvsp: ENST00000554971.1:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.363C>A
  hgvsp: ENST00000381578.1:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Arg121Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-595438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595438
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595438
    reference: chr 0
allele count: 1
allele frequency: 8.728745504696065e-6
allele num: 114564
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.363C>T
  hgvsp: ENST00000381578.1:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.363C>T
  hgvsp: ENST00000554971.1:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.363C>T
  hgvsp: ENST00000334060.3:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.363C>T
  hgvsp: ENST00000381575.1:c.363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Arg121Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

X-595440-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595440
    reference: chr 0
allele count: 1
allele frequency: 8.731489242805253e-6
allele num: 114528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.365C>G
  hgvsp: ENSP00000370987.1:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.365C>G
  hgvsp: ENSP00000335505.3:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.365C>G
  hgvsp: ENSP00000370990.1:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.365C>G
  hgvsp: ENSP00000452016.1:p.Thr122Ser
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Thr122Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-595441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595441
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595441
    reference: chr 0
allele count: 1
allele frequency: 8.765932081558232e-6
allele num: 114078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.366C>T
  hgvsp: ENST00000334060.3:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.366C>T
  hgvsp: ENST00000381578.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.366C>T
  hgvsp: ENST00000381575.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.366C>T
  hgvsp: ENST00000554971.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4505
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15616
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 628
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hgvs: p.Thr122Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-595465-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595465
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595465
    reference: chr 0
allele count: 3
allele frequency: 2.992220227408737e-5
allele num: 100260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.390C>G
  hgvsp: ENSP00000452016.1:p.Asn130Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.390C>G
  hgvsp: ENSP00000335505.3:p.Asn130Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.390C>G
  hgvsp: ENSP00000370990.1:p.Asn130Lys
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.390C>G
  hgvsp: ENSP00000370987.1:p.Asn130Lys
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9311
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 871
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hgvs: p.Asn130Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
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X-595468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595468
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595468
    reference: chr 0
allele count: 2
allele frequency: 1.997084256984802e-5
allele num: 100146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.393G>C
  hgvsp: ENSP00000370987.1:p.Glu131Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.393G>C
  hgvsp: ENSP00000335505.3:p.Glu131Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.393G>C
  hgvsp: ENSP00000452016.1:p.Glu131Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.393G>C
  hgvsp: ENSP00000370990.1:p.Glu131Asp
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4080
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu131Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

X-595471-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595471
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595471
    reference: chr 0
allele count: 2
allele frequency: 2.023513223658917e-5
allele num: 98838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.396C>G
  hgvsp: ENST00000554971.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.396C>G
  hgvsp: ENST00000381578.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.396C>G
  hgvsp: ENST00000381575.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.396C>G
  hgvsp: ENST00000334060.3:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Leu132Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

X-595472-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595472
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595472
    reference: chr 0
allele count: 1
allele frequency: 1.017045685692201e-5
allele num: 98324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.397G>C
  hgvsp: ENSP00000452016.1:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.397G>C
  hgvsp: ENSP00000370990.1:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.397G>C
  hgvsp: ENSP00000335505.3:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.397G>C
  hgvsp: ENSP00000370987.1:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu133Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-595475-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595475
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595475
    reference: chr 0
allele count: 259
allele frequency: 2.753737214791503e-3
allele num: 94054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.400C>A
  hgvsp: ENST00000554971.1:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.400C>A
  hgvsp: ENST00000381575.1:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.400C>A
  hgvsp: ENST00000381578.1:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.400C>A
  hgvsp: ENST00000334060.3:c.400C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1984
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  variant carriers: 0
hgvs: p.Arg134Arg
num of homozygotes: 4
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-595484-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595484
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595484
    reference: chr 0
allele count: 1
allele frequency: 1.113461752588799e-5
allele num: 89810
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.409G>T
  hgvsp: ENSP00000370990.1:p.Asp137Tyr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.409G>T
  hgvsp: ENSP00000452016.1:p.Asp137Tyr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.409G>T
  hgvsp: ENSP00000335505.3:p.Asp137Tyr
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.409G>T
  hgvsp: ENSP00000370987.1:p.Asp137Tyr
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21511
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp137Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-595486-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595486
    reference: chr 0
allele count: 3
allele frequency: 3.391823444283647e-5
allele num: 88448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.411C>G
  hgvsp: ENSP00000335505.3:p.Asp137Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.411C>G
  hgvsp: ENSP00000370987.1:p.Asp137Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.411C>G
  hgvsp: ENSP00000370990.1:p.Asp137Glu
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.411C>G
  hgvsp: ENSP00000452016.1:p.Asp137Glu
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9058
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 319
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  variant carriers: 0
hgvs: p.Asp137Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-595489-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595489
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595489
    reference: chr 0
allele count: 1
allele frequency: 1.159420289855072e-5
allele num: 86250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.414G>C
  hgvsp: ENSP00000370987.1:p.Glu138Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.414G>C
  hgvsp: ENSP00000452016.1:p.Glu138Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.414G>C
  hgvsp: ENSP00000335505.3:p.Glu138Asp
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.414G>C
  hgvsp: ENSP00000370990.1:p.Glu138Asp
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu138Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

X-595491-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000595491
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000595491
    reference: chr 0
allele count: 1
allele frequency: 1.187535626068782e-5
allele num: 84208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370987
  ensembl transcript: ENST00000381575
  gene symbol: SHOX
  hgvsc: ENST00000381575.1:c.416C>T
  hgvsp: ENSP00000370987.1:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000370990
  ensembl transcript: ENST00000381578
  gene symbol: SHOX
  hgvsc: ENST00000381578.1:c.416C>T
  hgvsp: ENSP00000370990.1:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000452016
  ensembl transcript: ENST00000554971
  gene symbol: SHOX
  hgvsc: ENST00000554971.1:c.416C>T
  hgvsp: ENSP00000452016.1:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/10853
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185960
  ensembl protein: ENSP00000335505
  ensembl transcript: ENST00000334060
  gene symbol: SHOX
  hgvsc: ENST00000334060.3:c.416C>T
  hgvsp: ENSP00000335505.3:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/10853
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9908
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr139Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.1183e5

VQSLOD
type: SiteQuality
SIO_000300: -6.072e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

GenotypeQuality
all individuals: 438
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.333688983728994e-4
allele num: 7498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 2.11972e5

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.333688983728994e-4
allele num: 7498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.665e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 2.11903e5

QD
type: SiteQuality
SIO_000300: 1.67e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.48e-1

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.08695652173913e-2
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.554e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

DP
type: SiteQuality
SIO_000300: 2.11889e5

QD
type: SiteQuality
SIO_000300: 1.046e1

FS
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.102e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.08695652173913e-2
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.912e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

FS
type: SiteQuality
SIO_000300: 2.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e0

DP
type: SiteQuality
SIO_000300: 2.1169e5

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332622601279318e-4
allele num: 7504
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.576e0

VQSLOD
type: SiteQuality
SIO_000300: -1.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 4.889e0

DP
type: SiteQuality
SIO_000300: 2.11678e5

QD
type: SiteQuality
SIO_000300: 1.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
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allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.559e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 2.11616e5

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

QD
type: SiteQuality
SIO_000300: 1.17e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332622601279318e-4
allele num: 7504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

VQSLOD
type: SiteQuality
SIO_000300: -1.106e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 2.802e0

QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
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South Asian
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allele frequency: 1.332622601279318e-4
allele num: 7504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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Latino
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allele frequency: 0.0e0
allele num: 92
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MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

Other
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East Asian
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South Asian
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allele frequency: 5.330490405117271e-4
allele num: 7504
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Latino
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allele frequency: 0.0e0
allele num: 92
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European (Non-Finnish)
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allele count: 6
allele frequency: 2.197802197802198e-3
allele num: 2730
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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African
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allele count: 0
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allele num: 190
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.665689149560117e-4
allele num: 2728
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 92
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South Asian
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allele frequency: 0.0e0
allele num: 7506
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European (Finnish)
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allele frequency: NaN
allele num: 0
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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VQSLOD
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SIO_000300: -3.078e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
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SIO_000300: 2.10875e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 92
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2728
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East Asian
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Other
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South Asian
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allele frequency: 2.664535038635758e-4
allele num: 7506
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African
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 8.474576271186441e-3
allele num: 118
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 1.102941176470588e-3
allele num: 2720
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Latino
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allele frequency: 1.08695652173913e-2
allele num: 92
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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South Asian
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allele count: 7
allele frequency: 9.328358208955224e-4
allele num: 7504
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MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 7.352941176470588e-4
allele num: 2720
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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allele frequency: 0.0e0
allele num: 118
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
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allele num: 132
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.1084e5

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 92
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
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African
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allele frequency: 1.030927835051546e-2
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South Asian
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allele frequency: 1.333333333333333e-4
allele num: 7500
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East Asian
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.988e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.676470588235294e-4
allele num: 2720
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
allele num: 118
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European (Finnish)
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allele frequency: NaN
allele num: 0
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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East Asian
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European (Non-Finnish)
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South Asian
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DP
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MQRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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MQ
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 59358
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African
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European (Finnish)
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Other
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East Asian
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South Asian
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Latino
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DP
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 1.853162168536676e-4
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Other
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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African
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Latino
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allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.281394156842645e-4
allele num: 7804
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.968e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

FS
type: SiteQuality
SIO_000300: 4.629e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.197166e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.466e1

GenotypeQuality
all individuals: 5455
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678810059429876e-5
allele num: 59566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 4.629e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.968e-1

DP
type: SiteQuality
SIO_000300: 1.197166e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.019367991845056e-4
allele num: 9810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.957713390759593e-4
allele num: 5108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.012342366514623e-4
allele num: 59632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.742e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.209534e6

GenotypeQuality
all individuals: 981
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 713
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 77
allele frequency: 9.798931025706286e-3
allele num: 7858
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59960
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.329787234042553e-3
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.010993430754793e-4
allele num: 14918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
type: SiteQuality
SIO_000300: 1.242615e6

QD
type: SiteQuality
SIO_000300: 1.39e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14930
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.2476e6

FS
type: SiteQuality
SIO_000300: 2.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.262e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 3.932014205986809e-3
allele num: 7884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.211e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.256281e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6310
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.642752756742394e-5
allele num: 15054
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

VQSLOD
type: SiteQuality
SIO_000300: -3.427e-1

DP
type: SiteQuality
SIO_000300: 1.299271e6

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.519e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.425e0

FS
type: SiteQuality
SIO_000300: 3.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 4447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.745318352059925e-4
allele num: 8010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15106
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

QD
type: SiteQuality
SIO_000300: 1.432e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.315913e6

FS
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3482
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.958480219349785e-4
allele num: 10212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 7.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

VQSLOD
type: SiteQuality
SIO_000300: -8.707e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.269e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.32363e6

GenotypeQuality
all individuals: 537
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.318391562294001e-4
allele num: 15170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.155e1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.788e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

FS
type: SiteQuality
SIO_000300: 3.117e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 1.340917e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 564
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5484
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.219512195121951e-4
allele num: 8200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.37246e6

FS
type: SiteQuality
SIO_000300: 1.168e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.249e0

GenotypeQuality
all individuals: 2062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599641680263621e-5
allele num: 62514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

QD
type: SiteQuality
SIO_000300: 7.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.812e-1

DP
type: SiteQuality
SIO_000300: 1.387834e6

GenotypeQuality
all individuals: 1038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.510416666666667e-5
allele num: 15360
num of homozygotes: 0

East Asian
type: Population
allele count: 155
allele frequency: 1.874244256348247e-2
allele num: 8270
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.790801660811242e-5
allele num: 62620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

DP
type: SiteQuality
SIO_000300: 1.396101e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.812e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.08695652173913e-4
allele num: 9200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.812e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.396101e6

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.379819133745835e-4
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.414e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.433195e6

GenotypeQuality
all individuals: 952
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.110787172011662e-5
allele num: 10976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.275e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 3.302e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.442765e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.392227051904884e-5
allele num: 15644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.134796238244514e-5
allele num: 63800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.219e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.275e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 3.302e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.24e-1

DP
type: SiteQuality
SIO_000300: 1.442765e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1112
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117595710188303e-5
allele num: 64152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 9.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.695e0

DP
type: SiteQuality
SIO_000300: 1.455018e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558797855094152e-5
allele num: 64152
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.455018e6

FS
type: SiteQuality
SIO_000300: 9.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.695e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
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variant carriers: 0

GenotypeQuality
all individuals: 1127
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780309773900659e-4
allele num: 11234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 1.167e0

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.237e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

DP
type: SiteQuality
SIO_000300: 1.476011e6

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 1070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088135383855228e-5
allele num: 64764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.4783e6

QD
type: SiteQuality
SIO_000300: 1.107e1

FS
type: SiteQuality
SIO_000300: 4.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.917e0

GenotypeQuality
all individuals: 47468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542590935735662e-5
allele num: 64826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.427e0

DP
type: SiteQuality
SIO_000300: 1.480847e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.417e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e0

QD
type: SiteQuality
SIO_000300: 1.252e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1156
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064100992768722e-5
allele num: 65272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

FS
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.496982e6

QD
type: SiteQuality
SIO_000300: 1.336e1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.128014216992984e-5
allele num: 65274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.765e0

FS
type: SiteQuality
SIO_000300: 2.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.497531e6

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530877805333578e-5
allele num: 65322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.733e0

MQ
type: SiteQuality
SIO_000300: 5.786e1

FS
type: SiteQuality
SIO_000300: 6.77e-1

DP
type: SiteQuality
SIO_000300: 1.498285e6

QD
type: SiteQuality
SIO_000300: 9.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.258e0

GenotypeQuality
all individuals: 946
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059975520195839e-5
allele num: 65360
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.500319e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 4.647e0

MQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65376
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.000200040008002e-4
allele num: 9998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.12e1

FS
type: SiteQuality
SIO_000300: 1.0331e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

DP
type: SiteQuality
SIO_000300: 1.500778e6

GenotypeQuality
all individuals: 214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.05548765582987e-5
allele num: 65456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.182e1

DP
type: SiteQuality
SIO_000300: 1.502906e6

GenotypeQuality
all individuals: 48728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527837193668643e-5
allele num: 65452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.502693e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 3.98e0

GenotypeQuality
all individuals: 1345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13195977434388e-5
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.502081e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

QD
type: SiteQuality
SIO_000300: 9.06e0

FS
type: SiteQuality
SIO_000300: 5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.586735161911751e-5
allele num: 65406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.502081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 9.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5573
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529894131326112e-5
allele num: 65364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.500821e6

QD
type: SiteQuality
SIO_000300: 1.376e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.76e-1

FS
type: SiteQuality
SIO_000300: 2.323e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531252871099133e-5
allele num: 65306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.389e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.115e1

DP
type: SiteQuality
SIO_000300: 1.498604e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.146281499692685e-5
allele num: 16270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.496608e6

VQSLOD
type: SiteQuality
SIO_000300: -4.401e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

FS
type: SiteQuality
SIO_000300: 4.931e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532942943863629e-5
allele num: 65234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.902e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.495123e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.595e1

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.014910336490026e-4
allele num: 9926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

DP
type: SiteQuality
SIO_000300: 1.493469e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534401276621862e-5
allele num: 65172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.55e-1

DP
type: SiteQuality
SIO_000300: 1.492454e6

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.165228113440197e-5
allele num: 16220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.546e0

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

DP
type: SiteQuality
SIO_000300: 1.492674e6

GenotypeQuality
all individuals: 5404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.873114463176575e-5
allele num: 11270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64810
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.476443e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.796e0

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

QD
type: SiteQuality
SIO_000300: 7.65e0

VQSLOD
type: SiteQuality
SIO_000300: -7.951e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5325
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.287726358148894e-5
allele num: 15904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.657e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.263e1

DP
type: SiteQuality
SIO_000300: 1.464286e6

GenotypeQuality
all individuals: 1042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.954154727793696e-5
allele num: 11168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.263e1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

FS
type: SiteQuality
SIO_000300: 1.657e0

DP
type: SiteQuality
SIO_000300: 1.464286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038853106170787e-4
allele num: 9626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

FS
type: SiteQuality
SIO_000300: 1.366e0

QD
type: SiteQuality
SIO_000300: 9.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.81e-1

DP
type: SiteQuality
SIO_000300: 1.462983e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 381
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.05797714769361e-4
allele num: 9452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.884e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.442547e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

QD
type: SiteQuality
SIO_000300: 1.061e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.402868485081316e-5
allele num: 15618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.061e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 2.884e0

DP
type: SiteQuality
SIO_000300: 1.442547e6

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573762236001385e-5
allele num: 63542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.442776e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.31e-1

QD
type: SiteQuality
SIO_000300: 1.71e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 1.715e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42621
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579878665318504e-5
allele num: 63296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.497e0

QD
type: SiteQuality
SIO_000300: 1.681e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.479e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.436527e6

VQSLOD
type: SiteQuality
SIO_000300: -1.699e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.349691501123435e-5
allele num: 56078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.250685e6

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 3.372e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.785650512481697e-5
allele num: 56002
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.006726457399103e-5
allele num: 14272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 884
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GenotypeQuality
all individuals: 947
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.616374945754376e-5
allele num: 55304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 6.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.502e1

DP
type: SiteQuality
SIO_000300: 1.23394e6

VQSLOD
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 881
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17423
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.817917393833624e-5
allele num: 55008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14138
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.226742e6

QD
type: SiteQuality
SIO_000300: 1.592e1

FS
type: SiteQuality
SIO_000300: 2.922e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
all individuals: 744
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

South Asian
type: Population
allele count: 256
allele frequency: 1.852924145917776e-2
allele num: 13816
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.468428781204112e-4
allele num: 6810
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.540650406504065e-4
allele num: 7872
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 1.883e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.190892e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.991159252917048e-5
allele num: 50222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.114389e6

VQSLOD
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 397
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.51653638003608e-5
allele num: 13304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.025357475594442e-5
allele num: 49374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.568381430363864e-4
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7152
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 1.096042e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.409e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.080213013812614e-5
allele num: 48072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 1.065438e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.222e1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0