17-46929828-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929828
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929828
    reference: chr 17
allele count: 1
allele frequency: 8.760863470703673e-6
allele num: 114144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.127T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-40T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-40T>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7847
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-46929835-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929835
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929835
    reference: chr 17
allele count: 1
allele frequency: 8.748294082653882e-6
allele num: 114308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.134A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-33A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-33A>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25690
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-46929838-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929838
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929838
    reference: chr 17
allele count: 1
allele frequency: 8.717483785480158e-6
allele num: 114712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.137T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-30T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-30T>A
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

17-46929842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929842
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929842
    reference: chr 17
allele count: 21
allele frequency: 1.824310236986587e-4
allele num: 115112
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.141G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-26G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-26G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10104
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28268
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-46929846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929846
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929846
    reference: chr 17
allele count: 3
allele frequency: 2.58875101392748e-5
allele num: 115886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-22A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.145A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-22A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-46929847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929847
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929847
    reference: chr 17
allele count: 2
allele frequency: 1.723513900139605e-5
allele num: 116042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.146T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-21T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-21T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

17-46929855-ATTTTTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929855
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929849
    reference: chr 17
allele count: 1
allele frequency: 8.525003836251726e-6
allele num: 117302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-8_148-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-8_577-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-8_533-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-8_423-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.159_164delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-8_487-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-8_703-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-8_27-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-8_775-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-8_766-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-8_487-3delTGTTTT
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.775-8_775-3delTGTTTT
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: ATTTTTG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

17-46929857-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929857
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929857
    reference: chr 17
allele count: 1
allele frequency: 8.502389171357152e-6
allele num: 117614
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.156T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-11T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-11T>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-46929859-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929859
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929859
    reference: chr 17
allele count: 46
allele frequency: 3.903134386613946e-4
allele num: 117854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.158T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-9T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-9T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32797
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36229
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-46929863-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929863
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929863
    reference: chr 17
allele count: 3091
allele frequency: 2.606019728522047e-2
allele num: 118610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.148-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.775-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.162T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.766-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.27-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.423-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.577-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.703-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.533-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.487-5T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.487-5T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 31765
  bin: 2.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11803
  bin: 2.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 9.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
hgvs: c.775-5T>C
num of homozygotes: 48
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

17-46929872-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929872
    reference: chr 17
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.707A>T
  hgvsp: ENSP00000258947.3:p.Gln236Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.152A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.537A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.581A>T
  hgvsp: ENSP00000406974.2:p.Gln194Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.779A>T
  hgvsp: ENSP00000398523.2:p.Gln260Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.491A>T
  hgvsp: ENSP00000425090.1:p.Gln164Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.171A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.31A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.770A>T
  hgvsp: ENSP00000424352.1:p.Gln257Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.491A>T
  hgvsp: ENSP00000423437.1:p.Gln164Leu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.427A>T
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13164
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln260Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

17-46929877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929877
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929877
    reference: chr 17
allele count: 1
allele frequency: 8.325840077263796e-6
allele num: 120108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.157T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.784T>C
  hgvsp: ENSP00000398523.2:p.Ser262Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.496T>C
  hgvsp: ENSP00000425090.1:p.Ser166Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.432T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.36T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.496T>C
  hgvsp: ENSP00000423437.1:p.Ser166Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.775T>C
  hgvsp: ENSP00000424352.1:p.Ser259Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.712T>C
  hgvsp: ENSP00000258947.3:p.Ser238Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.176T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.586T>C
  hgvsp: ENSP00000406974.2:p.Ser196Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.542T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser262Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-46929880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929880
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929880
    reference: chr 17
allele count: 1
allele frequency: 8.319329129299013e-6
allele num: 120202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.435A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.160A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.545A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.715A>G
  hgvsp: ENSP00000258947.3:p.Thr239Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.499A>G
  hgvsp: ENSP00000425090.1:p.Thr167Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.787A>G
  hgvsp: ENSP00000398523.2:p.Thr263Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.499A>G
  hgvsp: ENSP00000423437.1:p.Thr167Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.589A>G
  hgvsp: ENSP00000406974.2:p.Thr197Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.179A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.778A>G
  hgvsp: ENSP00000424352.1:p.Thr260Ala
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr263Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-46929881-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929881
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929881
    reference: chr 17
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.436C>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.500C>G
  hgvsp: ENSP00000425090.1:p.Thr167Ser
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.546C>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.716C>G
  hgvsp: ENSP00000258947.3:p.Thr239Ser
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.180C>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.779C>G
  hgvsp: ENSP00000424352.1:p.Thr260Ser
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.788C>G
  hgvsp: ENSP00000398523.2:p.Thr263Ser
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.161C>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.40C>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.500C>G
  hgvsp: ENSP00000423437.1:p.Thr167Ser
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.590C>G
  hgvsp: ENSP00000406974.2:p.Thr197Ser
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32513
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr263Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-46929884-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929884
    reference: chr 17
allele count: 2
allele frequency: 1.661874927292972e-5
allele num: 120346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.593A>C
  hgvsp: ENSP00000406974.2:p.Gln198Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.719A>C
  hgvsp: ENSP00000258947.3:p.Gln240Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.183A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.503A>C
  hgvsp: ENSP00000425090.1:p.Gln168Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.439A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.791A>C
  hgvsp: ENSP00000398523.2:p.Gln264Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.549A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.782A>C
  hgvsp: ENSP00000424352.1:p.Gln261Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.164A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.503A>C
  hgvsp: ENSP00000423437.1:p.Gln168Pro
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.43A>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln264Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-46929887-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929887
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929887
    reference: chr 17
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.442A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.506A>G
  hgvsp: ENSP00000423437.1:p.Glu169Gly
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.785A>G
  hgvsp: ENSP00000424352.1:p.Glu262Gly
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.722A>G
  hgvsp: ENSP00000258947.3:p.Glu241Gly
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.186A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.46A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.506A>G
  hgvsp: ENSP00000425090.1:p.Glu169Gly
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.794A>G
  hgvsp: ENSP00000398523.2:p.Glu265Gly
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.552A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.167A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.596A>G
  hgvsp: ENSP00000406974.2:p.Glu199Gly
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu265Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-46929896-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929897
    reference: chr 17
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.197dupG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.57dupG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.563dupG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.517dupG
  hgvsp: ENSP00000423437.1:p.Glu173GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.178dupG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.796dupG
  hgvsp: ENSP00000424352.1:p.Glu266GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.517dupG
  hgvsp: ENSP00000425090.1:p.Glu173GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.733dupG
  hgvsp: ENSP00000258947.3:p.Glu245GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.607dupG
  hgvsp: ENSP00000406974.2:p.Glu203GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.805dupG
  hgvsp: ENSP00000398523.2:p.Glu269GlyfsTer10
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.453dupG
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu269GlyfsTer10
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

17-46929898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929898
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929898
    reference: chr 17
allele count: 3
allele frequency: 2.486737400530504e-5
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.517G>A
  hgvsp: ENSP00000425090.1:p.Glu173Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.197G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.453G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.178G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.796G>A
  hgvsp: ENSP00000424352.1:p.Glu266Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.733G>A
  hgvsp: ENSP00000258947.3:p.Glu245Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.805G>A
  hgvsp: ENSP00000398523.2:p.Glu269Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.607G>A
  hgvsp: ENSP00000406974.2:p.Glu203Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.517G>A
  hgvsp: ENSP00000423437.1:p.Glu173Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.57G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.563G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu269Lys
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

17-46929906-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929906
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929906
    reference: chr 17
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.186T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.65T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.804T>G
  hgvsp: ENST00000509507.1:c.804T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.615T>G
  hgvsp: ENST00000416445.2:c.615T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.205T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.741T>G
  hgvsp: ENST00000258947.3:c.741T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.525T>G
  hgvsp: ENST00000508679.1:c.525T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.813T>G
  hgvsp: ENST00000448105.2:c.813T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.525T>G
  hgvsp: ENST00000513119.1:c.525T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.461T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.571T>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu271Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-46929907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929907
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929907
    reference: chr 17
allele count: 4
allele frequency: 3.311861431717697e-5
allele num: 120778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.462G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.187G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.66G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.526G>A
  hgvsp: ENSP00000425090.1:p.Val176Ile
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.572G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.742G>A
  hgvsp: ENSP00000258947.3:p.Val248Ile
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.616G>A
  hgvsp: ENSP00000406974.2:p.Val206Ile
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.526G>A
  hgvsp: ENSP00000423437.1:p.Val176Ile
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.814G>A
  hgvsp: ENSP00000398523.2:p.Val272Ile
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.206G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.805G>A
  hgvsp: ENSP00000424352.1:p.Val269Ile
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14183
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val272Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-46929908-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929908
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929908
    reference: chr 17
allele count: 9549
allele frequency: 7.902838698998593e-2
allele num: 120830
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.67T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.743T>C
  hgvsp: ENSP00000258947.3:p.Val248Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.207T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.527T>C
  hgvsp: ENSP00000425090.1:p.Val176Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.806T>C
  hgvsp: ENSP00000424352.1:p.Val269Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.815T>C
  hgvsp: ENSP00000398523.2:p.Val272Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.188T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.617T>C
  hgvsp: ENSP00000406974.2:p.Val206Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.527T>C
  hgvsp: ENSP00000423437.1:p.Val176Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.463T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.573T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.75e1
  variant carriers: 863
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.25e1
  variant carriers: 799
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 559
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 12884
  bin: 2.75e1
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 27681
  bin: 2.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 5.25e1
  variant carriers: 710
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 4.25e1
  variant carriers: 980
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.25e1
  variant carriers: 474
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 9.75e1
  variant carriers: 1237
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 6.75e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.25e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 3.75e1
  variant carriers: 936
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.25e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 233
genotype quality: GenotypeQuality
hgvs: p.Val272Ala
num of homozygotes: 710
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

17-46929928-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929928
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929928
    reference: chr 17
allele count: 12
allele frequency: 9.924244930364882e-5
allele num: 120916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.547A>G
  hgvsp: ENSP00000423437.1:p.Thr183Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.637A>G
  hgvsp: ENSP00000406974.2:p.Thr213Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.593A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.835A>G
  hgvsp: ENSP00000398523.2:p.Thr279Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.483A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.826A>G
  hgvsp: ENSP00000424352.1:p.Thr276Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.547A>G
  hgvsp: ENSP00000425090.1:p.Thr183Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.87A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.763A>G
  hgvsp: ENSP00000258947.3:p.Thr255Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.227A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.208A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28161
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16227
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr279Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-46929934-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929934
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929934
    reference: chr 17
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.599C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.553C>A
  hgvsp: ENSP00000425090.1:p.Gln185Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.643C>A
  hgvsp: ENSP00000406974.2:p.Gln215Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.769C>A
  hgvsp: ENSP00000258947.3:p.Gln257Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.841C>A
  hgvsp: ENSP00000398523.2:p.Gln281Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.233C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.832C>A
  hgvsp: ENSP00000424352.1:p.Gln278Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.553C>A
  hgvsp: ENSP00000423437.1:p.Gln185Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.214C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.93C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.489C>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln281Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

17-46929936-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929936
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929936
    reference: chr 17
allele count: 8
allele frequency: 6.618352692014958e-5
allele num: 120876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.601G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.771G>A
  hgvsp: ENST00000258947.3:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.555G>A
  hgvsp: ENST00000513119.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.95G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.555G>A
  hgvsp: ENST00000508679.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.235G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.843G>A
  hgvsp: ENST00000448105.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.491G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.645G>A
  hgvsp: ENST00000416445.2:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.834G>A
  hgvsp: ENST00000509507.1:c.834G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.216G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln281Gln
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-46929945-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929945
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929945
    reference: chr 17
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.564G>C
  hgvsp: ENSP00000425090.1:p.Gln188His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.852G>C
  hgvsp: ENSP00000398523.2:p.Gln284His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.654G>C
  hgvsp: ENSP00000406974.2:p.Gln218His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.610G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.780G>C
  hgvsp: ENSP00000258947.3:p.Gln260His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.225G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.244G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.564G>C
  hgvsp: ENSP00000423437.1:p.Gln188His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.843G>C
  hgvsp: ENSP00000424352.1:p.Gln281His
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.104G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.500G>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln284His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

17-46929965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929965
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929965
    reference: chr 17
allele count: 6
allele frequency: 4.965243296921549e-5
allele num: 120840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.584A>G
  hgvsp: ENSP00000423437.1:p.His195Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.800A>G
  hgvsp: ENSP00000258947.3:p.His267Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.584A>G
  hgvsp: ENSP00000425090.1:p.His195Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.863A>G
  hgvsp: ENSP00000424352.1:p.His288Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.630A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.264A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.872A>G
  hgvsp: ENSP00000398523.2:p.His291Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.245A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.674A>G
  hgvsp: ENSP00000406974.2:p.His225Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.520A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.124A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16520
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His291Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-46929982-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929982
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929982
    reference: chr 17
allele count: 299
allele frequency: 2.475165562913907e-3
allele num: 120800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.647A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.281A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.880A>G
  hgvsp: ENSP00000424352.1:p.Thr294Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.601A>G
  hgvsp: ENSP00000423437.1:p.Thr201Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.537A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.141A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.817A>G
  hgvsp: ENSP00000258947.3:p.Thr273Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.889A>G
  hgvsp: ENSP00000398523.2:p.Thr297Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.262A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.601A>G
  hgvsp: ENSP00000425090.1:p.Thr201Ala
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.691A>G
  hgvsp: ENSP00000406974.2:p.Thr231Ala
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 27427
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr297Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

17-46929985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929985
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929985
    reference: chr 17
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.604G>A
  hgvsp: ENSP00000425090.1:p.Glu202Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.883G>A
  hgvsp: ENSP00000424352.1:p.Glu295Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.650G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.892G>A
  hgvsp: ENSP00000398523.2:p.Glu298Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.694G>A
  hgvsp: ENSP00000406974.2:p.Glu232Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.604G>A
  hgvsp: ENSP00000423437.1:p.Glu202Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.265G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.820G>A
  hgvsp: ENSP00000258947.3:p.Glu274Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.540G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.144G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.284G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu298Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-46929996-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929996
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929996
    reference: chr 17
allele count: 14
allele frequency: 1.161363108471314e-4
allele num: 120548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.551G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+6G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.276G>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26875
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.897+6G>C
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-46929998-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46929998
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46929998
    reference: chr 17
allele count: 2
allele frequency: 1.659310390601666e-5
allele num: 120532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000511816
  gene symbol: CALCOCO2
  hgvsc: ENST00000511816.1:n.553C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+8C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.278C>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.897+8C>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-46930013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930013
    reference: chr 17
allele count: 3
allele frequency: 2.496338703235255e-5
allele num: 120176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.293C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+23C>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15756
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-46930030-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930030
    reference: chr 17
allele count: 1
allele frequency: 8.343206127250579e-6
allele num: 119858
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.310A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+40A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+40A>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

17-46930039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930039
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930039
    reference: chr 17
allele count: 1
allele frequency: 8.388980235562565e-6
allele num: 119204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.319T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+49T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+49T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-46930041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930041
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930041
    reference: chr 17
allele count: 9
allele frequency: 7.573717517167093e-5
allele num: 118832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.321C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+51C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+51C>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21291
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-46930042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930042
    reference: chr 17
allele count: 9
allele frequency: 7.600324280502635e-5
allele num: 118416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.655+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.289+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514006
  gene symbol: CALCOCO2
  hgvsc: ENST00000514006.1:n.322G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.149+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.897+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.699+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.609+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.888+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.825+52G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.609+52G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19851
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

17-46930241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930241
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930241
    reference: chr 17
allele count: 3
allele frequency: 2.590852563216803e-5
allele num: 115792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-47A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-47A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15048
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13855
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

17-46930242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930242
    reference: chr 17
allele count: 2
allele frequency: 1.707533638412677e-5
allele num: 117128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-46T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-46T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5253
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22735
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

17-46930251-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930251
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930251
    reference: chr 17
allele count: 1822
allele frequency: 1.549583262459602e-2
allele num: 117580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-37T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-37T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 3.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 1.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 1.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 2.25e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 2.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 28609
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 24
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

17-46930268-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930268
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930268
    reference: chr 17
allele count: 1
allele frequency: 8.39433214693439e-6
allele num: 119128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-20T>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-20T>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

17-46930269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930269
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930269
    reference: chr 17
allele count: 1
allele frequency: 8.390247176681825e-6
allele num: 119186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-19G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-19G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-46930271-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930271
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930271
    reference: chr 17
allele count: 1
allele frequency: 8.376612497905846e-6
allele num: 119380
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-17A>T
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

17-46930286-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930286
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930286
    reference: chr 17
allele count: 2
allele frequency: 1.661847309469206e-5
allele num: 120348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.150-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.610-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.898-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.656-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.889-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.610-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.700-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.826-2A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.290-2A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.25e1
  variant carriers: 0
hgvs: c.898-2A>G
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-46930299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930299
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930299
    reference: chr 17
allele count: 4
allele frequency: 3.314715680262525e-5
allele num: 120674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.161G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.837G>A
  hgvsp: ENST00000258947.3:c.837G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.301G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.667G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.711G>A
  hgvsp: ENST00000416445.2:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.909G>A
  hgvsp: ENST00000448105.2:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.900G>A
  hgvsp: ENST00000509507.1:c.900G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.621G>A
  hgvsp: ENST00000508679.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.621G>A
  hgvsp: ENST00000513119.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26046
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln303Gln
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-46930304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930304
    reference: chr 17
allele count: 2
allele frequency: 1.656012983141788e-5
allele num: 120772
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.306A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.166A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.626A>G
  hgvsp: ENSP00000423437.1:p.Lys209Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.716A>G
  hgvsp: ENSP00000406974.2:p.Lys239Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.914A>G
  hgvsp: ENSP00000398523.2:p.Lys305Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.905A>G
  hgvsp: ENSP00000424352.1:p.Lys302Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.842A>G
  hgvsp: ENSP00000258947.3:p.Lys281Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.626A>G
  hgvsp: ENSP00000425090.1:p.Lys209Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.672A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys305Arg
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

17-46930305-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930305
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930305
    reference: chr 17
allele count: 1
allele frequency: 8.279653579294243e-6
allele num: 120778
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.167G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.307G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.627G>C
  hgvsp: ENSP00000423437.1:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.906G>C
  hgvsp: ENSP00000424352.1:p.Lys302Asn
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.915G>C
  hgvsp: ENSP00000398523.2:p.Lys305Asn
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.627G>C
  hgvsp: ENSP00000425090.1:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.717G>C
  hgvsp: ENSP00000406974.2:p.Lys239Asn
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.673G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.843G>C
  hgvsp: ENSP00000258947.3:p.Lys281Asn
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys305Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-46930308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930308
    reference: chr 17
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.846C>T
  hgvsp: ENST00000258947.3:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.909C>T
  hgvsp: ENST00000509507.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.170C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.918C>T
  hgvsp: ENST00000448105.2:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.720C>T
  hgvsp: ENST00000416445.2:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.630C>T
  hgvsp: ENST00000513119.1:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.676C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.310C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.630C>T
  hgvsp: ENST00000508679.1:c.630C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu306Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

17-46930309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930309
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930309
    reference: chr 17
allele count: 3
allele frequency: 2.483032610494951e-5
allele num: 120820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.631G>A
  hgvsp: ENSP00000423437.1:p.Glu211Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.311G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.910G>A
  hgvsp: ENSP00000424352.1:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.631G>A
  hgvsp: ENSP00000425090.1:p.Glu211Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.919G>A
  hgvsp: ENSP00000398523.2:p.Glu307Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.847G>A
  hgvsp: ENSP00000258947.3:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.721G>A
  hgvsp: ENSP00000406974.2:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.677G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.171G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu307Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-46930309-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930309
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930309
    reference: chr 17
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.311G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.910G>C
  hgvsp: ENSP00000424352.1:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.919G>C
  hgvsp: ENSP00000398523.2:p.Glu307Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.631G>C
  hgvsp: ENSP00000425090.1:p.Glu211Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.631G>C
  hgvsp: ENSP00000423437.1:p.Glu211Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.721G>C
  hgvsp: ENSP00000406974.2:p.Glu241Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.171G>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.847G>C
  hgvsp: ENSP00000258947.3:p.Glu283Gln
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.677G>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu307Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-46930313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930313
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930313
    reference: chr 17
allele count: 2
allele frequency: 1.654506047219603e-5
allele num: 120882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.851A>G
  hgvsp: ENSP00000258947.3:p.Gln284Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.923A>G
  hgvsp: ENSP00000398523.2:p.Gln308Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.725A>G
  hgvsp: ENSP00000406974.2:p.Gln242Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.681A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.635A>G
  hgvsp: ENSP00000425090.1:p.Gln212Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.315A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.914A>G
  hgvsp: ENSP00000424352.1:p.Gln305Arg
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.175A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.635A>G
  hgvsp: ENSP00000423437.1:p.Gln212Arg
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5125
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gln308Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-46930321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930321
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930321
    reference: chr 17
allele count: 4
allele frequency: 3.308355251186872e-5
allele num: 120906
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.931G>A
  hgvsp: ENSP00000398523.2:p.Glu311Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.323G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.733G>A
  hgvsp: ENSP00000406974.2:p.Glu245Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.643G>A
  hgvsp: ENSP00000423437.1:p.Glu215Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.859G>A
  hgvsp: ENSP00000258947.3:p.Glu287Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.689G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.643G>A
  hgvsp: ENSP00000425090.1:p.Glu215Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.922G>A
  hgvsp: ENSP00000424352.1:p.Glu308Lys
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.183G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu311Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS

17-46930362-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930362
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930362
    reference: chr 17
allele count: 2
allele frequency: 1.663118680149015e-5
allele num: 120256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.900A>G
  hgvsp: ENST00000258947.3:c.900A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.224A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.730A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.774A>G
  hgvsp: ENST00000416445.2:c.774A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.684A>G
  hgvsp: ENST00000513119.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.684A>G
  hgvsp: ENST00000508679.1:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.972A>G
  hgvsp: ENST00000448105.2:c.972A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.963A>G
  hgvsp: ENST00000509507.1:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.364A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.40A>G
  hgvsp: ENST00000507306.1:c.40A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln324Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-46930373-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930373
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930373
    reference: chr 17
allele count: 2
allele frequency: 1.6703135178473e-5
allele num: 119738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.741T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.695T>C
  hgvsp: ENSP00000425090.1:p.Met232Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.911T>C
  hgvsp: ENSP00000258947.3:p.Met304Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.785T>C
  hgvsp: ENSP00000406974.2:p.Met262Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.235T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.983T>C
  hgvsp: ENSP00000398523.2:p.Met328Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.974T>C
  hgvsp: ENSP00000424352.1:p.Met325Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.375T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.695T>C
  hgvsp: ENSP00000423437.1:p.Met232Thr
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.51T>C
  hgvsp: ENSP00000424083.1:p.Met18Thr
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met328Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

17-46930391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930391
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930391
    reference: chr 17
allele count: 1
allele frequency: 8.441383036196651e-6
allele num: 118464
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.984+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.786+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.253A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.376+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.912+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.759A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.696+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.975+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.52+17A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.696+17A>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

17-46930392-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930392
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930391
    reference: chr 17
allele count: 1
allele frequency: 8.450370971285639e-6
allele num: 118338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.256delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.912+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.975+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.762delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.696+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.696+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.376+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.52+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.786+20delG
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.984+20delG
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: TG
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-46930397-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930397
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930397
    reference: chr 17
allele count: 219
allele frequency: 1.856561546286877e-3
allele num: 117960
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.912+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.786+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.259A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.696+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.52+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.376+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.696+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.984+23A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000514962
  gene symbol: CALCOCO2
  hgvsc: ENST00000514962.1:n.765A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.975+23A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17241
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17988
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

17-46930401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930401
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930401
    reference: chr 17
allele count: 3
allele frequency: 2.554234921499847e-5
allele num: 117452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.696+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.696+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.376+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.975+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.984+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.786+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.263G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.912+27G>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.52+27G>A
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-46930411-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46930411
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46930411
    reference: chr 17
allele count: 43
allele frequency: 3.710927386644113e-4
allele num: 115874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.975+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.696+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000509112
  gene symbol: CALCOCO2
  hgvsc: ENST00000509112.1:n.273C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.984+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.696+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.52+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.786+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.912+37C>A
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.376+37C>A
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10684
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 5450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

17-46933411-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933411
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933411
    reference: chr 17
allele count: 2
allele frequency: 2.334430515675701e-5
allele num: 85674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-43T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.247T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-43T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20844
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7023
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-46933415-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933415
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933415
    reference: chr 17
allele count: 1
allele frequency: 1.158909697756351e-5
allele num: 86288
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.251A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-39A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-39A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9872
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

17-46933417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933417
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933417
    reference: chr 17
allele count: 1
allele frequency: 1.154174649707994e-5
allele num: 86642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.253A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-37A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-37A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5660
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-46933428-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933428
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933428
    reference: chr 17
allele count: 2
allele frequency: 2.193415367068062e-5
allele num: 91182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.264A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-26A>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-26A>C
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

17-46933431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933431
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933431
    reference: chr 17
allele count: 1
allele frequency: 1.070159667822439e-5
allele num: 93444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.267C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-23C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-23C>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13826
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-46933434-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933435
    reference: chr 17
allele count: 21
allele frequency: 2.240908314836947e-4
allele num: 93712
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.278dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-12dupT
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-12dupT
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26596
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12077
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-46933434-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933434
    reference: chr 17
allele count: 3
allele frequency: 3.201297592624211e-5
allele num: 93712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.270A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-20A>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-20A>T
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26596
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5966
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

17-46933437-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933437
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933437
    reference: chr 17
allele count: 4
allele frequency: 4.0230116265036e-5
allele num: 99428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.273T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-17T>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-17T>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

17-46933443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933443
    reference: chr 17
allele count: 2
allele frequency: 1.917913310318374e-5
allele num: 104280
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.279A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-11A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-11A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

17-46933447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933447
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933447
    reference: chr 17
allele count: 1
allele frequency: 9.221519337526051e-6
allele num: 108442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.283T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-7T>C
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-7T>C
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
hgvs: c.985-7T>C
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

17-46933451-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933451
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933451
    reference: chr 17
allele count: 1
allele frequency: 8.932080460180785e-6
allele num: 111956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.697-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.287C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.53-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.697-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.976-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.377-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.985-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.913-3C>T
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.787-3C>T
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
hgvs: c.985-3C>T
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-46933475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46933475
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46933475
    reference: chr 17
allele count: 1
allele frequency: 8.369601606963508e-6
allele num: 119480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000258947
  ensembl transcript: ENST00000258947
  gene symbol: CALCOCO2
  hgvsc: ENST00000258947.3:c.934A>G
  hgvsp: ENSP00000258947.3:p.Lys312Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424352
  ensembl transcript: ENST00000509507
  gene symbol: CALCOCO2
  hgvsc: ENST00000509507.1:c.997A>G
  hgvsp: ENSP00000424352.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000424083
  ensembl transcript: ENST00000507306
  gene symbol: CALCOCO2
  hgvsc: ENST00000507306.1:c.74A>G
  hgvsp: ENSP00000424083.1:p.Lys26Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000406974
  ensembl transcript: ENST00000416445
  gene symbol: CALCOCO2
  hgvsc: ENST00000416445.2:c.808A>G
  hgvsp: ENSP00000406974.2:p.Lys270Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000398523
  ensembl transcript: ENST00000448105
  gene symbol: CALCOCO2
  hgvsc: ENST00000448105.2:c.1006A>G
  hgvsp: ENSP00000398523.2:p.Lys336Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000429963
  ensembl transcript: ENST00000509784
  gene symbol: CALCOCO2
  hgvsc: ENST00000509784.1:c.13A>G
  hgvsp: ENSP00000429963.1:p.Lys5Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000425090
  ensembl transcript: ENST00000513119
  gene symbol: CALCOCO2
  hgvsc: ENST00000513119.1:c.718A>G
  hgvsp: ENSP00000425090.1:p.Lys240Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000506971
  gene symbol: CALCOCO2
  hgvsc: ENST00000506971.1:n.398A>G
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000136436
  ensembl protein: ENSP00000423437
  ensembl transcript: ENST00000508679
  gene symbol: CALCOCO2
  hgvsc: ENST00000508679.1:c.718A>G
  hgvsp: ENSP00000423437.1:p.Lys240Glu
  variant of: http://identifiers.org/hgnc/29912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136436
  ensembl transcript: ENST00000575461
  gene symbol: CALCOCO2
  hgvsc: ENST00000575461.1:n.311A>G
  variant of: http://identifiers.org/hgnc/29912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys336Glu
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2398
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6166
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62144
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.149130832570906e-5
allele num: 10930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.543e-1

QD
type: SiteQuality
SIO_000300: 9.24e0

DP
type: SiteQuality
SIO_000300: 1.532496e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1351
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3706
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6151
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6061676839062e-5
allele num: 62260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.967e0

VQSLOD
type: SiteQuality
SIO_000300: -3.434e0

DP
type: SiteQuality
SIO_000300: 1.578304e6

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

QD
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.89e-1

GenotypeQuality
all individuals: 1694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6176
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600153614747016e-5
allele num: 62494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.599665e6

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 1.837e0

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1933
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5171
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6192
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 2189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30517
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.187860626733399e-5
allele num: 62738
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.920744035584311e-3
allele num: 9892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 4.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.73e0

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.627637e6

GenotypeQuality
all individuals: 550
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.745183638606814e-5
allele num: 63222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.649931e6

FS
type: SiteQuality
SIO_000300: 1.539e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
all individuals: 410
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.158659464923087e-5
allele num: 63318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.438e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

FS
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.655155e6

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeDepth
all individuals: 11442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

FS
type: SiteQuality
SIO_000300: 3.905e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 5.073e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.692408e6

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 1677
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 2408
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 6202
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variant carriers: 1

GenotypeQuality
all individuals: 35867
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variant carriers: 0

GenotypeQuality
all individuals: 1929
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variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.982032341784787e-5
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.97e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

FS
type: SiteQuality
SIO_000300: 6.854e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

DP
type: SiteQuality
SIO_000300: 1.698514e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1914
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variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 274
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 5865
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 570
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GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 2399
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variant carriers: 0

GenotypeQuality
all individuals: 639
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variant carriers: 0

GenotypeQuality
all individuals: 1942
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GenotypeQuality
all individuals: 6242
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.558300395256917e-4
allele num: 16192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.964472990164137e-4
allele num: 64458
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.080875646093037e-4
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

DP
type: SiteQuality
SIO_000300: 1.703923e6

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.517e1

GenotypeDepth
all individuals: 152
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variant carriers: 32

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 2

GenotypeQuality
all individuals: 8817
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variant carriers: 3017

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 1806
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 2244
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GenotypeQuality
all individuals: 1559
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 336
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 424
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variant carriers: 1

GenotypeQuality
all individuals: 898
bin: 9.25e1
variant carriers: 5

African
type: Population
allele count: 94
allele frequency: 9.321697738992463e-3
allele num: 10084
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 141
allele frequency: 2.141555285540705e-2
allele num: 6584
num of homozygotes: 2

South Asian
type: Population
allele count: 567
allele frequency: 3.487942913385827e-2
allele num: 16256
num of homozygotes: 14

East Asian
type: Population
allele count: 22
allele frequency: 2.607871028923661e-3
allele num: 8436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1935
allele frequency: 2.978022654518591e-2
allele num: 64976
num of homozygotes: 26

Latino
type: Population
allele count: 316
allele frequency: 2.776801405975396e-2
allele num: 11380
num of homozygotes: 5

Other
type: Population
allele count: 16
allele frequency: 1.789709172259508e-2
allele num: 894
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.478e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.772819e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 6242
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GenotypeQuality
all individuals: 668
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GenotypeQuality
all individuals: 986
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GenotypeQuality
all individuals: 38101
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GenotypeQuality
all individuals: 1714
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.552e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.55e0

BaseQRankSum
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SIO_000300: -2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.74985e6

VQSLOD
type: SiteQuality
SIO_000300: -1.503e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 1725
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GenotypeQuality
all individuals: 6243
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 665
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GenotypeQuality
all individuals: 38236
bin: 6.25e1
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GenotypeQuality
all individuals: 2088
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

VQSLOD
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InbreedingCoeff
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SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 1.756041e6

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
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SIO_000300: 7.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 1.758217e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
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SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.767532721234616e-5
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 9.582000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.194e1

DP
type: SiteQuality
SIO_000300: 1.759079e6

BaseQRankSum
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SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026359592046727e-5
allele num: 66086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.431e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.760921e6

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.76279e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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QD
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SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 5.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

South Asian
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allele frequency: 1.824817518248175e-4
allele num: 16440
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10308
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11522
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Other
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66332
num of homozygotes: 0

Other
type: Population
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 2122
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.029544769369913e-5
allele num: 66340
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 1.769754e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.591e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 9.044e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 376
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5530
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
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GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 154
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variant carriers: 7

GenotypeQuality
all individuals: 139
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variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 13553
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variant carriers: 8733

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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bin: 4.75e1
variant carriers: 7

GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 23

GenotypeQuality
all individuals: 33862
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1703
bin: 7.25e1
variant carriers: 6

Other
type: Population
allele count: 65
allele frequency: 7.190265486725664e-2
allele num: 904
num of homozygotes: 2

South Asian
type: Population
allele count: 2403
allele frequency: 1.459016393442623e-1
allele num: 16470
num of homozygotes: 204

Latino
type: Population
allele count: 736
allele frequency: 6.391108023619312e-2
allele num: 11516
num of homozygotes: 22

East Asian
type: Population
allele count: 399
allele frequency: 4.627696590118302e-2
allele num: 8622
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 2623
allele frequency: 3.953158910055462e-2
allele num: 66352
num of homozygotes: 57

African
type: Population
allele count: 2933
allele frequency: 2.829442407871889e-1
allele num: 10366
num of homozygotes: 403

European (Finnish)
type: Population
allele count: 390
allele frequency: 5.909090909090909e-2
allele num: 6600
num of homozygotes: 11

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 2.042907e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 1.549e1

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 6.92e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 2197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 181
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 983
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GenotypeQuality
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GenotypeQuality
all individuals: 431
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
all individuals: 2518
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variant carriers: 0

GenotypeQuality
all individuals: 5961
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variant carriers: 12

GenotypeQuality
all individuals: 6968
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GenotypeQuality
all individuals: 1718
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variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.807174482696304e-4
allele num: 66402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 1.473e1

DP
type: SiteQuality
SIO_000300: 1.793899e6

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 981
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variant carriers: 0

GenotypeQuality
all individuals: 504
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GenotypeQuality
all individuals: 1708
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 156
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GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
all individuals: 493
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 2152
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variant carriers: 0

GenotypeQuality
all individuals: 6747
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variant carriers: 0

GenotypeQuality
all individuals: 5948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37463
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.793429e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 6762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
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variant carriers: 0

GenotypeQuality
all individuals: 5954
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1709
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GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 2479
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GenotypeQuality
all individuals: 643
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GenotypeQuality
all individuals: 37837
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variant carriers: 0

GenotypeQuality
all individuals: 980
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variant carriers: 0

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214919207872676e-4
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.533978241870837e-5
allele num: 66366
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.566e0

FS
type: SiteQuality
SIO_000300: 1.092e0

DP
type: SiteQuality
SIO_000300: 1.793869e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
all individuals: 981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 369
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GenotypeQuality
all individuals: 6717
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GenotypeQuality
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GenotypeQuality
all individuals: 502
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 5945
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variant carriers: 1

GenotypeQuality
all individuals: 1712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
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SIO_000300: -1.661e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.988e0

QD
type: SiteQuality
SIO_000300: 2.897e1

DP
type: SiteQuality
SIO_000300: 1.792308e6

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1707
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GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.522158577027435e-5
allele num: 66340
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

DP
type: SiteQuality
SIO_000300: 1.792851e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 192
bin: 3.75e1
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 6183
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variant carriers: 299

GenotypeQuality
all individuals: 237
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GenotypeQuality
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GenotypeQuality
all individuals: 681
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 38127
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GenotypeQuality
all individuals: 1683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 27
allele frequency: 2.338877338877339e-3
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.292173067574137e-4
allele num: 16456
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 239
allele frequency: 3.604935292165676e-3
allele num: 66298
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.15718418514947e-3
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.059642749016046e-3
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.797708e6

QD
type: SiteQuality
SIO_000300: 1.436e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37976
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.789561e6

FS
type: SiteQuality
SIO_000300: 6.185e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

GenotypeDepth
all individuals: 327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.525149190110827e-4
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 1.782019e6

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeDepth
all individuals: 130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6542
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 969
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023705853894533e-5
allele num: 66144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.78025e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
all individuals: 2335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5915
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6230
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.549590536851683e-5
allele num: 65940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.564e0

QD
type: SiteQuality
SIO_000300: 4.1e0

DP
type: SiteQuality
SIO_000300: 1.748671e6

FS
type: SiteQuality
SIO_000300: 9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.387e0

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.914e0

GenotypeQuality
all individuals: 3444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 5501
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520912547528517e-5
allele num: 65750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 1.792e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.388e1

DP
type: SiteQuality
SIO_000300: 1.682409e6

GenotypeQuality
all individuals: 5911
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5035
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
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variant carriers: 0

GenotypeQuality
all individuals: 17148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
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GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529192280637367e-5
allele num: 65394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.446e0

VQSLOD
type: SiteQuality
SIO_000300: -7.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 7.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 1.6668e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

GenotypeQuality
all individuals: 171
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3558
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variant carriers: 0

GenotypeQuality
all individuals: 1878
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variant carriers: 0

GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 1579
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GenotypeQuality
all individuals: 3921
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 2157
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GenotypeQuality
all individuals: 4826
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GenotypeQuality
all individuals: 16189
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GenotypeQuality
all individuals: 387
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GenotypeQuality
all individuals: 4911
bin: 3.75e1
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GenotypeQuality
all individuals: 599
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GenotypeQuality
all individuals: 1660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.209637357178341e-5
allele num: 16104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.227257386555395e-4
allele num: 65186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 1.669e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5916
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5960
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64926
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.456264775413711e-4
allele num: 8460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.348e-1

FS
type: SiteQuality
SIO_000300: 9.420999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

DP
type: SiteQuality
SIO_000300: 1.678484e6

GenotypeQuality
all individuals: 2275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.739186755552747e-5
allele num: 63302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.43e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.143e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

DP
type: SiteQuality
SIO_000300: 1.567036e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
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GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562255897516013e-5
allele num: 64010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.56836e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
all individuals: 2206
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6698
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variant carriers: 1773

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 6

GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 855
bin: 5.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 1404
allele frequency: 2.185145987673535e-2
allele num: 64252
num of homozygotes: 17

Other
type: Population
allele count: 12
allele frequency: 1.357466063348416e-2
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 4.575853572685674e-3
allele num: 11364
num of homozygotes: 0

South Asian
type: Population
allele count: 162
allele frequency: 1.005461767626614e-2
allele num: 16112
num of homozygotes: 3

African
type: Population
allele count: 43
allele frequency: 4.242304656669298e-3
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 149
allele frequency: 2.285977293648359e-2
allele num: 6518
num of homozygotes: 4

QD
type: SiteQuality
SIO_000300: 1.565e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 1.613964e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1343
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GenotypeQuality
all individuals: 227
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.588e0

DP
type: SiteQuality
SIO_000300: 1.681394e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.494e0

QD
type: SiteQuality
SIO_000300: 1.491e1

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
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variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 1936
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GenotypeQuality
all individuals: 223
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1430
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GenotypeQuality
all individuals: 803
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534071733194244e-5
allele num: 65186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.693e0

DP
type: SiteQuality
SIO_000300: 1.684857e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.173e0

QD
type: SiteQuality
SIO_000300: 2.25e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 1434
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 689
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variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.139489194499017e-5
allele num: 16288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.688714e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.03e0

FS
type: SiteQuality
SIO_000300: 1.6988e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.083e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1974
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GenotypeQuality
all individuals: 40313
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.609e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.44e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
all individuals: 6632
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variant carriers: 0

GenotypeQuality
all individuals: 97
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 153
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GenotypeQuality
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GenotypeQuality
all individuals: 5127
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GenotypeQuality
all individuals: 2169
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 40561
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.630701551285019e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 4.252e0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.717203e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020144362900547e-5
allele num: 66222
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.879e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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MQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.411e0

DP
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SIO_000300: 1.718852e6

MQRankSum
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MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.604e0

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.225e1

BaseQRankSum
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SIO_000300: -2.557e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.243e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.76e0

DP
type: SiteQuality
SIO_000300: 1.719999e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.527755139002083e-5
allele num: 66258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 1.045e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.041e1

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

DP
type: SiteQuality
SIO_000300: 1.720405e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.016045361322234e-5
allele num: 66312
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.030453791647822e-5
allele num: 66330
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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South Asian
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Other
type: Population
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 1.779e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.419999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

DP
type: SiteQuality
SIO_000300: 1.70917e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050919852335479e-5
allele num: 65554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.267e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.696477e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.603e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.188495364868077e-4
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.648636e6

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.596e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.191327138432213e-4
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-2

QD
type: SiteQuality
SIO_000300: 1.396e1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

DP
type: SiteQuality
SIO_000300: 1.639863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.80126738250308e-5
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 158
allele frequency: 2.447714949651433e-3
allele num: 64550
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 56
allele frequency: 8.528784648187633e-3
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.378378378378379e-3
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.22975330176925e-5
allele num: 16052
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

FS
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
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SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 1.620378e6

QD
type: SiteQuality
SIO_000300: 1.444e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.669260700389105e-5
allele num: 64250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 2.937e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.589862e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63388
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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allele count: 43
allele frequency: 5.334987593052109e-3
allele num: 8060
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.439e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.49282e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.13633355393779e-5
allele num: 48352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 9.24351e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 694
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.05456936226167e-5
allele num: 48672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.805e1

DP
type: SiteQuality
SIO_000300: 9.48984e5

QD
type: SiteQuality
SIO_000300: 1.486e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.281722635221738e-4
allele num: 7802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.739e1

DP
type: SiteQuality
SIO_000300: 9.61595e5

VQSLOD
type: SiteQuality
SIO_000300: -1.003e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

GenotypeQuality
all individuals: 649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51288
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 2.842e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.090289e6

GenotypeQuality
all individuals: 391
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.566416040100251e-4
allele num: 6384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.134115e6

FS
type: SiteQuality
SIO_000300: 6.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.089e1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
all individuals: 2233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 18

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.115573404730031e-4
allele num: 8964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.844141069397042e-4
allele num: 10548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.988071570576541e-3
allele num: 6036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.490907710413424e-5
allele num: 52682
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

FS
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

DP
type: SiteQuality
SIO_000300: 1.190978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1011
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2117
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variant carriers: 3

GenotypeQuality
all individuals: 626
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52682
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.651162790697675e-4
allele num: 6450
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 1.190978e6

FS
type: SiteQuality
SIO_000300: 7.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1765
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.608024245922932e-5
allele num: 55432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11868
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e0

FS
type: SiteQuality
SIO_000300: 1.3578e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.220644e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.450179409329285e-5
allele num: 57968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.291563e6

QD
type: SiteQuality
SIO_000300: 1.377e1

MQRankSum
type: SiteQuality
SIO_000300: -9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -2.21e-1

FS
type: SiteQuality
SIO_000300: 9.494e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 390
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variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664281196951037e-5
allele num: 60086
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.273e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 3.106e0

DP
type: SiteQuality
SIO_000300: 1.341102e6

VQSLOD
type: SiteQuality
SIO_000300: -2.098e0

GenotypeQuality
all individuals: 4763
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 980
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 320
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 965
bin: 8.25e1
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GenotypeQuality
all individuals: 2135
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4609
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.063144511936714e-5
allele num: 14158
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.9e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.048e0

DP
type: SiteQuality
SIO_000300: 1.385737e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.528e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0