X-149839946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839946
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839946
    reference: chr 0
allele count: 1
allele frequency: 1.14322297420889e-5
allele num: 87472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1345C>T
  hgvsp: ENSP00000439784.1:p.Arg449Cys
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*186C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1579C>T
  hgvsp: ENSP00000389157.2:p.Arg527Cys
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1690C>T
  hgvsp: ENSP00000359423.2:p.Arg564Cys
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1554C>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 21200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg564Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

X-149839947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839947
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839947
    reference: chr 0
allele count: 1
allele frequency: 1.143196835631159e-5
allele num: 87474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1346G>A
  hgvsp: ENSP00000439784.1:p.Arg449His
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1555G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1691G>A
  hgvsp: ENSP00000359423.2:p.Arg564His
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1580G>A
  hgvsp: ENSP00000389157.2:p.Arg527His
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21169
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 299
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genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 398
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3274
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 106
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genotype quality: GenotypeQuality
  all individuals: 296
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genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg564His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD

X-149839951-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839951
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839951
    reference: chr 0
allele count: 2
allele frequency: 2.285975540061721e-5
allele num: 87490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*191C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1584C>T
  hgvsp: ENST00000413012.2:c.1584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1559C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1350C>T
  hgvsp: ENST00000543350.1:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1695C>T
  hgvsp: ENST00000370396.2:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 90
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  variant carriers: 0
hgvs: p.Asp565Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

X-149839957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839957
    reference: chr 0
allele count: 80
allele frequency: 9.144111192392099e-4
allele num: 87488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1590C>T
  hgvsp: ENST00000413012.2:c.1590C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1356C>T
  hgvsp: ENST00000543350.1:c.1356C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1701C>T
  hgvsp: ENST00000370396.2:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1565C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*197C>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 299
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5216
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 246
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20867
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6000
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31131
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 9.25e1
  variant carriers: 3
hgvs: p.Tyr567Tyr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

X-149839958-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839958
    reference: chr 0
allele count: 3
allele frequency: 3.42876735813475e-5
allele num: 87495
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1357A>G
  hgvsp: ENSP00000439784.1:p.Ile453Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1591A>G
  hgvsp: ENSP00000389157.2:p.Ile531Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1566A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1702A>G
  hgvsp: ENSP00000359423.2:p.Ile568Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*198A>G
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9897
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile568Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

X-149839965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839965
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839965
    reference: chr 0
allele count: 1
allele frequency: 1.143236043945994e-5
allele num: 87471
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1598G>A
  hgvsp: ENSP00000389157.2:p.Arg533Gln
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1364G>A
  hgvsp: ENSP00000439784.1:p.Arg455Gln
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1573G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1709G>A
  hgvsp: ENSP00000359423.2:p.Arg570Gln
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*205G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9897
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5964
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg570Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-149839967-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839967
    reference: chr 0
allele count: 1
allele frequency: 1.1433406126019e-5
allele num: 87463
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1575C>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1711C>G
  hgvsp: ENSP00000359423.2:p.Leu571Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1600C>G
  hgvsp: ENSP00000389157.2:p.Leu534Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*207C>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1366C>G
  hgvsp: ENSP00000439784.1:p.Leu456Val
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
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genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 197
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30873
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 177
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 1402
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 137
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 424
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genotype quality: GenotypeQuality
  all individuals: 201
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  variant carriers: 0
hgvs: p.Leu571Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

X-149839978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839978
    reference: chr 0
allele count: 1
allele frequency: 1.143837575064341e-5
allele num: 87425
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1377G>A
  hgvsp: ENST00000543350.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1722G>A
  hgvsp: ENST00000370396.2:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1586G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1611G>A
  hgvsp: ENST00000413012.2:c.1611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*218G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9899
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu574Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-149839984-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839984
    reference: chr 0
allele count: 1
allele frequency: 1.144217126641952e-5
allele num: 87396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1617C>A
  hgvsp: ENST00000413012.2:c.1617C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1592C>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1383C>A
  hgvsp: ENST00000543350.1:c.1383C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*224C>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1728C>A
  hgvsp: ENST00000370396.2:c.1728C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 20342
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
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genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9897
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu576Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

X-149839985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839985
    reference: chr 0
allele count: 6
allele frequency: 6.868760875538052e-5
allele num: 87352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1384G>A
  hgvsp: ENSP00000439784.1:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*225G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1593G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1729G>A
  hgvsp: ENSP00000359423.2:p.Ala577Thr
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1618G>A
  hgvsp: ENSP00000389157.2:p.Ala540Thr
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15474
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9898
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 159
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala577Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

X-149839985-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839985
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839985
    reference: chr 0
allele count: 1
allele frequency: 1.144793479256342e-5
allele num: 87352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*225G>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1618G>T
  hgvsp: ENSP00000389157.2:p.Ala540Ser
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1384G>T
  hgvsp: ENSP00000439784.1:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1729G>T
  hgvsp: ENSP00000359423.2:p.Ala577Ser
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1593G>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala577Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

X-149839996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149839996
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149839996
    reference: chr 0
allele count: 1
allele frequency: 1.144596930191033e-5
allele num: 87367
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*236C>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1629C>G
  hgvsp: ENST00000413012.2:c.1629C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1604C>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1740C>G
  hgvsp: ENST00000370396.2:c.1740C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1395C>G
  hgvsp: ENST00000543350.1:c.1395C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala580Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

X-149840024-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840024
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840024
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87240
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1768T>A
  hgvsp: ENSP00000359423.2:p.Ser590Thr
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1632T>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*264T>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1423T>A
  hgvsp: ENSP00000439784.1:p.Ser475Thr
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1657T>A
  hgvsp: ENSP00000389157.2:p.Ser553Thr
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
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genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
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genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
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genotype depth: GenotypeDepth
  all individuals: 328
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genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 3403
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 31552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser590Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-149840025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840025
    reference: chr 0
allele count: 1
allele frequency: 1.146236904243369e-5
allele num: 87242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1633C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1769C>T
  hgvsp: ENSP00000359423.2:p.Ser590Phe
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1658C>T
  hgvsp: ENSP00000389157.2:p.Ser553Phe
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1424C>T
  hgvsp: ENSP00000439784.1:p.Ser475Phe
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8454
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15852
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genotype depth: GenotypeDepth
  all individuals: 419
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genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9878
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
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genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 2422
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2924
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser590Phe
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-149840035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840035
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840035
    reference: chr 0
allele count: 1
allele frequency: 1.147223146374201e-5
allele num: 87167
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1668G>A
  hgvsp: ENST00000413012.2:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1434G>A
  hgvsp: ENST00000543350.1:c.1434G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*275G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1643G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1779G>A
  hgvsp: ENST00000370396.2:c.1779G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3406
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genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9877
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
hgvs: p.Ser593Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-149840039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840039
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840039
    reference: chr 0
allele count: 1
allele frequency: 1.147631289019464e-5
allele num: 87136
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1783A>G
  hgvsp: ENSP00000359423.2:p.Met595Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1438A>G
  hgvsp: ENSP00000439784.1:p.Met480Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1672A>G
  hgvsp: ENSP00000389157.2:p.Met558Val
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*279A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1647A>G
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31385
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met595Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-149840042-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840042
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840042
    reference: chr 0
allele count: 1
allele frequency: 1.147618118594856e-5
allele num: 87137
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1786A>C
  hgvsp: ENSP00000359423.2:p.Met596Leu
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1441A>C
  hgvsp: ENSP00000439784.1:p.Met481Leu
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1675A>C
  hgvsp: ENSP00000389157.2:p.Met559Leu
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*282A>C
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1650A>C
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 32
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 9876
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genotype quality: GenotypeQuality
  all individuals: 65
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genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met596Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

X-149840049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840049
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840049
    reference: chr 0
allele count: 8
allele frequency: 9.189065012634965e-5
allele num: 87060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1657A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.1682A>G
  hgvsp: ENSP00000389157.2:p.His561Arg
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*289A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.1448A>G
  hgvsp: ENSP00000439784.1:p.His483Arg
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.1793A>G
  hgvsp: ENSP00000359423.2:p.His598Arg
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5190
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1251
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 716
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1392
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genotype quality: GenotypeQuality
  all individuals: 81
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His598Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-149840077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840077
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840077
    reference: chr 0
allele count: 9
allele frequency: 1.04071508689971e-4
allele num: 86479
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1685C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*317C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18604
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
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genotype depth: GenotypeDepth
  all individuals: 419
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

X-149840085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840085
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840085
    reference: chr 0
allele count: 5
allele frequency: 5.799656660325709e-5
allele num: 86212
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*17C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*325C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*17C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1693C>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 821
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 419
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 361
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-149840086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840086
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840086
    reference: chr 0
allele count: 1
allele frequency: 1.160833478437518e-5
allele num: 86145
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*326G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1694G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*18G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*18G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*18G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 553
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

X-149840093-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840093
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840093
    reference: chr 0
allele count: 1
allele frequency: 1.162520344106022e-5
allele num: 86020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*25A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*25A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*333A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*25A>G
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1701A>G
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 820
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-149840094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840094
    reference: chr 0
allele count: 1
allele frequency: 1.163020597094775e-5
allele num: 85983
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*334G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1702G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*26G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*26G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

X-149840097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840097
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840097
    reference: chr 0
allele count: 28
allele frequency: 3.259718034390025e-4
allele num: 85897
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*337C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1705C>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23365
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

X-149840098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840098
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840098
    reference: chr 0
allele count: 2
allele frequency: 2.330160431545712e-5
allele num: 85831
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*338G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1706G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
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genotype depth: GenotypeDepth
  all individuals: 285
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 361
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9859
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2168
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genotype quality: GenotypeQuality
  all individuals: 3877
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-149840109-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840109
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840109
    reference: chr 0
allele count: 3
allele frequency: 3.515391556029482e-5
allele num: 85339
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*349G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1717G>A
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000389157
  ensembl transcript: ENST00000413012
  gene symbol: MTM1
  hgvsc: ENST00000413012.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 92
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15139
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-149840116-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149840116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149840116
    reference: chr 0
allele count: 2
allele frequency: 2.353855026068944e-5
allele num: 84967
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000359423
  ensembl transcript: ENST00000370396
  gene symbol: MTM1
  hgvsc: ENST00000370396.2:c.*48G>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000444015
  ensembl transcript: ENST00000542741
  gene symbol: MTM1
  hgvsc: ENST00000542741.1:c.*356G>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171100
  ensembl protein: ENSP00000439784
  ensembl transcript: ENST00000543350
  gene symbol: MTM1
  hgvsc: ENST00000543350.1:c.*48G>T
  variant of: http://identifiers.org/hgnc/7448
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171100
  ensembl transcript: ENST00000306167
  gene symbol: MTM1
  hgvsc: ENST00000306167.7:n.1724G>T
  variant of: http://identifiers.org/hgnc/7448
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9895
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
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genotype depth: GenotypeDepth
  all individuals: 560
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 432
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

X-149867636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867636
    reference: chr 0
allele count: 1
allele frequency: 1.198480326945433e-5
allele num: 83439
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-40T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-32T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-32T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19769
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-149867639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867639
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867639
    reference: chr 0
allele count: 1
allele frequency: 1.198264912406835e-5
allele num: 83454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-37C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-29C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-29C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-149867640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867640
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867640
    reference: chr 0
allele count: 43
allele frequency: 5.146126044184877e-4
allele num: 83558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-28G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11004
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-149867645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867645
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867645
    reference: chr 0
allele count: 1
allele frequency: 1.195071525030773e-5
allele num: 83677
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-31G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-23G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

X-149867651-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867651
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867651
    reference: chr 0
allele count: 2
allele frequency: 2.381944857976538e-5
allele num: 83965
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-17C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-25C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-149867652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867652
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867652
    reference: chr 0
allele count: 1
allele frequency: 1.189187903580645e-5
allele num: 84091
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-24A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-16A>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-149867654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867654
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867654
    reference: chr 0
allele count: 4
allele frequency: 4.751440280334976e-5
allele num: 84185
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-22G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-14G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

X-149867656-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867656
    reference: chr 0
allele count: 2
allele frequency: 2.371747740910277e-5
allele num: 84326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-12T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-20T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11059
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

X-149867657-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867658
    reference: chr 0
allele count: 1
allele frequency: 1.201071355649239e-5
allele num: 83259
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-11dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-3dupT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-3dupT
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-149867657-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867657
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867656
    reference: chr 0
allele count: 19
allele frequency: 2.282035575733554e-4
allele num: 83259
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-11delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-3delT
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-3delT
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10866
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 19926
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: AT
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

X-149867665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867665
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867665
    reference: chr 0
allele count: 1
allele frequency: 1.171426563268749e-5
allele num: 85366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-160-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-227-11T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-214-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-160-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-211-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.147-3T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.147-3T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

X-149867679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867679
    reference: chr 0
allele count: 3
allele frequency: 3.481166887140569e-5
allele num: 86178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-200C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.158C>T
  hgvsp: ENSP00000445281.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.158C>T
  hgvsp: ENSP00000434105.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.158C>T
  hgvsp: ENSP00000359417.3:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-149C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.158C>T
  hgvsp: ENSP00000436957.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-149C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.158C>T
  hgvsp: ENSP00000414178.2:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.158C>T
  hgvsp: ENSP00000387446.2:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.158C>T
  hgvsp: ENSP00000440534.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-203C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-224C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser53Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

X-149867754-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867754
    reference: chr 0
allele count: 5
allele frequency: 5.760435028053319e-5
allele num: 86799
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-128A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.74A>G
  hgvsp: ENSP00000414925.1:p.Asn25Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.233A>G
  hgvsp: ENSP00000434105.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.233A>G
  hgvsp: ENSP00000359417.3:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.233A>G
  hgvsp: ENSP00000440534.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.233A>G
  hgvsp: ENSP00000387446.2:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.233A>G
  hgvsp: ENSP00000445281.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-74A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-125A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.233A>G
  hgvsp: ENSP00000414178.2:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.233A>G
  hgvsp: ENSP00000436957.1:p.Asn78Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-149A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.74A>G
  hgvsp: ENSP00000389884.1:p.Asn25Ser
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-74A>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn78Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

X-149867768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867768
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867768
    reference: chr 0
allele count: 1
allele frequency: 1.160537096568292e-5
allele num: 86167
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.247T>G
  hgvsp: ENSP00000436957.1:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.88T>G
  hgvsp: ENSP00000389884.1:p.Tyr30Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-60T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-111T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-114T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.88T>G
  hgvsp: ENSP00000414925.1:p.Tyr30Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-60T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.247T>G
  hgvsp: ENSP00000445281.1:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.247T>G
  hgvsp: ENSP00000359417.3:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.247T>G
  hgvsp: ENSP00000387446.2:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.247T>G
  hgvsp: ENSP00000414178.2:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.247T>G
  hgvsp: ENSP00000440534.1:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.247T>G
  hgvsp: ENSP00000434105.1:p.Tyr83Asp
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-135T>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr83Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

X-149867798-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867798
    reference: chr 0
allele count: 2
allele frequency: 2.39612785738247e-5
allele num: 83468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-109+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-55+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-130+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.93+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-106+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.252+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.93+25C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-55+25C>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

X-149867806-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867806
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 82454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.93+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-109+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.93+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-130+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-55+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-106+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-55+33G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.252+33G>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

X-149867808-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867808
    reference: chr 0
allele count: 6
allele frequency: 7.272550968461371e-5
allele num: 82502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-55+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.93+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-109+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-55+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-106+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.252+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.93+35A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-130+35A>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11306
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-149867820-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867820
    reference: chr 0
allele count: 1
allele frequency: 1.243224426873539e-5
allele num: 80436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-55+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-109+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-130+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-106+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.93+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.93+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.252+47C>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-55+47C>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

X-149867821-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149867821
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149867821
    reference: chr 0
allele count: 5
allele frequency: 6.22231071730798e-5
allele num: 80356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.93+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-55+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.93+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-106+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-55+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-130+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-109+48A>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.252+48A>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-149880778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149880778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149880778
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10609
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.94-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-6319G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-6319G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-54-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.94-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-6319G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-6319G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-129-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-108-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-54-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-2173G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-6319G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.253-36G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-105-36G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-149880800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149880800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149880800
    reference: chr 0
allele count: 1
allele frequency: 9.18526683200147e-5
allele num: 10887
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.94-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-129-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-54-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-105-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.253-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-108-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-6297A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-2151A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-6297A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-6297A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-54-14A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-6297A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-6297A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.94-14A>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-149880838-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149880838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149880838
    reference: chr 0
allele count: 2
allele frequency: 1.799856011519078e-4
allele num: 11112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-6259G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.117+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.117+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-6259G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-6259G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-106+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-6259G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+1G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-2113G>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-6259G>T
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-106+1G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

X-149880859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149880859
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149880859
    reference: chr 0
allele count: 1
allele frequency: 9.045680687471733e-5
allele num: 11055
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-6238C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.117+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.117+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-106+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+22C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-6238C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-6238C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-2092C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-6238C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-6238C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

X-149880860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149880860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149880860
    reference: chr 0
allele count: 1
allele frequency: 9.044044496698923e-5
allele num: 11057
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.117+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-6237G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-2091G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-6237G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.117+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-6237G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-6237G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-6237G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+23G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-106+23G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ

X-149881440-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149881440
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149881440
    reference: chr 0
allele count: 1
allele frequency: 1.149161112387957e-4
allele num: 8702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-5657T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-1511T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.142T>C
  hgvsp: ENST00000436701.1:c.142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+603T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+603T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.142T>C
  hgvsp: ENST00000438018.1:c.142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-5657T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-5657T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+603T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+603T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-5657T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-5657T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-82+215T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+603T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.142T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

X-149881455-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149881455
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149881454
    reference: chr 0
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-5641delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-82+231delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+619delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+619delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-5641delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+619delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+619delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-5641delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-1495delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-5641delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.144+14delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-5641delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+619delA
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+14delA
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: CA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-149881486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149881486
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149881486
    reference: chr 0
allele count: 1
allele frequency: 1.256281407035176e-4
allele num: 7960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-82+261C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-82+649C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-5611C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-5611C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+44C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-5611C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+649C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-5611C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.144+44C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+649C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.253-1465C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-5611C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-85+649C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+649C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-149882960-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149882960
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149882960
    reference: chr 0
allele count: 1
allele frequency: 8.854258898530193e-5
allele num: 11294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2123G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4137G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.262G>A
  hgvsp: ENSP00000436957.1:p.Glu88Lys
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4137G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4137G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2123G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-72G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4137G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1518G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.154G>A
  hgvsp: ENSP00000414925.1:p.Glu52Lys
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-75G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4137G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-72G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2123G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu88Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

X-149882977-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149882977
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149882977
    reference: chr 0
allele count: 10
allele frequency: 8.873114463176575e-4
allele num: 11270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2140C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-58C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-55C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4120C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4120C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-55C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.279C>A
  hgvsp: ENSP00000436957.1:p.Tyr93Ter
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2140C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1535C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4120C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.171C>A
  hgvsp: ENSP00000414925.1:p.Tyr57Ter
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2140C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4120C>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4120C>A
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: stop gained
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr93Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-149882980-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149882980
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149882980
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11329
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-55T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4117T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-52T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.282T>C
  hgvsp: ENST00000490316.2:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.174T>C
  hgvsp: ENST00000436701.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4117T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-52T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4117T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2143T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2143T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2143T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4117T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1538T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4117T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro94Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

X-149883002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149883002
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149883002
    reference: chr 0
allele count: 1
allele frequency: 8.869179600886918e-5
allele num: 11275
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-31+1G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2165G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4095G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.195+1G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-31+1G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2165G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.303+1G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2165G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4095G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4095G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-33G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1560G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4095G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4095G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-31+1G>A
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-149883014-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149883014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149883014
    reference: chr 0
allele count: 3
allele frequency: 2.682643297862827e-4
allele num: 11183
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2177A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-31+13A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4083A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.195+13A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2177A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4083A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-31+10A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2177A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-31+13A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4083A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.303+13A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1572A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4083A>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4083A>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

X-149883042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149883042
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149883042
    reference: chr 0
allele count: 60
allele frequency: 5.502063273727648e-3
allele num: 10905
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-31+2205C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-31+41C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-4055C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-31+38C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.303+41C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.144+1600C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-31+41C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-4055C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-31+2205C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-4055C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-4055C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.195+41C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-4055C>T
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.276+2205C>T
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-149887046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887046
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887046
    reference: chr 0
allele count: 1
allele frequency: 2.173629526583489e-5
allele num: 46006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-51G>A
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-51G>A
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

X-149887047-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887047
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887047
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 46907
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-50T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-50T>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

X-149887048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887048
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 47035
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-49T>C
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-49T>C
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

X-149887048-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887048
    reference: chr 0
allele count: 2
allele frequency: 4.252152652280217e-5
allele num: 47035
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-49T>G
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-49T>G
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

X-149887054-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887053
    reference: chr 0
allele count: 52260
allele frequency: 9.861865942028986e-1
allele num: 52992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-41delC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-41delC
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.5e0
  variant carriers: 8617
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 1.75e1
  variant carriers: 8415
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 7.5e0
  variant carriers: 15217
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 4817
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 703
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 2627
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 1.25e1
  variant carriers: 13048
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 221
genotype quality: GenotypeQuality
num of homozygotes: 19639
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: TC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

X-149887054-TCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887052
    reference: chr 0
allele count: 4
allele frequency: 7.548309178743961e-5
allele num: 52992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000387446
  ensembl transcript: ENST00000451863
  gene symbol: MTMR1
  hgvsc: ENST00000451863.2:c.253-42_253-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  hgvsc: ENST00000445323.2:c.277-42_277-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  hgvsc: ENST00000438018.1:c.145-42_145-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  hgvsc: ENST00000541925.1:c.-30-42_-30-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  hgvsc: ENST00000370390.3:c.253-42_253-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  hgvsc: ENST00000429965.2:c.-30-42_-30-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  hgvsc: ENST00000439546.2:c.-30-42_-30-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000440534
  ensembl transcript: ENST00000544228
  gene symbol: MTMR1
  hgvsc: ENST00000544228.1:c.253-42_253-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  hgvsc: ENST00000493995.2:c.-30-42_-30-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  hgvsc: ENST00000485376.1:c.253-42_253-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  hgvsc: ENST00000542156.1:c.253-42_253-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  hgvsc: ENST00000490316.2:c.304-42_304-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  hgvsc: ENST00000434699.2:c.-30-42_-30-41delCC
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414925
  ensembl transcript: ENST00000436701
  gene symbol: MTMR1
  hgvsc: ENST00000436701.1:c.196-42_196-41delCC
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: TCC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-149887055-CCTTTTTTTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887043
    reference: chr 0
allele count: 12
allele frequency: 7.957559681697613e-3
allele num: 1508
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 140
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 99
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genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 69
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 1.111111111111111e-1
  allele num: 18
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
reference allele: CCTTTTTTTTTTT
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

X-149887055-CCTTTTTTTTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887042
    reference: chr 0
allele count: 9
allele frequency: 5.968169761273209e-3
allele num: 1508
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 39
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genotype depth: GenotypeDepth
  all individuals: 99
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 653
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
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  variant carriers: 3
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 5.555555555555555e-2
  allele num: 18
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1211
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 81
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CCTTTTTTTTTTTT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

X-149887055-CCTTTTTTTTTTTTTTTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887035
    reference: chr 0
allele count: 18
allele frequency: 1.193633952254642e-2
allele num: 1508
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
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  variant carriers: 9
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 653
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 18
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 81
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 2
  allele frequency: 5.0e-1
  allele num: 4
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
reference allele: CCTTTTTTTTTTTTTTTTTTT
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

X-149887055-CCTTTTTTTTTTTTTTTTTTTTTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149887055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149887029
    reference: chr 0
allele count: 727
allele frequency: 4.820954907161804e-1
allele num: 1508
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000434105
  ensembl transcript: ENST00000485376
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000389884
  ensembl transcript: ENST00000438018
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000431992
  ensembl transcript: ENST00000493995
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000404599
  ensembl transcript: ENST00000439546
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000359417
  ensembl transcript: ENST00000370390
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000414178
  ensembl transcript: ENST00000445323
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000405946
  ensembl transcript: ENST00000434699
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000390736
  ensembl transcript: ENST00000429965
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000436957
  ensembl transcript: ENST00000490316
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000441879
  ensembl transcript: ENST00000541925
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000063601
  ensembl protein: ENSP00000445281
  ensembl transcript: ENST00000542156
  gene symbol: MTMR1
  variant of: http://identifiers.org/hgnc/7449
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
num of homozygotes: 24
reference allele: CCTTTTTTTTTTTTTTTTTTTTTTTTT

GenotypeQuality
all individuals: 9905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30917
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8491
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.089121942047757e-5
allele num: 47867
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4521
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6621
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 6.482e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e-1

DP
type: SiteQuality
SIO_000300: 1.893296e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 2431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9905
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088860109038498e-5
allele num: 47873
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10065
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.893428e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.924e1

VQSLOD
type: SiteQuality
SIO_000300: -2.131e0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5977
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088554720133668e-5
allele num: 47880
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.510574018126888e-4
allele num: 6620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 9.717000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 1.895334e6

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 1.72e1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9929
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 5.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.210921954455008e-4
allele num: 4523
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.589825119236884e-3
allele num: 629
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8489
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.341896944252982e-4
allele num: 47877
num of homozygotes: 0

South Asian
type: Population
allele count: 62
allele frequency: 6.156901688182721e-3
allele num: 10070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.898848e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.297e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.03e-1

QD
type: SiteQuality
SIO_000300: 2.008e1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.592356687898089e-3
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9283
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4523
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.177283929988721e-5
allele num: 47878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
SIO_000300: 1.924e1

FS
type: SiteQuality
SIO_000300: 8.366e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

DP
type: SiteQuality
SIO_000300: 1.895643e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.332e-1

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47861
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10073
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 1.896218e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.278e0

FS
type: SiteQuality
SIO_000300: 8.46e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
all individuals: 2433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9896
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.178411501296253e-4
allele num: 8486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.896072e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: -1.413e0

VQSLOD
type: SiteQuality
SIO_000300: -8.227e-1

FS
type: SiteQuality
SIO_000300: 1.0071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10077
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.389e0

VQSLOD
type: SiteQuality
SIO_000300: -2.577e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 1.2996e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.407e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.895443e6

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
all individuals: 31020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.179384361363368e-4
allele num: 8479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9279
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.719999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.441e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 1.896156e6

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.198e1

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.08215297450425e-4
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47797
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.652e1

DP
type: SiteQuality
SIO_000300: 1.897316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.169e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9898
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5889
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.934432743890324e-5
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47797
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6601
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.897316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.169e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.652e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10077
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47793
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4519
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6597
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.107e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.898358e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9878
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47749
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4517
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

VQSLOD
type: SiteQuality
SIO_000300: -3.76e-1

DP
type: SiteQuality
SIO_000300: 1.897335e6

FS
type: SiteQuality
SIO_000300: 1.925e0

QD
type: SiteQuality
SIO_000300: 2.544e1

MQRankSum
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2146
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8439
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.094240837696335e-5
allele num: 47750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

DP
type: SiteQuality
SIO_000300: 1.897311e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 2.736e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096304215667778e-5
allele num: 47703
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.168e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.89626e6

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2930
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097095522701059e-5
allele num: 47685
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10055
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.938e0

FS
type: SiteQuality
SIO_000300: 7.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

QD
type: SiteQuality
SIO_000300: 2.145e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.497e0

DP
type: SiteQuality
SIO_000300: 1.894901e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2147
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5905
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8429
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.096963596711961e-5
allele num: 47688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10055
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

DP
type: SiteQuality
SIO_000300: 1.894868e6

QD
type: SiteQuality
SIO_000300: 3.225e1

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 5872
bin: 6.75e1
variant carriers: 1

East Asian
type: Population
allele count: 7
allele frequency: 1.068213032198993e-3
allele num: 6553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47649
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9252
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.955201592832254e-5
allele num: 10045
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.893336e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.989999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.382063882063882e-3
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47341
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8379
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9939
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.713e-1

FS
type: SiteQuality
SIO_000300: 3.579e0

QD
type: SiteQuality
SIO_000300: 1.688e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.446e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.865414e6

GenotypeQuality
all individuals: 2612
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27650
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
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variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.089205968848709e-4
allele num: 9181
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47189
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.080240258740182e-4
allele num: 6493
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.019590023225285e-4
allele num: 9903
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.84361e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 27653
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9885
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9171
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120575948427593e-5
allele num: 47157
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.358e1

FS
type: SiteQuality
SIO_000300: 1.144e0

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.843561e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9875
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6475
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.123953952678306e-5
allele num: 47082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.283e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.779e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2202
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GenotypeQuality
all individuals: 5090
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.124766275709672e-5
allele num: 47064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.822e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

FS
type: SiteQuality
SIO_000300: 3.09e0

QD
type: SiteQuality
SIO_000300: 1.972e1

DP
type: SiteQuality
SIO_000300: 1.810011e6

GenotypeQuality
all individuals: 1373
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 21

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 1

South Asian
type: Population
allele count: 7
allele frequency: 7.096512570965125e-4
allele num: 9864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.381077976772877e-5
allele num: 47014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6467
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 2.161123784367871e-3
allele num: 8329
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.741e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

DP
type: SiteQuality
SIO_000300: 1.794909e6

GenotypeQuality
all individuals: 113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22678
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6465
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.128474735004895e-5
allele num: 46982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.084e0

QD
type: SiteQuality
SIO_000300: 1.385e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.787689e6

GenotypeQuality
all individuals: 2127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.423570220328458e-5
allele num: 46703
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.058e1

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.125e-1

DP
type: SiteQuality
SIO_000300: 1.724654e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
all individuals: 1366
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variant carriers: 0

GenotypeQuality
all individuals: 2029
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variant carriers: 0

GenotypeQuality
all individuals: 4706
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.199494116353239e-4
allele num: 9093
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8231
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6399
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.705065e6

QD
type: SiteQuality
SIO_000300: 1.187e1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.669e0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeDepth
all individuals: 550
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
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variant carriers: 0

GenotypeQuality
all individuals: 585
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 673
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GenotypeQuality
all individuals: 7458
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2074
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7203
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GenotypeQuality
all individuals: 1492
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variant carriers: 0

GenotypeQuality
all individuals: 944
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variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.401934669844385e-4
allele num: 7133
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.239e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 1.91578e6

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

GenotypeDepth
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2717
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variant carriers: 0

GenotypeQuality
all individuals: 7457
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variant carriers: 1

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 1496
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7210
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 2273
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30590
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variant carriers: 0

GenotypeQuality
all individuals: 2070
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7139
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.129789363831917e-5
allele num: 46953
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8347
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 1.919188e6

FS
type: SiteQuality
SIO_000300: 1.624e0

VQSLOD
type: SiteQuality
SIO_000300: -5.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
type: SiteQuality
SIO_000300: 1.785e1

GenotypeDepth
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 2827
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 43

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.463427771194657e-4
allele num: 9283
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 4.428485936564931e-3
allele num: 8355
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46986
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

BaseQRankSum
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SIO_000300: 2.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.922115e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.019e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 5.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.15e-1

QD
type: SiteQuality
SIO_000300: 1.751e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7267
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.126528442317916e-5
allele num: 47025
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.276e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeDepth
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 185
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 3028
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7437
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.244662337111083e-5
allele num: 47118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6615
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.726e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.119e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

DP
type: SiteQuality
SIO_000300: 1.931361e6

GenotypeDepth
all individuals: 1243
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3030
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8393
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7505
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.120306172211267e-5
allele num: 47163
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

FS
type: SiteQuality
SIO_000300: 5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.967e0

DP
type: SiteQuality
SIO_000300: 1.932462e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.148e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8393
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.044122091266244e-4
allele num: 6618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7575
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e0

FS
type: SiteQuality
SIO_000300: 5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.553e1

VQSLOD
type: SiteQuality
SIO_000300: -7.566000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

DP
type: SiteQuality
SIO_000300: 1.934839e6

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeDepth
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 3035
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 949
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GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.190334483990001e-4
allele num: 8401
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.118060703619766e-5
allele num: 47213
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9287
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

DP
type: SiteQuality
SIO_000300: 1.936597e6

QD
type: SiteQuality
SIO_000300: 3.371e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

GenotypeDepth
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1402
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1944
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139632411151764e-5
allele num: 46737
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.694e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 1.990437e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeDepth
all individuals: 310
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1402
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 17

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 934
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 282
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 11

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.711705928921411e-4
allele num: 46737
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6575
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.196172248803828e-4
allele num: 8360
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.385425325574952e-3
allele num: 7218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 1.990437e6

ClippingRankSum
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BaseQRankSum
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SIO_000300: -7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.694e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.99e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeDepth
all individuals: 225
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2850
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9297
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.107303915370675e-5
allele num: 47454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 2.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 447
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 885
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 619
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.523522316043426e-4
allele num: 6632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8487
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.45e-2

FS
type: SiteQuality
SIO_000300: 3.202e0

DP
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SIO_000300: 1.966049e6

MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 6.029544769369913e-4
allele num: 6634
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.103845830177565e-5
allele num: 47532
num of homozygotes: 0

South Asian
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African
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
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QD
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 46251
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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FS
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Other
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Latino
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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QD
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DP
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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allele num: 45766
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East Asian
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African
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European (Finnish)
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Other
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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QD
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Other
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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African
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ReadPosRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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num of homozygotes: 0

Other
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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MQ
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MQRankSum
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QD
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FS
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ReadPosRankSum
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SIO_000300: 6.3e-1

InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 375
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1246
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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allele num: 4012
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DP
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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DP
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ClippingRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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FS
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 2.816901408450704e-3
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European (Finnish)
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 5.717552887364208e-4
allele num: 1749
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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Latino
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African
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East Asian
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Other
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 4086
num of homozygotes: 0

Latino
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African
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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BaseQRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 4090
num of homozygotes: 0

Latino
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African
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East Asian
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South Asian
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European (Finnish)
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Other
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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VQSLOD
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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MQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1249
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 739
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4049
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 8.0e-3
allele num: 375
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.698e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.583e0

InbreedingCoeff
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SIO_000300: -9.7e-3

MQ
type: SiteQuality
SIO_000300: 5.9e1

DP
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SIO_000300: 2.94393e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 739
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.510670348983179e-4
allele num: 3983
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 215
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 375
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

South Asian
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allele frequency: 1.378654623246969e-2
allele num: 4207
num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

DP
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ReadPosRankSum
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QD
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VQSLOD
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SIO_000300: 3.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.058e-1

FS
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
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SIO_000300: 2.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.039983680130559e-4
allele num: 4902
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4733
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2999
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
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DP
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SIO_000300: 7.54507e5

MQ
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SIO_000300: 5.761e1

QD
type: SiteQuality
SIO_000300: 2.128e1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.138e0

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

BaseQRankSum
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SIO_000300: 7.36e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4051
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
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DP
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QD
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MQRankSum
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SIO_000300: -7.36e-1

BaseQRankSum
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SIO_000300: -7.36e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3043
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.702e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
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SIO_000300: 2.27e-2

ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.671e1

DP
type: SiteQuality
SIO_000300: 7.62253e5

GenotypeDepth
all individuals: 114
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.50140056022409e-4
allele num: 5712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3043
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.702e1

QD
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeDepth
all individuals: 254
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variant carriers: 243

GenotypeDepth
all individuals: 80
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variant carriers: 79

GenotypeDepth
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GenotypeDepth
all individuals: 1368
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variant carriers: 1363

GenotypeDepth
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variant carriers: 80

GenotypeDepth
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variant carriers: 110

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3930

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3793

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3416

GenotypeQuality
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GenotypeQuality
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variant carriers: 2611

GenotypeQuality
all individuals: 3846
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variant carriers: 3815

GenotypeQuality
all individuals: 5011
bin: 2.25e1
variant carriers: 4986

African
type: Population
allele count: 5547
allele frequency: 9.068170671897989e-1
allele num: 6117
num of homozygotes: 2204

East Asian
type: Population
allele count: 4559
allele frequency: 9.978113372729263e-1
allele num: 4569
num of homozygotes: 1842

Other
type: Population
allele count: 374
allele frequency: 9.920424403183024e-1
allele num: 377
num of homozygotes: 137

European (Finnish)
type: Population
allele count: 2731
allele frequency: 9.996339677891655e-1
allele num: 2732
num of homozygotes: 928

European (Non-Finnish)
type: Population
allele count: 26120
allele frequency: 9.959202348724597e-1
allele num: 26227
num of homozygotes: 9987

Latino
type: Population
allele count: 6614
allele frequency: 9.942874323511726e-1
allele num: 6652
num of homozygotes: 2910

South Asian
type: Population
allele count: 6315
allele frequency: 9.995251661918328e-1
allele num: 6318
num of homozygotes: 1631

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.349e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.237e1

FS
type: SiteQuality
SIO_000300: 2.1385e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

DP
type: SiteQuality
SIO_000300: 7.92776e5

QD
type: SiteQuality
SIO_000300: 3.091e1

GenotypeDepth
all individuals: 414
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2635
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 254
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5622
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3436
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4569
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.503307276007216e-4
allele num: 6652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6117
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 377
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.143859381553361e-4
allele num: 26227
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 3.091e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.349e-1

DP
type: SiteQuality
SIO_000300: 7.92776e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 2.1385e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.237e1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 5.405405405405406e-2
allele num: 185
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1211
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 81
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 3.6262e4

FS
type: SiteQuality
SIO_000300: 3.423e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.686e0

MQ
type: SiteQuality
SIO_000300: 4.605e1

VQSLOD
type: SiteQuality
SIO_000300: -4.157e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 4.324324324324325e-2
allele num: 185
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 3.6262e4

VQSLOD
type: SiteQuality
SIO_000300: -4.157e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.686e0

MQ
type: SiteQuality
SIO_000300: 4.605e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.243e0

FS
type: SiteQuality
SIO_000300: 3.423e0

QD
type: SiteQuality
SIO_000300: 2.46e0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 8.108108108108109e-2
allele num: 185
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.257638315441783e-4
allele num: 1211
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.686e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.157e-1

FS
type: SiteQuality
SIO_000300: 3.423e0

DP
type: SiteQuality
SIO_000300: 3.6262e4

MQ
type: SiteQuality
SIO_000300: 4.605e1