X-224590-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000224590
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000224590
    reference: chr 0
allele count: 8
allele frequency: 1.185887933590276e-4
allele num: 67460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.437-43G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.439-43G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1046-43G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 86
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genotype quality: GenotypeQuality
  all individuals: 695
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

X-224590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000224590
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000224590
    reference: chr 0
allele count: 1
allele frequency: 1.482359916987845e-5
allele num: 67460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.437-43G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1046-43G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.439-43G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

X-224591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000224591
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000224591
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 67088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1046-44G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.437-44G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.439-44G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

X-224593-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000224593
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000224593
    reference: chr 0
allele count: 37987
allele frequency: 5.414184316296571e-1
allele num: 70162
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.439-46A>G
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.437-46A>G
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1046-46A>G
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 217
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 652
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  variant carriers: 603
num of homozygotes: 10213
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-224594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000224594
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000224594
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 66466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1046-47C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.437-47C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.439-47C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
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X-228036-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228036
    reference: chr 0
allele count: 1
allele frequency: 1.922115865144351e-5
allele num: 52026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+50G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+50G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+50G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

X-228036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228036
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228036
    reference: chr 0
allele count: 2
allele frequency: 3.844231730288702e-5
allele num: 52026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+50G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+50G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+50G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

X-228037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228037
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228037
    reference: chr 0
allele count: 1
allele frequency: 1.885298442743486e-5
allele num: 53042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+49C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+49C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+49C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-228041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228041
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228041
    reference: chr 0
allele count: 2
allele frequency: 3.787735313056323e-5
allele num: 52802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+45G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+45G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+45G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5594
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-228042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228042
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228042
    reference: chr 0
allele count: 1
allele frequency: 1.863655000186366e-5
allele num: 53658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+44C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+44C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+44C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24005
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13495
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5596
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

X-228043-A-AGTGGGTGTCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228043
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228054
    reference: chr 0
allele count: 639
allele frequency: 1.187379218076409e-2
allele num: 53816
alternate allele: AGTGGGTGTCTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 24132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 9.75e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5972
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6446
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 19008
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.75e1
  variant carriers: 3
num of homozygotes: 191
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-228044-A-AGAGCCCGGCCCCTGGGCAGGGGGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228130
    reference: chr 0
allele count: 1
allele frequency: 1.728967115045472e-5
allele num: 57838
alternate allele: AGAGCCCGGCCCCTGGGCAGGGGGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

X-228044-A-AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCCGGCCCCTGGCTGTGGGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228130
    reference: chr 0
allele count: 2
allele frequency: 3.457934230090943e-5
allele num: 57838
alternate allele: AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCCGGCCCCTGGCTGTGGGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-228044-A-AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228130
    reference: chr 0
allele count: 632
allele frequency: 1.092707216708738e-2
allele num: 57838
alternate allele: AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCAGCCCCCGTGCCGAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 9.75e1
  variant carriers: 296
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 13
num of homozygotes: 188
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-228044-A-AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCGGCCCCCGTGCCGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228130
    reference: chr 0
allele count: 1
allele frequency: 1.728967115045472e-5
allele num: 57838
alternate allele: AGAGCCCGGCCCCTGGGCAGGGTGGGTGTCCGAGAGCCTGGCCCCTGGCTGTGTGTGTGTGTCTGAGTGCCCGGCCCCCGTGCCGAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

X-228044-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228044
    reference: chr 0
allele count: 26520
allele frequency: 4.585220789100591e-1
allele num: 57838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+42T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+42T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+42T>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21035
  bin: 7.5e0
  variant carriers: 10874
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 4.75e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 2.75e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 1.25e1
  variant carriers: 10607
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 6.25e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 1.75e1
  variant carriers: 4551
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.5e0
  variant carriers: 1294
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 1393
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.75e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.25e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 404
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 604
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 8528
  bin: 2.25e1
  variant carriers: 2148
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 759
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 7.5e0
  variant carriers: 608
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 9.75e1
  variant carriers: 16676
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
  variant carriers: 628
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 6.75e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 8.75e1
  variant carriers: 870
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 1291
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 473
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 1150
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 6.25e1
  variant carriers: 531
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.25e1
  variant carriers: 1624
genotype quality: GenotypeQuality
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 1828
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 808
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.75e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 9.25e1
  variant carriers: 800
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 932
num of homozygotes: 5932
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

X-228053-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+33G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+33G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+33G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15709
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

X-228053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
allele count: 2
allele frequency: 3.419271011420365e-5
allele num: 58492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+33G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+33G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+33G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

X-228053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228053
    reference: chr 0
allele count: 653
allele frequency: 1.116391985228749e-2
allele num: 58492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+33G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+33G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+33G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20222
  bin: 7.5e0
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 1.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5301
  bin: 9.75e1
  variant carriers: 646
genotype quality: GenotypeQuality
  all individuals: 15709
  bin: 2.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 565
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  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 9.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 6.75e1
  variant carriers: 9
num of homozygotes: 5
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

X-228054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228054
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228054
    reference: chr 0
allele count: 3
allele frequency: 4.320152069352841e-5
allele num: 69442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+32C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+32C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+32C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15533
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20225
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 603
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genotype quality: GenotypeQuality
  all individuals: 754
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5114
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

X-228056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228056
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228056
    reference: chr 0
allele count: 898
allele frequency: 1.276728844404004e-2
allele num: 70336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+30C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+30C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+30C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 203
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  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 303
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  variant carriers: 36
genotype depth: GenotypeDepth
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  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 1.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 20164
  bin: 7.5e0
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 5389
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  variant carriers: 195
genotype depth: GenotypeDepth
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  variant carriers: 29
genotype depth: GenotypeDepth
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  variant carriers: 16
genotype depth: GenotypeDepth
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  variant carriers: 19
genotype depth: GenotypeDepth
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  variant carriers: 80
genotype depth: GenotypeDepth
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  variant carriers: 27
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 269
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  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1177
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  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 123
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 595
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  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1450
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  variant carriers: 7
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 896
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
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  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 540
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  variant carriers: 13
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 179
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  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4243
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2055
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  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 17943
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4548
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  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 6.75e1
  variant carriers: 10
num of homozygotes: 33
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

X-228056-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228056
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228055
    reference: chr 0
allele count: 7
allele frequency: 9.952229299363058e-5
allele num: 70336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+29delG
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+29delG
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+29delG
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20164
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5810
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GC
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

X-228057-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228057
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228057
    reference: chr 0
allele count: 56
allele frequency: 9.045680687471732e-4
allele num: 61908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+29G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+29G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+29G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 9
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19935
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 13
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 502
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 22
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-228058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228058
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228058
    reference: chr 0
allele count: 57
allele frequency: 9.109214689807268e-4
allele num: 62574
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+28T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+28T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+28T>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1370
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14928
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20006
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
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  variant carriers: 5
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 504
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  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

X-228058-ACCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228058
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228055
    reference: chr 0
allele count: 7
allele frequency: 1.118675488221945e-4
allele num: 62574
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+25_438+27delGGG
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+25_1045+27delGGG
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+25_436+27delGGG
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
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genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17718
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: ACCC
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

X-228061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228061
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228061
    reference: chr 0
allele count: 1
allele frequency: 1.386885609674914e-5
allele num: 72104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+25G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+25G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+25G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14404
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4839
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-228062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228062
    reference: chr 0
allele count: 1
allele frequency: 1.349928453791949e-5
allele num: 74078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+24C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+24C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+24C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-228062-GATC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228062
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228059
    reference: chr 0
allele count: 7
allele frequency: 9.449499176543644e-5
allele num: 74078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+21_436+23delGAT
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+21_438+23delGAT
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+21_1045+23delGAT
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7895
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4777
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: GATC
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-228063-A-AGGGTGGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228072
    reference: chr 0
allele count: 1
allele frequency: 1.480604086467279e-5
allele num: 67540
alternate allele: AGGGTGGGTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13246
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7731
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

X-228063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228063
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228063
    reference: chr 0
allele count: 30
allele frequency: 4.441812259401836e-4
allele num: 67540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+23T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+23T>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+23T>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8743
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19507
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4904
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

X-228064-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228064
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228064
    reference: chr 0
allele count: 30
allele frequency: 4.406580493537015e-4
allele num: 68080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+22A>G
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+22A>G
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+22A>G
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 125
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 19459
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4421
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5254
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

X-228066-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228066
    reference: chr 0
allele count: 1
allele frequency: 1.311337826850953e-5
allele num: 76258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+20G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+20G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+20G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5562
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-228066-C-CGAGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228066
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228071
    reference: chr 0
allele count: 1
allele frequency: 1.311337826850953e-5
allele num: 76258
alternate allele: CGAGAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+19_1045+20insCTCTC
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+19_438+20insCTCTC
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+19_436+20insCTCTC
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5010
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

X-228067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228067
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228067
    reference: chr 0
allele count: 21
allele frequency: 2.729186702362696e-4
allele num: 76946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+19G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+19G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+19G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19029
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 5025
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-228068-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228068
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228068
    reference: chr 0
allele count: 5
allele frequency: 6.946567006585346e-5
allele num: 71978
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+18G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+18G>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+18G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 982
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-228068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228068
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228068
    reference: chr 0
allele count: 26
allele frequency: 3.61221484342438e-4
allele num: 71978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+18G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+18G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+18G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

X-228069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228069
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228069
    reference: chr 0
allele count: 3
allele frequency: 3.804788961038961e-5
allele num: 78848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+17C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+17C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+17C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-228071-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228071
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228071
    reference: chr 0
allele count: 15
allele frequency: 1.961912734121586e-4
allele num: 76456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+15G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+15G>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+15G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

X-228072-C-CAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228075
    reference: chr 0
allele count: 5
allele frequency: 6.181998021760633e-5
allele num: 80880
alternate allele: CAGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+13_1045+14insCCT
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+13_438+14insCCT
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+13_436+14insCCT
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17467
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18134
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

X-228072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228072
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228072
    reference: chr 0
allele count: 150
allele frequency: 1.85459940652819e-3
allele num: 80880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+14G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+14G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+14G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14432
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 17467
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9939
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13778
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 9.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 1
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

X-228073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228073
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228073
    reference: chr 0
allele count: 13
allele frequency: 1.614024632499007e-4
allele num: 80544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+13C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+13C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+13C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16768
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2181
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

X-228079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228079
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228079
    reference: chr 0
allele count: 12
allele frequency: 1.367833124358828e-4
allele num: 87730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+7G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+7G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+7G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14421
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20757
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5016
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
hgvs: c.438+7G>A
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

X-228080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228080
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228080
    reference: chr 0
allele count: 1
allele frequency: 1.109582353202255e-5
allele num: 90124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.436+6C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.438+6C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1045+6C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20116
  bin: 6.25e1
  variant carriers: 0
hgvs: c.438+6C>T
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

X-228089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228089
    reference: chr 0
allele count: 2
allele frequency: 1.964212056333602e-5
allele num: 101822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1042C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.433C>T
  hgvsp: ENST00000400701.3:c.433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.435C>T
  hgvsp: ENST00000326153.4:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2128
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His145His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

X-228089-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228089
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228089
    reference: chr 0
allele count: 1
allele frequency: 9.821060281668008e-6
allele num: 101822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.433C>A
  hgvsp: ENSP00000383537.3:p.His145Gln
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1042C>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.435C>A
  hgvsp: ENSP00000316598.4:p.His145Gln
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2128
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  variant carriers: 0
hgvs: p.His145Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

X-228094-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228094
    reference: chr 0
allele count: 1
allele frequency: 9.483167377904219e-6
allele num: 105450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.428G>C
  hgvsp: ENSP00000383537.3:p.Ala144Pro
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.430G>C
  hgvsp: ENSP00000316598.4:p.Ala144Pro
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1037G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala144Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-228094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228094
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228094
    reference: chr 0
allele count: 1
allele frequency: 9.483167377904219e-6
allele num: 105450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.430G>A
  hgvsp: ENSP00000316598.4:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1037G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.428G>A
  hgvsp: ENSP00000383537.3:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala144Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-228097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228097
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228097
    reference: chr 0
allele count: 3
allele frequency: 2.7838610296574e-5
allele num: 107764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1034G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.427G>A
  hgvsp: ENSP00000316598.4:p.Val143Met
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.425G>A
  hgvsp: ENSP00000383537.3:p.Val143Met
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val143Met
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

X-228098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228098
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228098
    reference: chr 0
allele count: 2
allele frequency: 1.843283994765073e-5
allele num: 108502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1033C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.426C>T
  hgvsp: ENST00000326153.4:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.424C>T
  hgvsp: ENST00000400701.3:c.424C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 568
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  variant carriers: 0
hgvs: p.Asp142Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

X-228100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228100
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228100
    reference: chr 0
allele count: 1
allele frequency: 9.101499927188e-6
allele num: 109872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1031G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.422G>A
  hgvsp: ENSP00000383537.3:p.Asp142Asn
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.424G>A
  hgvsp: ENSP00000316598.4:p.Asp142Asn
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp142Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

X-228107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228107
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228107
    reference: chr 0
allele count: 1
allele frequency: 8.843766029325928e-6
allele num: 113074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1024C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.415C>T
  hgvsp: ENST00000400701.3:c.415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.417C>T
  hgvsp: ENST00000326153.4:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32706
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr139Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-228108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228108
    reference: chr 0
allele count: 1
allele frequency: 8.819119851838787e-6
allele num: 113390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.416C>T
  hgvsp: ENSP00000316598.4:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1023C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.414C>T
  hgvsp: ENSP00000383537.3:p.Thr139Ile
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 516
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3601
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr139Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

X-228108-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228108
    reference: chr 0
allele count: 2
allele frequency: 1.763823970367757e-5
allele num: 113390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.414C>A
  hgvsp: ENSP00000383537.3:p.Thr139Asn
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1023C>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.416C>A
  hgvsp: ENSP00000316598.4:p.Thr139Asn
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6422
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genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr139Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-228112-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228112
    reference: chr 0
allele count: 16
allele frequency: 1.397331097603577e-4
allele num: 114504
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.412G>T
  hgvsp: ENSP00000316598.4:p.Ala138Ser
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.410G>T
  hgvsp: ENSP00000383537.3:p.Ala138Ser
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1019G>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala138Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

X-228112-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228112
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228112
    reference: chr 0
allele count: 3
allele frequency: 2.619995808006707e-5
allele num: 114504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1019G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.412G>A
  hgvsp: ENSP00000316598.4:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.410G>A
  hgvsp: ENSP00000383537.3:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 701
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala138Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-228113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228113
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228113
    reference: chr 0
allele count: 3
allele frequency: 2.604031040049998e-5
allele num: 115206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1018C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.411C>T
  hgvsp: ENST00000326153.4:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.409C>T
  hgvsp: ENST00000400701.3:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 285
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 33035
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser137Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-228114-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228114
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228111
    reference: chr 0
allele count: 1
allele frequency: 8.650219715580775e-6
allele num: 115604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.407_409delTCT
  hgvsp: ENSP00000316598.4:p.Phe136del
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1014_1016delTCT
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.405_407delTCT
  hgvsp: ENSP00000383537.3:p.Phe136del
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe136del
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: GAGA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

X-228120-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228120
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228120
    reference: chr 0
allele count: 1
allele frequency: 8.554759012438619e-6
allele num: 116894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.402C>G
  hgvsp: ENSP00000383537.3:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.404C>G
  hgvsp: ENSP00000316598.4:p.Ser135Cys
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1011C>G
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser135Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

X-228122-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228122
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228122
    reference: chr 0
allele count: 2
allele frequency: 1.707008978867229e-5
allele num: 117164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.400G>A
  hgvsp: ENST00000400701.3:c.400G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1009G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.402G>A
  hgvsp: ENST00000326153.4:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu134Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

X-228125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228125
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228125
    reference: chr 0
allele count: 2
allele frequency: 1.698513800424628e-5
allele num: 117750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.1006C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.397C>T
  hgvsp: ENST00000400701.3:c.397C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.399C>T
  hgvsp: ENST00000326153.4:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1940
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 907
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile133Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

X-228133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228133
    reference: chr 0
allele count: 1
allele frequency: 8.437536914224e-6
allele num: 118518
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.391G>A
  hgvsp: ENSP00000316598.4:p.Gly131Ser
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.998G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.389G>A
  hgvsp: ENSP00000383537.3:p.Gly131Ser
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6251
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 910
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 255
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 33968
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly131Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-228133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228133
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228133
    reference: chr 0
allele count: 2
allele frequency: 1.6875073828448e-5
allele num: 118518
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.391G>C
  hgvsp: ENSP00000316598.4:p.Gly131Arg
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.389G>C
  hgvsp: ENSP00000383537.3:p.Gly131Arg
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.998G>C
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2809
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genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly131Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

X-228134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228134
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228134
    reference: chr 0
allele count: 4
allele frequency: 3.371373666200293e-5
allele num: 118646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.390C>T
  hgvsp: ENST00000326153.4:c.390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.388C>T
  hgvsp: ENST00000400701.3:c.388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.997C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.His130His
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-228136-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228136
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228136
    reference: chr 0
allele count: 41
allele frequency: 3.451759555480721e-4
allele num: 118780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.995C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.386C>T
  hgvsp: ENSP00000383537.3:p.His130Tyr
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.388C>T
  hgvsp: ENSP00000316598.4:p.His130Tyr
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2727
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  variant carriers: 0
hgvs: p.His130Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-228137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228137
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228137
    reference: chr 0
allele count: 2
allele frequency: 1.683473342199626e-5
allele num: 118802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.385G>A
  hgvsp: ENST00000400701.3:c.385G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.994G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.387G>A
  hgvsp: ENST00000326153.4:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro129Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

X-228138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228138
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228138
    reference: chr 0
allele count: 12
allele frequency: 1.009115678293922e-4
allele num: 118916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.993C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.386C>T
  hgvsp: ENSP00000316598.4:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.384C>T
  hgvsp: ENSP00000383537.3:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro129Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
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X-228146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228146
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228146
    reference: chr 0
allele count: 11
allele frequency: 9.222462565186043e-5
allele num: 119274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.376C>T
  hgvsp: ENST00000400701.3:c.376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.985C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.378C>T
  hgvsp: ENST00000326153.4:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7297
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser126Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

X-228149-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228149
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228149
    reference: chr 0
allele count: 428
allele frequency: 3.585610642896637e-3
allele num: 119366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.375C>G
  hgvsp: ENST00000326153.4:c.375C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.982C>G
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.373C>G
  hgvsp: ENST00000400701.3:c.373C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7256
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  variant carriers: 1
hgvs: p.Leu125Leu
num of homozygotes: 7
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-228151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228151
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228151
    reference: chr 0
allele count: 3
allele frequency: 2.512478643931527e-5
allele num: 119404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.371C>T
  hgvsp: ENSP00000383537.3:p.Leu125Phe
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.980C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.373C>T
  hgvsp: ENSP00000316598.4:p.Leu125Phe
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 276
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu125Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-228158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228158
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228158
    reference: chr 0
allele count: 1
allele frequency: 8.354916868577158e-6
allele num: 119690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.364C>T
  hgvsp: ENST00000400701.3:c.364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.973C>T
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.366C>T
  hgvsp: ENST00000326153.4:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile122Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

X-228170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228170
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228170
    reference: chr 0
allele count: 20
allele frequency: 1.667361400583576e-4
allele num: 119950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.352C>T
  hgvsp: ENST00000400701.3:c.352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.354C>T
  hgvsp: ENST00000326153.4:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.961C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr118Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

X-228171-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228171
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228171
    reference: chr 0
allele count: 2
allele frequency: 1.667055646317474e-5
allele num: 119972
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.353A>C
  hgvsp: ENSP00000316598.4:p.Tyr118Ser
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.960A>C
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.351A>C
  hgvsp: ENSP00000383537.3:p.Tyr118Ser
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr118Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

X-228173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228173
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228173
    reference: chr 0
allele count: 2
allele frequency: 1.666666666666667e-5
allele num: 120000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.958G>A
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.349G>A
  hgvsp: ENST00000400701.3:c.349G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.351G>A
  hgvsp: ENST00000326153.4:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu117Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

X-228178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228178
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228178
    reference: chr 0
allele count: 50
allele frequency: 4.165139448868748e-4
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.346G>A
  hgvsp: ENSP00000316598.4:p.Val116Ile
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.344G>A
  hgvsp: ENSP00000383537.3:p.Val116Ile
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.953G>A
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val116Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

X-228179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228179
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228179
    reference: chr 0
allele count: 32
allele frequency: 2.664978846730404e-4
allele num: 120076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.343C>T
  hgvsp: ENST00000400701.3:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.345C>T
  hgvsp: ENST00000326153.4:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.952C>T
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5912
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr115Thr
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

X-228181-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24000228181
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24000228181
    reference: chr 0
allele count: 2
allele frequency: 1.665389867768044e-5
allele num: 120092
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000316598
  ensembl transcript: ENST00000326153
  gene symbol: GTPBP6
  hgvsc: ENST00000326153.4:c.343A>G
  hgvsp: ENSP00000316598.4:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178605
  ensembl protein: ENSP00000383537
  ensembl transcript: ENST00000400701
  gene symbol: GTPBP6
  hgvsc: ENST00000400701.3:c.341A>G
  hgvsp: ENSP00000383537.3:p.Thr115Ala
  variant of: http://identifiers.org/hgnc/30189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178605
  ensembl transcript: ENST00000485332
  gene symbol: GTPBP6
  hgvsc: ENST00000485332.2:n.950A>G
  variant of: http://identifiers.org/hgnc/30189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7452
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5906
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr115Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T

GenotypeQuality
all individuals: 2076
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.374098248024734e-3
allele num: 5822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 3.818e0

DP
type: SiteQuality
SIO_000300: 7.32011e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.685203909673071e-4
allele num: 5934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.32011e5

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

QD
type: SiteQuality
SIO_000300: 1.253e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

FS
type: SiteQuality
SIO_000300: 3.818e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
all individuals: 5628
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

QD
type: SiteQuality
SIO_000300: 2.056e1

DP
type: SiteQuality
SIO_000300: 7.32038e5

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 905
bin: 8.75e1
variant carriers: 881

East Asian
type: Population
allele count: 4368
allele frequency: 7.146596858638743e-1
allele num: 6112
num of homozygotes: 1545

South Asian
type: Population
allele count: 3381
allele frequency: 6.673904461113305e-1
allele num: 5066
num of homozygotes: 1103

African
type: Population
allele count: 3371
allele frequency: 5.517184942716857e-1
allele num: 6110
num of homozygotes: 890

Latino
type: Population
allele count: 5204
allele frequency: 7.352359423565979e-1
allele num: 7078
num of homozygotes: 1900

European (Finnish)
type: Population
allele count: 1204
allele frequency: 4.796812749003984e-1
allele num: 2510
num of homozygotes: 252

Other
type: Population
allele count: 199
allele frequency: 4.853658536585366e-1
allele num: 410
num of homozygotes: 43

European (Non-Finnish)
type: Population
allele count: 20260
allele frequency: 4.725254221475884e-1
allele num: 42876
num of homozygotes: 4480

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.669999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.12718e5

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.014e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41284
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

DP
type: SiteQuality
SIO_000300: 7.62198e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.651e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 589
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.421610894409088e-5
allele num: 29226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.606e0

MQ
type: SiteQuality
SIO_000300: 5.223e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 1.638e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 8.36101e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.061e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29226
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.765536723163842e-4
allele num: 11328
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.638e1

DP
type: SiteQuality
SIO_000300: 8.36101e5

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.223e1

FS
type: SiteQuality
SIO_000300: 6.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 655
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29796
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.247191011235955e-4
allele num: 4450
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2698
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

FS
type: SiteQuality
SIO_000300: 9.993e0

VQSLOD
type: SiteQuality
SIO_000300: -1.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 5.705e1

DP
type: SiteQuality
SIO_000300: 8.39828e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.758087201125176e-4
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2646
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.76e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.067e-1

DP
type: SiteQuality
SIO_000300: 8.5353e5

GenotypeQuality
all individuals: 756
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30132
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.544e1

VQSLOD
type: SiteQuality
SIO_000300: -8.445e-1

FS
type: SiteQuality
SIO_000300: 2.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

MQ
type: SiteQuality
SIO_000300: 5.675e1

DP
type: SiteQuality
SIO_000300: 8.62342e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

East Asian
type: Population
allele count: 37
allele frequency: 1.318602993585175e-2
allele num: 2806
num of homozygotes: 14

Latino
type: Population
allele count: 41
allele frequency: 1.474820143884892e-2
allele num: 2780
num of homozygotes: 14

Other
type: Population
allele count: 10
allele frequency: 2.487562189054726e-2
allele num: 402
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.91715976331361e-4
allele num: 1690
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 1.540492957746479e-2
allele num: 4544
num of homozygotes: 17

European (Non-Finnish)
type: Population
allele count: 178
allele frequency: 5.88741152345042e-3
allele num: 30234
num of homozygotes: 36

South Asian
type: Population
allele count: 302
allele frequency: 2.658450704225352e-2
allele num: 11360
num of homozygotes: 106

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.093e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

QD
type: SiteQuality
SIO_000300: 8.17e0

FS
type: SiteQuality
SIO_000300: 9.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 8.70861e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.273e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.027367401307823e-5
allele num: 33032
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.596e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.228e1

DP
type: SiteQuality
SIO_000300: 9.63868e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3448
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.9032006245121e-4
allele num: 5124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33032
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.63868e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.596e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 2.228e1

East Asian
type: Population
allele count: 36
allele frequency: 1.044083526682135e-2
allele num: 3448
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.878048780487805e-4
allele num: 2050
num of homozygotes: 0

South Asian
type: Population
allele count: 300
allele frequency: 3.048160942897785e-2
allele num: 9842
num of homozygotes: 105

Latino
type: Population
allele count: 41
allele frequency: 1.043256997455471e-2
allele num: 3930
num of homozygotes: 14

African
type: Population
allele count: 67
allele frequency: 1.307572209211554e-2
allele num: 5124
num of homozygotes: 16

Other
type: Population
allele count: 10
allele frequency: 2.427184466019417e-2
allele num: 412
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 177
allele frequency: 5.358440300314846e-3
allele num: 33032
num of homozygotes: 36

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 9.63868e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 2.228e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

MQ
type: SiteQuality
SIO_000300: 5.596e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.900232018561485e-4
allele num: 3448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 2.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 9.63868e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.596e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 404
bin: 7.25e1
variant carriers: 292

Latino
type: Population
allele count: 2663
allele frequency: 6.776081424936387e-1
allele num: 3930
num of homozygotes: 891

East Asian
type: Population
allele count: 1902
allele frequency: 5.516241299303944e-1
allele num: 3448
num of homozygotes: 496

European (Finnish)
type: Population
allele count: 888
allele frequency: 4.331707317073171e-1
allele num: 2050
num of homozygotes: 176

Other
type: Population
allele count: 164
allele frequency: 3.980582524271845e-1
allele num: 412
num of homozygotes: 27

African
type: Population
allele count: 3122
allele frequency: 6.092896174863388e-1
allele num: 5124
num of homozygotes: 908

European (Non-Finnish)
type: Population
allele count: 12768
allele frequency: 3.865342697989828e-1
allele num: 33032
num of homozygotes: 2114

South Asian
type: Population
allele count: 5013
allele frequency: 5.093476935582198e-1
allele num: 9842
num of homozygotes: 1320

MQ
type: SiteQuality
SIO_000300: 5.596e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 2.228e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 9.63868e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.241e0

VQSLOD
type: SiteQuality
SIO_000300: -7.149999999999999e-2

DP
type: SiteQuality
SIO_000300: 9.89065e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.836e1

GenotypeQuality
all individuals: 3500
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 3.892565200467108e-4
allele num: 5138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.149999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 1.241e0

DP
type: SiteQuality
SIO_000300: 9.89065e5

MQ
type: SiteQuality
SIO_000300: 5.836e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-2

GenotypeQuality
all individuals: 239
bin: 5.75e1
variant carriers: 14

European (Non-Finnish)
type: Population
allele count: 437
allele frequency: 1.340161923454367e-2
allele num: 32608
num of homozygotes: 4

African
type: Population
allele count: 82
allele frequency: 1.595951732191514e-2
allele num: 5138
num of homozygotes: 1

East Asian
type: Population
allele count: 6
allele frequency: 1.800720288115246e-3
allele num: 3332
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 9.526401741970605e-3
allele num: 3674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 8.105369807497468e-3
allele num: 1974
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.886792452830189e-2
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 69
allele frequency: 6.083583142302945e-3
allele num: 11342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

DP
type: SiteQuality
SIO_000300: 9.89065e5

MQ
type: SiteQuality
SIO_000300: 5.836e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 1.241e0

VQSLOD
type: SiteQuality
SIO_000300: -7.149999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.451e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.194535348813049e-5
allele num: 38502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.751937984496124e-5
allele num: 12900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.219e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.994e1

DP
type: SiteQuality
SIO_000300: 9.99911e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 3.395e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 7.198683669271905e-4
allele num: 38896
num of homozygotes: 1

African
type: Population
allele count: 535
allele frequency: 8.994620040349698e-2
allele num: 5948
num of homozygotes: 24

South Asian
type: Population
allele count: 161
allele frequency: 1.238842720837181e-2
allele num: 12996
num of homozygotes: 6

East Asian
type: Population
allele count: 134
allele frequency: 3.07057745187901e-2
allele num: 4364
num of homozygotes: 1

Other
type: Population
allele count: 7
allele frequency: 1.388888888888889e-2
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 6.483300589390962e-3
allele num: 5090
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.803e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 1.271e0

DP
type: SiteQuality
SIO_000300: 1.01191e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 615
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.29147571035747e-4
allele num: 4364
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.308402585410896e-4
allele num: 12996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.964636542239686e-4
allele num: 5090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.141916906622789e-5
allele num: 38896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 1.271e0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 1.01191e6

QD
type: SiteQuality
SIO_000300: 1.803e1

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.92e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 609
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 24
allele frequency: 2.043596730245231e-3
allele num: 11744
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.018848700967906e-3
allele num: 3926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 6.088368317290966e-4
allele num: 34492
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.62844702467344e-4
allele num: 5512
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.371365880416895e-3
allele num: 3646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.71e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.633e0

MQ
type: SiteQuality
SIO_000300: 5.575e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 4.293e0

DP
type: SiteQuality
SIO_000300: 1.021713e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

GenotypeQuality
all individuals: 4012
bin: 7.5e0
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 6.304808849658967e-4
allele num: 34894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.008064516129032e-3
allele num: 3968
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.594536304816679e-4
allele num: 5564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

East Asian
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allele frequency: 1.353546291283162e-3
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South Asian
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allele frequency: 2.026000337666723e-3
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 2.532500422083403e-4
allele num: 11846
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African
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East Asian
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allele frequency: 2.707092582566324e-4
allele num: 3694
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 452
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Latino
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allele frequency: 2.520161290322581e-4
allele num: 3968
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European (Non-Finnish)
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allele frequency: 5.731644408780879e-5
allele num: 34894
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
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QD
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2674
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East Asian
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Other
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 5.728e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
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variant carriers: 0

Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 40986
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Other
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East Asian
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South Asian
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African
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European (Finnish)
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FS
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ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

East Asian
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allele frequency: 2.113271344040575e-4
allele num: 4732
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Latino
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allele frequency: 1.810282404055032e-4
allele num: 5524
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South Asian
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allele frequency: 2.261420171867933e-4
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.879715024642561e-5
allele num: 40986
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.47e0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2420
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Latino
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allele frequency: 2.239140170174653e-4
allele num: 4466
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Other
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allele num: 480
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South Asian
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DP
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SIO_000300: 1.085065e6

MQ
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.251e0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 2.909437156157427e-4
allele num: 37808
num of homozygotes: 0

South Asian
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allele frequency: 9.715025906735751e-4
allele num: 12352
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Latino
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allele count: 3
allele frequency: 6.717420510523958e-4
allele num: 4466
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East Asian
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allele count: 2
allele frequency: 4.870920603994155e-4
allele num: 4106
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2420
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African
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allele count: 2
allele frequency: 3.385240352064996e-4
allele num: 5908
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.62e1

ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 1.085065e6

GenotypeQuality
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variant carriers: 0

Latino
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allele count: 3
allele frequency: 6.587615283267457e-4
allele num: 4554
num of homozygotes: 0

East Asian
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allele frequency: 4.82392667631452e-4
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African
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allele frequency: 3.363605785401951e-4
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Other
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European (Non-Finnish)
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allele frequency: 2.89199705542118e-4
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South Asian
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allele frequency: 9.643201542912247e-4
allele num: 12444
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQ
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FS
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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VQSLOD
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QD
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ReadPosRankSum
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DP
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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VQSLOD
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DP
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MQ
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ClippingRankSum
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FS
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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Other
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Latino
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European (Non-Finnish)
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African
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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allele frequency: 8.599124452782989e-4
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Latino
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East Asian
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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GenotypeQuality
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Latino
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African
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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MQ
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

QD
type: SiteQuality
SIO_000300: 2.218e1

GenotypeQuality
all individuals: 4965
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 4
allele frequency: 3.029385034837928e-4
allele num: 13204
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.095975232198143e-4
allele num: 6460
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.035002035002035e-4
allele num: 4914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.516734093416697e-4
allele num: 5438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.163061177017911e-4
allele num: 42990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.843e0

FS
type: SiteQuality
SIO_000300: 2.189e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

MQ
type: SiteQuality
SIO_000300: 5.686e1

QD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.762e0

DP
type: SiteQuality
SIO_000300: 1.167701e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.523e0

GenotypeQuality
all individuals: 894
bin: 4.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.211900022119e-5
allele num: 45210
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.458789204959883e-4
allele num: 13710
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.961208172934557e-4
allele num: 6754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 1.189002e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

MQ
type: SiteQuality
SIO_000300: 5.871e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

GenotypeQuality
all individuals: 1217
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

African
type: Population
allele count: 65
allele frequency: 9.62392656203731e-3
allele num: 6754
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 3.094462540716612e-3
allele num: 6140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 9.732360097323601e-4
allele num: 45210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.531728665207877e-3
allele num: 13710
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.31e-2

DP
type: SiteQuality
SIO_000300: 1.189002e6

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: 5.07e0

GenotypeQuality
all individuals: 876
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.97000297000297e-4
allele num: 6734
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 7.593014426727411e-4
allele num: 5268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.54327792230698e-4
allele num: 45358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.214524e6

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 3.323e1

GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.449695563931574e-4
allele num: 6898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.591277606933184e-4
allele num: 7154
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.531073446327684e-4
allele num: 14160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.041873812699567e-5
allele num: 49482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.002e0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.039e0

QD
type: SiteQuality
SIO_000300: 1.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 1.287839e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50700
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.930967563071805e-5
allele num: 14428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 1.408e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.307582e6

QD
type: SiteQuality
SIO_000300: 9.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

GenotypeQuality
all individuals: 867
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.76243093922652e-4
allele num: 7240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.435728e6

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

FS
type: SiteQuality
SIO_000300: 4.059e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 475
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.75364758698092e-5
allele num: 57024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

FS
type: SiteQuality
SIO_000300: 4.059e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

DP
type: SiteQuality
SIO_000300: 1.435728e6

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
all individuals: 5429
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.435834727764191e-5
allele num: 15538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.899e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 9.41e0

FS
type: SiteQuality
SIO_000300: 8.081e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

DP
type: SiteQuality
SIO_000300: 1.480276e6

GenotypeQuality
all individuals: 347
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.697447039652363e-5
allele num: 58912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.081e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.899e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.480276e6

QD
type: SiteQuality
SIO_000300: 9.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

GenotypeQuality
all individuals: 5162
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.344116268166901e-4
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664391997603276e-5
allele num: 60082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 6.516e0

DP
type: SiteQuality
SIO_000300: 1.507299e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 5816
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.270648030495553e-4
allele num: 15740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 3.549e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 1.517906e6

GenotypeQuality
all individuals: 503
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.256281407035176e-4
allele num: 7960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.668e0

FS
type: SiteQuality
SIO_000300: 1.789e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.533775e6

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6352
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 1.592255270364945e-5
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
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Latino
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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FS
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MQ
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QD
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BaseQRankSum
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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South Asian
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African
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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African
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Other
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East Asian
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InbreedingCoeff
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 3

African
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allele frequency: 1.098418277680141e-4
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European (Non-Finnish)
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Latino
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allele num: 10918
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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FS
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.559965056782728e-5
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Other
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South Asian
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Latino
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European (Finnish)
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African
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East Asian
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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South Asian
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Latino
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East Asian
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African
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Other
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European (Non-Finnish)
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BaseQRankSum
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FS
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MQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Other
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South Asian
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European (Finnish)
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Latino
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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FS
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DP
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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VQSLOD
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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Other
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South Asian
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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DP
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QD
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VQSLOD
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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Other
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.072382803011902e-5
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European (Non-Finnish)
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allele frequency: 1.525180733916969e-5
allele num: 65566
num of homozygotes: 0

VQSLOD
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16472
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.57205559619605e-5
allele num: 65616
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

East Asian
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allele frequency: 1.165772907437631e-4
allele num: 8578
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Latino
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allele frequency: 7.010164738871364e-4
allele num: 11412
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
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FS
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QD
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VQSLOD
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele frequency: 3.495281370150297e-4
allele num: 11444
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.064153238066281e-4
allele num: 65780
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African
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South Asian
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 1.673355e6

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
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Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

Latino
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allele count: 18
allele frequency: 1.570680628272251e-3
allele num: 11460
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African
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allele count: 403
allele frequency: 4.165805251188753e-2
allele num: 9674
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.21256214380987e-4
allele num: 16494
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.079951360389117e-5
allele num: 65790
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 1.453e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.694351e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.818843215714805e-4
allele num: 16494
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11462
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65814
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East Asian
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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FS
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.3554e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.561e1

DP
type: SiteQuality
SIO_000300: 1.695456e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.567731194187983e-5
allele num: 66070
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 4.241396025206011e-4
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African
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allele frequency: 1.021867974657674e-4
allele num: 9786
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Other
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allele frequency: 5.617977528089887e-3
allele num: 890
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Latino
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allele frequency: 1.736111111111111e-4
allele num: 11520
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.026909222992402e-5
allele num: 66074
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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Latino
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African
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 3.035822707953856e-4
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European (Non-Finnish)
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allele frequency: 6.503720733256701e-4
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African
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South Asian
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Latino
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele frequency: 1.058489082441178e-4
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East Asian
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African
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Other
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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FS
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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South Asian
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