X-149013748-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013748
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013748
    reference: chr 0
allele count: 1
allele frequency: 1.167119898227145e-5
allele num: 85681
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.702T>C
  hgvsp: ENST00000286482.1:c.702T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.702T>C
  hgvsp: ENST00000542674.1:c.702T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.702T>C
  hgvsp: ENST00000535454.1:c.702T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
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  variant carriers: 0
hgvs: p.Tyr234Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

X-149013751-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013751
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013751
    reference: chr 0
allele count: 2
allele frequency: 2.336011960381237e-5
allele num: 85616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.705T>C
  hgvsp: ENST00000535454.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.705T>C
  hgvsp: ENST00000286482.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.705T>C
  hgvsp: ENST00000542674.1:c.705T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 72
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  variant carriers: 0
hgvs: p.Asp235Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-149013771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013771
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013771
    reference: chr 0
allele count: 1
allele frequency: 1.170809380524757e-5
allele num: 85411
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.725A>G
  hgvsp: ENSP00000286482.1:p.Tyr242Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.725A>G
  hgvsp: ENSP00000443776.1:p.Tyr242Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.725A>G
  hgvsp: ENSP00000438293.1:p.Tyr242Cys
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 538
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  variant carriers: 0
hgvs: p.Tyr242Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

X-149013772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013772
    reference: chr 0
allele count: 1
allele frequency: 1.171111033037042e-5
allele num: 85389
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.726T>C
  hgvsp: ENST00000535454.1:c.726T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.726T>C
  hgvsp: ENST00000542674.1:c.726T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.726T>C
  hgvsp: ENST00000286482.1:c.726T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1983
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  variant carriers: 0
hgvs: p.Tyr242Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-149013788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013788
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013788
    reference: chr 0
allele count: 3
allele frequency: 3.518153672952434e-5
allele num: 85272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.742C>T
  hgvsp: ENST00000542674.1:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.742C>T
  hgvsp: ENST00000535454.1:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.742C>T
  hgvsp: ENST00000286482.1:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30393
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Leu248Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-149013793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013793
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013793
    reference: chr 0
allele count: 1
allele frequency: 1.172607879924953e-5
allele num: 85280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.747C>T
  hgvsp: ENST00000286482.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.747C>T
  hgvsp: ENST00000535454.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.747C>T
  hgvsp: ENST00000542674.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4198
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30393
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu249Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-149013803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013803
    reference: chr 0
allele count: 1
allele frequency: 1.171714804616556e-5
allele num: 85345
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.757T>C
  hgvsp: ENSP00000438293.1:p.Trp253Arg
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.757T>C
  hgvsp: ENSP00000286482.1:p.Trp253Arg
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.757T>C
  hgvsp: ENSP00000443776.1:p.Trp253Arg
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2049
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genotype quality: GenotypeQuality
  all individuals: 225
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  variant carriers: 0
hgvs: p.Trp253Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

X-149013835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013835
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013835
    reference: chr 0
allele count: 1
allele frequency: 1.163900463232384e-5
allele num: 85918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.789G>A
  hgvsp: ENST00000286482.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.789G>A
  hgvsp: ENST00000535454.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.789G>A
  hgvsp: ENST00000542674.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30393
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln263Gln
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS

X-149013838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013838
    reference: chr 0
allele count: 2
allele frequency: 2.326014142165985e-5
allele num: 85984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.792G>A
  hgvsp: ENST00000535454.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.792G>A
  hgvsp: ENST00000542674.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.792G>A
  hgvsp: ENST00000286482.1:c.792G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30391
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala264Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

X-149013841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013841
    reference: chr 0
allele count: 3
allele frequency: 3.483430482339007e-5
allele num: 86122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.795C>T
  hgvsp: ENST00000542674.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.795C>T
  hgvsp: ENST00000535454.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.795C>T
  hgvsp: ENST00000286482.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7523
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 0
hgvs: p.Pro265Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-149013842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013842
    reference: chr 0
allele count: 2
allele frequency: 2.320724065908563e-5
allele num: 86180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.796G>A
  hgvsp: ENSP00000443776.1:p.Gly266Ser
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.796G>A
  hgvsp: ENSP00000438293.1:p.Gly266Ser
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.796G>A
  hgvsp: ENSP00000286482.1:p.Gly266Ser
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly266Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-149013843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013843
    reference: chr 0
allele count: 1
allele frequency: 1.159527840263445e-5
allele num: 86242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.797G>A
  hgvsp: ENSP00000286482.1:p.Gly266Asp
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.797G>A
  hgvsp: ENSP00000443776.1:p.Gly266Asp
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.797G>A
  hgvsp: ENSP00000438293.1:p.Gly266Asp
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7577
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly266Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

X-149013857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013857
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013857
    reference: chr 0
allele count: 1
allele frequency: 1.154507775609869e-5
allele num: 86617
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.811C>T
  hgvsp: ENSP00000443776.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.811C>T
  hgvsp: ENSP00000438293.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.811C>T
  hgvsp: ENSP00000286482.1:p.Arg271Cys
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6656
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg271Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-149013877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013877
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013877
    reference: chr 0
allele count: 1
allele frequency: 1.151436993367723e-5
allele num: 86848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.831T>C
  hgvsp: ENST00000542674.1:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.831T>C
  hgvsp: ENST00000535454.1:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.831T>C
  hgvsp: ENST00000286482.1:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2050
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genotype quality: GenotypeQuality
  all individuals: 30388
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly277Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-149013895-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013895
    reference: chr 0
allele count: 821
allele frequency: 9.464631559531495e-3
allele num: 86744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.849A>G
  hgvsp: ENST00000535454.1:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.849A>G
  hgvsp: ENST00000542674.1:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.849A>G
  hgvsp: ENST00000286482.1:c.849A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
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  variant carriers: 10
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13284
  bin: 6.25e1
  variant carriers: 16
hgvs: p.Glu283Glu
num of homozygotes: 5
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

X-149013917-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013917
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013917
    reference: chr 0
allele count: 6
allele frequency: 6.981208912676711e-5
allele num: 85945
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.871G>C
  hgvsp: ENSP00000438293.1:p.Glu291Gln
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.871G>C
  hgvsp: ENSP00000443776.1:p.Glu291Gln
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.871G>C
  hgvsp: ENSP00000286482.1:p.Glu291Gln
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu291Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

X-149013918-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013918
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013918
    reference: chr 0
allele count: 16
allele frequency: 1.862305767328173e-4
allele num: 85915
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.872A>C
  hgvsp: ENSP00000443776.1:p.Glu291Ala
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.872A>C
  hgvsp: ENSP00000438293.1:p.Glu291Ala
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.872A>C
  hgvsp: ENSP00000286482.1:p.Glu291Ala
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu291Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

X-149013936-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013936
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013936
    reference: chr 0
allele count: 1
allele frequency: 1.177565031028839e-5
allele num: 84921
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.890A>G
  hgvsp: ENSP00000286482.1:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.890A>G
  hgvsp: ENSP00000438293.1:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.890A>G
  hgvsp: ENSP00000443776.1:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn297Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-149013948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013948
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013948
    reference: chr 0
allele count: 13
allele frequency: 1.548374801986684e-4
allele num: 83959
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.902G>A
  hgvsp: ENSP00000443776.1:p.Arg301His
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.902G>A
  hgvsp: ENSP00000286482.1:p.Arg301His
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.902G>A
  hgvsp: ENSP00000438293.1:p.Arg301His
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1995
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30161
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genotype quality: GenotypeQuality
  all individuals: 10191
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  variant carriers: 0
hgvs: p.Arg301His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

X-149013949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013949
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013949
    reference: chr 0
allele count: 1
allele frequency: 1.193175038778189e-5
allele num: 83810
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.903C>T
  hgvsp: ENST00000535454.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.903C>T
  hgvsp: ENST00000542674.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.903C>T
  hgvsp: ENST00000286482.1:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4023
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg301Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

X-149013956-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013956
    reference: chr 0
allele count: 1
allele frequency: 1.201432107071629e-5
allele num: 83234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.910T>C
  hgvsp: ENSP00000286482.1:p.Tyr304His
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.910T>C
  hgvsp: ENSP00000443776.1:p.Tyr304His
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.910T>C
  hgvsp: ENSP00000438293.1:p.Tyr304His
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1139
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2754
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr304His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

X-149013957-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013957
    reference: chr 0
allele count: 1
allele frequency: 1.202024208767565e-5
allele num: 83193
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.911A>G
  hgvsp: ENSP00000443776.1:p.Tyr304Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.911A>G
  hgvsp: ENSP00000286482.1:p.Tyr304Cys
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.911A>G
  hgvsp: ENSP00000438293.1:p.Tyr304Cys
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2069
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  variant carriers: 0
hgvs: p.Tyr304Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-149013963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013963
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013963
    reference: chr 0
allele count: 1393
allele frequency: 1.68556320559515e-2
allele num: 82643
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.917C>T
  hgvsp: ENSP00000443776.1:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.917C>T
  hgvsp: ENSP00000286482.1:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.917C>T
  hgvsp: ENSP00000438293.1:p.Ser306Phe
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3519
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30328
  bin: 9.75e1
  variant carriers: 1343
hgvs: p.Ser306Phe
num of homozygotes: 73
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-149013964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013964
    reference: chr 0
allele count: 293
allele frequency: 3.550482283941641e-3
allele num: 82524
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.918C>T
  hgvsp: ENST00000535454.1:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.918C>T
  hgvsp: ENST00000542674.1:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.918C>T
  hgvsp: ENST00000286482.1:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  variant carriers: 195
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9410
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser306Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

X-149013978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013978
    reference: chr 0
allele count: 2
allele frequency: 2.460872133083965e-5
allele num: 81272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.932C>T
  hgvsp: ENSP00000438293.1:p.Ala311Val
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.932C>T
  hgvsp: ENSP00000443776.1:p.Ala311Val
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.932C>T
  hgvsp: ENSP00000286482.1:p.Ala311Val
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29917
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala311Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-149013988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013988
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013988
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 80504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.942G>A
  hgvsp: ENST00000542674.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.942G>A
  hgvsp: ENST00000286482.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.942G>A
  hgvsp: ENST00000535454.1:c.942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu314Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
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X-149013994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149013994
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149013994
    reference: chr 0
allele count: 2
allele frequency: 2.497533685485583e-5
allele num: 80079
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.948A>G
  hgvsp: ENST00000286482.1:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.948A>G
  hgvsp: ENST00000535454.1:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.948A>G
  hgvsp: ENST00000542674.1:c.948A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Lys316Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-149014003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014003
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014003
    reference: chr 0
allele count: 1
allele frequency: 1.257576900827486e-5
allele num: 79518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.957A>G
  hgvsp: ENSP00000286482.1:p.Ter319TrpextTer42
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.957A>G
  hgvsp: ENSP00000438293.1:p.Ter319TrpextTer42
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.957A>G
  hgvsp: ENSP00000443776.1:p.Ter319TrpextTer42
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4008
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ter319TrpextTer42
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-149014004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014004
    reference: chr 0
allele count: 8
allele frequency: 1.010802956598648e-4
allele num: 79145
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
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  consequence: 3_prime_UTR_variant
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  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
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  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
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site quality: MQ
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X-149014018-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014018
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014018
    reference: chr 0
allele count: 1
allele frequency: 1.272653227448585e-5
allele num: 78576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.*15T>C
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*15T>C
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*15T>C
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
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site quality: DP
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site quality: VQSLOD
site quality: ClippingRankSum
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X-149014020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014020
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014020
    reference: chr 0
allele count: 1
allele frequency: 1.275738014441354e-5
allele num: 78386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*17G>C
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.*17G>C
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
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  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*17G>C
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
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site quality: DP
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site quality: InbreedingCoeff
site quality: BaseQRankSum
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X-149014022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014022
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014022
    reference: chr 0
allele count: 2
allele frequency: 2.551573683069033e-5
allele num: 78383
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
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  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
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site quality: InbreedingCoeff
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site quality: MQRankSum
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X-149014023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014023
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014023
    reference: chr 0
allele count: 2
allele frequency: 2.550987870052678e-5
allele num: 78401
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

X-149014046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149014046
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149014046
    reference: chr 0
allele count: 1
allele frequency: 1.280819724623759e-5
allele num: 78075
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000286482
  ensembl transcript: ENST00000286482
  gene symbol: MAGEA8
  hgvsc: ENST00000286482.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000443776
  ensembl transcript: ENST00000542674
  gene symbol: MAGEA8
  hgvsc: ENST00000542674.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/6806
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000156009
  ensembl protein: ENSP00000438293
  ensembl transcript: ENST00000535454
  gene symbol: MAGEA8
  hgvsc: ENST00000535454.1:c.*43G>A
  variant of: http://identifiers.org/hgnc/6806
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

X-149098260-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149098260
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149098260
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.*31T>C
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000224871
  ensembl transcript: ENST00000457775
  gene symbol: XX-FW81066F1.2
  hgvsc: ENST00000457775.1:n.381A>G
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 142
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

X-149098349-A-AAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149098349
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149098352
    reference: chr 0
allele count: 236
allele frequency: 2.932405566600398e-2
allele num: 8048
alternate allele: AAGT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000224871
  ensembl transcript: ENST00000457775
  gene symbol: XX-FW81066F1.2
  hgvsc: ENST00000457775.1:n.466+7_466+9dupTAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.433-53_433-51dupACT
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
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  variant carriers: 7
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 109
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  variant carriers: 1
hgvs: n.466+7_466+9dupTAG
num of homozygotes: 6
population: European (Finnish)
  type: Population
  allele count: 83
  allele frequency: 6.709781729991916e-2
  allele num: 1237
  num of homozygotes: 4
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

X-149100711-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100711
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100711
    reference: chr 0
allele count: 16
allele frequency: 1.948652993618161e-4
allele num: 82108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+96G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*51G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*51G>A
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31267
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

X-149100724-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100724
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100724
    reference: chr 0
allele count: 12
allele frequency: 1.380849913121526e-4
allele num: 86903
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*38C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*38C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+83C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*38C>G
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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  variant carriers: 7
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 166
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 12
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7131
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45052
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS

X-149100728-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100728
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100728
    reference: chr 0
allele count: 1
allele frequency: 1.148791471372116e-5
allele num: 87048
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*34A>C
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*34A>C
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*34A>C
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+79A>C
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
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genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 875
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 650
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-149100733-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100733
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100733
    reference: chr 0
allele count: 1
allele frequency: 1.145711601475677e-5
allele num: 87282
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*29C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*29C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*29C>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+74C>G
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 143
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  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-149100740-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100740
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100740
    reference: chr 0
allele count: 1
allele frequency: 1.142883265903221e-5
allele num: 87498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*22A>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*22A>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*22A>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+67A>T
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 14058
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-149100746-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100746
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100746
    reference: chr 0
allele count: 1
allele frequency: 1.141344046749452e-5
allele num: 87616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*16G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+61G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*16G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*16G>T
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 886
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

X-149100747-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100747
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87637
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*15T>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*15T>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*15T>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+60T>G
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

X-149100749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100749
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100749
    reference: chr 0
allele count: 14
allele frequency: 1.596970319165925e-4
allele num: 87666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+58C>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*13C>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*13C>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*13C>T
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

X-149100753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100753
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100753
    reference: chr 0
allele count: 1
allele frequency: 1.140263857056523e-5
allele num: 87699
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*9G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+54G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*9G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*9G>A
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14130
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

X-149100754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100754
    reference: chr 0
allele count: 1
allele frequency: 1.140237853616264e-5
allele num: 87701
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*8G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+53G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 888
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  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

X-149100758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100758
    reference: chr 0
allele count: 1
allele frequency: 1.140016872249709e-5
allele num: 87718
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*4G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*4G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*4G>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+49G>T
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

X-149100758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100758
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100758
    reference: chr 0
allele count: 81
allele frequency: 9.234136665222646e-4
allele num: 87718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*4G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+49G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*4G>A
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
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X-149100759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100759
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100759
    reference: chr 0
allele count: 2
allele frequency: 2.279981760145919e-5
allele num: 87720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.*3A>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.*3A>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.*3A>G
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+48A>G
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-149100762-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100762
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100761
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.476delG
  hgvsp: ENSP00000347339.2:p.Ter159Tyr
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+44delG
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.476delG
  hgvsp: ENSP00000359432.1:p.Ter159Tyr
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.476delG
  hgvsp: ENSP00000359434.3:p.Ter159Tyr
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47484
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ter159Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: TC
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

X-149100767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100767
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100767
    reference: chr 0
allele count: 1
allele frequency: 1.139769994415127e-5
allele num: 87737
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.472G>C
  hgvsp: ENSP00000359432.1:p.Val158Leu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+40G>C
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.472G>C
  hgvsp: ENSP00000359434.3:p.Val158Leu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.472G>C
  hgvsp: ENSP00000347339.2:p.Val158Leu
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7318
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val158Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

X-149100775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100775
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100775
    reference: chr 0
allele count: 636
allele frequency: 7.248111046531505e-3
allele num: 87747
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.464G>A
  hgvsp: ENSP00000359432.1:p.Gly155Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.464G>A
  hgvsp: ENSP00000359434.3:p.Gly155Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+32G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.464G>A
  hgvsp: ENSP00000347339.2:p.Gly155Glu
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 22927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 166
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly155Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-149100781-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100781
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100781
    reference: chr 0
allele count: 91
allele frequency: 1.03704885525761e-3
allele num: 87749
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+26C>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.458C>A
  hgvsp: ENSP00000359432.1:p.Pro153His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.458C>A
  hgvsp: ENSP00000347339.2:p.Pro153His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.458C>A
  hgvsp: ENSP00000359434.3:p.Pro153His
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3952
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro153His
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-149100791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100791
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.448C>T
  hgvsp: ENSP00000359434.3:p.His150Tyr
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+16C>T
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.448C>T
  hgvsp: ENSP00000359432.1:p.His150Tyr
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.448C>T
  hgvsp: ENSP00000347339.2:p.His150Tyr
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
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genotype depth: GenotypeDepth
  all individuals: 191
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 471
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48053
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genotype quality: GenotypeQuality
  all individuals: 164
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His150Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-149100792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100792
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100792
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.447G>A
  hgvsp: ENST00000370406.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.447G>A
  hgvsp: ENST00000355203.2:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.447G>A
  hgvsp: ENST00000370404.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+15G>A
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7385
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu149Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-149100794-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100794
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100794
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87750
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.445G>C
  hgvsp: ENSP00000359434.3:p.Glu149Gln
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.445G>C
  hgvsp: ENSP00000359432.1:p.Glu149Gln
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.445G>C
  hgvsp: ENSP00000347339.2:p.Glu149Gln
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+13G>C
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23272
  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
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genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
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genotype depth: GenotypeDepth
  all individuals: 470
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1115
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
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  variant carriers: 1
hgvs: p.Glu149Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

X-149100803-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100803
    reference: chr 0
allele count: 1
allele frequency: 1.139588152841563e-5
allele num: 87751
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.436G>C
  hgvsp: ENSP00000359434.3:p.Asp146His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.436G>C
  hgvsp: ENSP00000474324.1:p.Asp146His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.436G>C
  hgvsp: ENSP00000359432.1:p.Asp146His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.436G>C
  hgvsp: ENSP00000347339.2:p.Asp146His
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+4G>C
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14377
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
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genotype depth: GenotypeDepth
  all individuals: 355
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp146His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

X-149100806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100806
    reference: chr 0
allele count: 1
allele frequency: 1.139575166377974e-5
allele num: 87752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.433G>A
  hgvsp: ENSP00000359432.1:p.Val145Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.433G>A
  hgvsp: ENSP00000359434.3:p.Val145Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.433G>A
  hgvsp: ENSP00000347339.2:p.Val145Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.432+1G>A
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.433G>A
  hgvsp: ENSP00000474324.1:p.Val145Ile
  variant of: http://identifiers.org/hgnc/17402
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7384
  bin: 6.75e1
  variant carriers: 0
hgvs: c.432+1G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-149100823-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100823
    reference: chr 0
allele count: 1
allele frequency: 1.139536208763033e-5
allele num: 87755
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.416G>T
  hgvsp: ENSP00000474324.1:p.Gly139Val
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.416G>T
  hgvsp: ENSP00000417546.1:p.Gly139Val
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.416G>T
  hgvsp: ENSP00000359434.3:p.Gly139Val
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.416G>T
  hgvsp: ENSP00000359432.1:p.Gly139Val
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.416G>T
  hgvsp: ENSP00000347339.2:p.Gly139Val
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2572
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly139Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

X-149100826-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100826
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100826
    reference: chr 0
allele count: 2
allele frequency: 2.279098388677439e-5
allele num: 87754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.413G>C
  hgvsp: ENSP00000417546.1:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.413G>C
  hgvsp: ENSP00000474324.1:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.413G>C
  hgvsp: ENSP00000359432.1:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.413G>C
  hgvsp: ENSP00000347339.2:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.413G>C
  hgvsp: ENSP00000359434.3:p.Gly138Ala
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gly138Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

X-149100831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100831
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100831
    reference: chr 0
allele count: 1
allele frequency: 1.13960113960114e-5
allele num: 87750
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.408G>A
  hgvsp: ENST00000370406.3:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.408G>A
  hgvsp: ENST00000462691.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.408G>A
  hgvsp: ENST00000370404.1:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.408G>A
  hgvsp: ENST00000370409.3:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.408G>A
  hgvsp: ENST00000355203.2:c.408G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg136Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-149100833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100833
    reference: chr 0
allele count: 1
allele frequency: 1.139640101655897e-5
allele num: 87747
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.406A>G
  hgvsp: ENSP00000359432.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.406A>G
  hgvsp: ENSP00000347339.2:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.406A>G
  hgvsp: ENSP00000359434.3:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.406A>G
  hgvsp: ENSP00000417546.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.406A>G
  hgvsp: ENSP00000474324.1:p.Arg136Gly
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7378
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg136Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

X-149100836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100836
    reference: chr 0
allele count: 5
allele frequency: 5.698785019033942e-5
allele num: 87738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.403C>T
  hgvsp: ENSP00000417546.1:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.403C>T
  hgvsp: ENSP00000347339.2:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.403C>T
  hgvsp: ENSP00000474324.1:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.403C>T
  hgvsp: ENSP00000359434.3:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.403C>T
  hgvsp: ENSP00000359432.1:p.Pro135Ser
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro135Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

X-149100840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100840
    reference: chr 0
allele count: 3
allele frequency: 3.419621789830045e-5
allele num: 87729
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.399C>T
  hgvsp: ENST00000370404.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.399C>T
  hgvsp: ENST00000370409.3:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.399C>T
  hgvsp: ENST00000355203.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.399C>T
  hgvsp: ENST00000462691.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.399C>T
  hgvsp: ENST00000370406.3:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14381
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23280
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47936
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Pro133Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-149100843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100843
    reference: chr 0
allele count: 22
allele frequency: 2.508265876182875e-4
allele num: 87710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.396G>A
  hgvsp: ENST00000370409.3:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.396G>A
  hgvsp: ENST00000370404.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.396G>A
  hgvsp: ENST00000370406.3:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.396G>A
  hgvsp: ENST00000355203.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.396G>A
  hgvsp: ENST00000462691.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu132Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-149100848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100848
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100848
    reference: chr 0
allele count: 1
allele frequency: 1.140328870846352e-5
allele num: 87694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.391C>T
  hgvsp: ENST00000370409.3:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.391C>T
  hgvsp: ENST00000370406.3:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.391C>T
  hgvsp: ENST00000462691.1:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.391C>T
  hgvsp: ENST00000370404.1:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.391C>T
  hgvsp: ENST00000355203.2:c.391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu131Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-149100850-AACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100850
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100847
    reference: chr 0
allele count: 1
allele frequency: 1.140315867495296e-5
allele num: 87695
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.386_388delGGT
  hgvsp: ENSP00000359434.3:p.Trp129del
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.386_388delGGT
  hgvsp: ENSP00000474324.1:p.Trp129del
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.386_388delGGT
  hgvsp: ENSP00000417546.1:p.Trp129del
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.386_388delGGT
  hgvsp: ENSP00000359432.1:p.Trp129del
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.386_388delGGT
  hgvsp: ENSP00000347339.2:p.Trp129del
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp129del
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: AACC
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

X-149100852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100852
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100852
    reference: chr 0
allele count: 1
allele frequency: 1.140328870846352e-5
allele num: 87694
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.387G>A
  hgvsp: ENSP00000359434.3:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.387G>A
  hgvsp: ENSP00000347339.2:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.387G>A
  hgvsp: ENSP00000359432.1:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.387G>A
  hgvsp: ENSP00000474324.1:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.387G>A
  hgvsp: ENSP00000417546.1:p.Trp129Ter
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp129Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-149100853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100853
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100853
    reference: chr 0
allele count: 1
allele frequency: 1.14038088721633e-5
allele num: 87690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.386G>C
  hgvsp: ENSP00000417546.1:p.Trp129Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.386G>C
  hgvsp: ENSP00000474324.1:p.Trp129Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.386G>C
  hgvsp: ENSP00000359434.3:p.Trp129Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.386G>C
  hgvsp: ENSP00000347339.2:p.Trp129Ser
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.386G>C
  hgvsp: ENSP00000359432.1:p.Trp129Ser
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp129Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-149100870-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100870
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100870
    reference: chr 0
allele count: 1
allele frequency: 1.140927345746623e-5
allele num: 87648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.369G>T
  hgvsp: ENST00000462691.1:c.369G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.369G>T
  hgvsp: ENST00000355203.2:c.369G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.369G>T
  hgvsp: ENST00000370404.1:c.369G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.369G>T
  hgvsp: ENST00000370406.3:c.369G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.369G>T
  hgvsp: ENST00000370409.3:c.369G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 7349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val123Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-149100876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100876
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100876
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 87623
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.363G>A
  hgvsp: ENST00000370409.3:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.363G>A
  hgvsp: ENST00000370406.3:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.363G>A
  hgvsp: ENST00000462691.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.363G>A
  hgvsp: ENST00000370404.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.363G>A
  hgvsp: ENST00000355203.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-38079416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38079416
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 38079416
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000464693
  ensembl transcript: ENST00000579695
  gene symbol: ORMDL3
  hgvsc: ENST00000579695.1:c.275G>A
  hgvsp: ENSP00000464693.1:p.Gly92Glu
  variant of: http://identifiers.org/hgnc/16038
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000462961
  ensembl transcript: ENST00000581284
  gene symbol: ORMDL3
  hgvsc: ENST00000581284.1:c.120G>A
  hgvsp: ENSP00000462961.1:p.Gly41Glu
  variant of: http://identifiers.org/hgnc/16038
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000464298
  ensembl transcript: ENST00000584000
  gene symbol: ORMDL3
  hgvsc: ENST00000584000.1:c.275G>A
  hgvsp: ENSP00000464298.1:p.Gly92Glu
  variant of: http://identifiers.org/hgnc/16038
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000304858
  ensembl transcript: ENST00000304046
  gene symbol: ORMDL3
  hgvsc: ENST00000304046.2:c.275G>A
  hgvsp: ENSP00000304858.2:p.Gly92Glu
  variant of: http://identifiers.org/hgnc/16038
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000377724
  ensembl transcript: ENST00000394169
  gene symbol: ORMDL3
  hgvsc: ENST00000394169.1:c.275G>A
  hgvsp: ENSP00000377724.1:p.Gly92Glu
  variant of: http://identifiers.org/hgnc/16038
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172057
  ensembl protein: ENSP00000464455
  ensembl transcript: ENST00000584220
  gene symbol: ORMDL3
  hgvsc: ENST00000584220.1:c.227G>A
  hgvsp: ENSP00000464455.1:p.Gly76Glu
  variant of: http://identifiers.org/hgnc/16038
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8684
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2078
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39927
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly92Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

X-149100884-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100884
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100884
    reference: chr 0
allele count: 1
allele frequency: 1.142321883460322e-5
allele num: 87541
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.355A>G
  hgvsp: ENSP00000359432.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.355A>G
  hgvsp: ENSP00000359434.3:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.355A>G
  hgvsp: ENSP00000417546.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.355A>G
  hgvsp: ENSP00000347339.2:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.355A>G
  hgvsp: ENSP00000474324.1:p.Lys119Glu
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys119Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

X-149100887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100887
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100887
    reference: chr 0
allele count: 2
allele frequency: 2.286001668781218e-5
allele num: 87489
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.352C>T
  hgvsp: ENSP00000417546.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.352C>T
  hgvsp: ENSP00000359432.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.352C>T
  hgvsp: ENSP00000359434.3:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.352C>T
  hgvsp: ENSP00000347339.2:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.352C>T
  hgvsp: ENSP00000474324.1:p.Gln118Ter
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln118Ter
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

X-149100895-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24149100895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24149100895
    reference: chr 0
allele count: 9
allele frequency: 1.030066496514942e-4
allele num: 87373
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000347339
  ensembl transcript: ENST00000355203
  gene symbol: CXorf40B
  hgvsc: ENST00000355203.2:c.344A>T
  hgvsp: ENSP00000347339.2:p.Asn115Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359432
  ensembl transcript: ENST00000370404
  gene symbol: CXorf40B
  hgvsc: ENST00000370404.1:c.344A>T
  hgvsp: ENSP00000359432.1:p.Asn115Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000359434
  ensembl transcript: ENST00000370406
  gene symbol: CXorf40B
  hgvsc: ENST00000370406.3:c.344A>T
  hgvsp: ENSP00000359434.3:p.Asn115Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000417546
  ensembl transcript: ENST00000462691
  gene symbol: CXorf40B
  hgvsc: ENST00000462691.1:c.344A>T
  hgvsp: ENSP00000417546.1:p.Asn115Ile
  variant of: http://identifiers.org/hgnc/17402
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000197021
  ensembl protein: ENSP00000474324
  ensembl transcript: ENST00000370409
  gene symbol: CXorf40B
  hgvsc: ENST00000370409.3:c.344A>T
  hgvsp: ENSP00000474324.1:p.Asn115Ile
  variant of: http://identifiers.org/hgnc/17402
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23293
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn115Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

X-149100897-G-A
type: Variant
allele count: 6
allele frequency: 6.868289109182903e-5
allele num: 87358
alternate allele: A
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Thr114Thr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4248
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177301624676242e-4
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.059793e6

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 5.273e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 6.93e0

GenotypeQuality
all individuals: 2048
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8525
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 609
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.017501508750754e-4
allele num: 6628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47524
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.418e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 1.942e0

QD
type: SiteQuality
SIO_000300: 2.461e1

DP
type: SiteQuality
SIO_000300: 3.05889e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.105883839447416e-5
allele num: 47486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8493
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.054442e6

VQSLOD
type: SiteQuality
SIO_000300: -2.459e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 2.492e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

QD
type: SiteQuality
SIO_000300: 3.481e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

GenotypeQuality
all individuals: 4228
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.177440244907571e-4
allele num: 8493
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47479
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.054303e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.223726627981947e-4
allele num: 9306
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47436
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 1.3367e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.877e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 3.053859e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
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African
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allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.107570392851121e-5
allele num: 47448
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.079e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.107659233655103e-5
allele num: 47446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 605
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Latino
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allele frequency: 0.0e0
allele num: 9305
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East Asian
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allele num: 6624
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MQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

FS
type: SiteQuality
SIO_000300: 1.182e0

QD
type: SiteQuality
SIO_000300: 1.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.055659e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.102165230187093e-5
allele num: 47570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.10167924171413e-5
allele num: 47581
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.074229240519927e-4
allele num: 9309
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
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DP
type: SiteQuality
SIO_000300: 3.070977e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.215e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.301726673108432e-5
allele num: 47606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.074453e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.149e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.103e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.099825714465699e-5
allele num: 47623
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.114330287497214e-4
allele num: 8974
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8501
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.833e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

DP
type: SiteQuality
SIO_000300: 3.076133e6

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 2.014e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.401e0

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.86e-2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 615
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.183e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47693
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.073652566029633e-4
allele num: 9314
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Other
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South Asian
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East Asian
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num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele frequency: 1.507613447911955e-4
allele num: 6633
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47721
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeQuality
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variant carriers: 6

African
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allele frequency: 1.416597804273403e-3
allele num: 8471
num of homozygotes: 0

European (Finnish)
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allele frequency: 2.428792227864871e-3
allele num: 4529
num of homozygotes: 0

East Asian
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allele frequency: 3.01568154402895e-4
allele num: 6632
num of homozygotes: 0

South Asian
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allele frequency: 3.87409200968523e-2
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Other
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allele frequency: 1.284109149277689e-2
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num of homozygotes: 0

Latino
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allele frequency: 1.610133104336625e-3
allele num: 9316
num of homozygotes: 0

European (Non-Finnish)
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allele count: 405
allele frequency: 8.49519654318916e-3
allele num: 47674
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 2.069e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 1.26374320738026e-4
allele num: 47478
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Latino
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allele frequency: 0.0e0
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Other
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East Asian
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num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 1.795130707954673e-3
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Latino
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African
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East Asian
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 47135
num of homozygotes: 0

Latino
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East Asian
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 603
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.076e0

DP
type: SiteQuality
SIO_000300: 3.015191e6

MQRankSum
type: SiteQuality
SIO_000300: -2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.779e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 1.451e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
all individuals: 1311
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075384449940854e-4
allele num: 9299
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46759
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6619
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.194315060312911e-4
allele num: 8373
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.412973667308927e-3
allele num: 7785
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

FS
type: SiteQuality
SIO_000300: 1.162e0

DP
type: SiteQuality
SIO_000300: 3.001483e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

GenotypeQuality
all individuals: 2071
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7715
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6617
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8367
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.075615790039798e-4
allele num: 9297
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.997024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.176e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.767e0

FS
type: SiteQuality
SIO_000300: 3.526e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46453
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8287
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6611
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.337971635001338e-4
allele num: 7474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.648e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.986548e6

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
all individuals: 30157
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.152991581802915e-5
allele num: 46447
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6609
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.659e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 2.986313e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.443e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.648e0

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 3908
bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 5.62734021600329e-4
allele num: 46203
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 1246
allele frequency: 1.517291768144179e-1
allele num: 8212
num of homozygotes: 73

Latino
type: Population
allele count: 71
allele frequency: 7.645095294497685e-3
allele num: 9287
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.984768762115757e-3
allele num: 7222
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.513775355737209e-3
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.84931506849315e-3
allele num: 584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 3.029453e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.649e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.836e1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

QD
type: SiteQuality
SIO_000300: 1.725e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

FS
type: SiteQuality
SIO_000300: 1.184e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 253
allele frequency: 5.47796903756631e-3
allele num: 46185
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.718213058419244e-3
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 4.857584455729742e-3
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 8.353055826256439e-4
allele num: 7183
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.358351729212656e-4
allele num: 8154
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 5.385029617662897e-4
allele num: 9285
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.337e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.155e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 1.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.503e1

DP
type: SiteQuality
SIO_000300: 2.925017e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 2083
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 573
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7961
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9271
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.883152e6

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 1.514e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: -1.047e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.531e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9261
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7885
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.808e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.051e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

DP
type: SiteQuality
SIO_000300: 2.872406e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.219e0

GenotypeQuality
all individuals: 8701
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 567
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.605394124257505e-4
allele num: 6229
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6569
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.217589923271389e-5
allele num: 45094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9259
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.506e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 2.866374e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 2.333e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 2.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 2082
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9257
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.228759917981635e-5
allele num: 44868
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

VQSLOD
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

MQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 2.859266e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9255
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.791191814253409e-4
allele num: 44663
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.856002e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.562e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

GenotypeQuality
all individuals: 2080
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44419
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7539
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6537
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.737015806843842e-4
allele num: 5757
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

QD
type: SiteQuality
SIO_000300: 1.081e1

FS
type: SiteQuality
SIO_000300: 3.539e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e0

DP
type: SiteQuality
SIO_000300: 2.846754e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6533
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5717
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.25596137794121e-5
allele num: 44327
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 551
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

DP
type: SiteQuality
SIO_000300: 2.843571e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.022e0

FS
type: SiteQuality
SIO_000300: 1.713e0

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 1.082251082251082e-4
allele num: 9240
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.333866880085367e-4
allele num: 7497
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5709
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44325
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6535
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.84317e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.936e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.06044376434583e-4
allele num: 6535
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7501
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44334
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5713
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9241
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.002e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 2.842884e6

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7435
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.534683855125844e-4
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44183
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5641
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4527
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.744e0

FS
type: SiteQuality
SIO_000300: 9.901e0

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

QD
type: SiteQuality
SIO_000300: 1.375e1

MQRankSum
type: SiteQuality
SIO_000300: -1.052e0

DP
type: SiteQuality
SIO_000300: 2.820571e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 685
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1251
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 3.81302e5

MQ
type: SiteQuality
SIO_000300: 2.84e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.95e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

European (Non-Finnish)
type: Population
allele count: 107
allele frequency: 3.220951234196268e-2
allele num: 3322
num of homozygotes: 1

African
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allele count: 7
allele frequency: 1.047904191616766e-2
allele num: 668
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 6.363636363636363e-2
allele num: 110
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 6.938020351526364e-3
allele num: 2162
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 8.994708994708994e-2
allele num: 189
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.667e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.798e-1

QD
type: SiteQuality
SIO_000300: 1.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 2.83361e5

MQ
type: SiteQuality
SIO_000300: 2.558e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.693671509480424e-4
allele num: 8122
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8791
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.129214389417648e-3
allele num: 6199
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.692047377326565e-3
allele num: 591
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.115847262826664e-4
allele num: 44809
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.825637e6

MQRankSum
type: SiteQuality
SIO_000300: -3.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.336e0

FS
type: SiteQuality
SIO_000300: 3.244e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.132e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.149e0

QD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8497
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9305
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47704
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.246623727404945e-3
allele num: 9626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.565e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.052e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -2.975e0

QD
type: SiteQuality
SIO_000300: 1.358e1

DP
type: SiteQuality
SIO_000300: 1.792455e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.265e0

FS
type: SiteQuality
SIO_000300: 3.34e0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47761
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6623
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.030927835051546e-4
allele num: 9700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.623e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.169999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.798953e6

MQRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 4.546e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 2.697e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 875
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GenotypeQuality
all individuals: 1116
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.017293997965412e-4
allele num: 9830
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.746e0

DP
type: SiteQuality
SIO_000300: 1.808923e6

FS
type: SiteQuality
SIO_000300: 4.303e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

MQ
type: SiteQuality
SIO_000300: 4.125e1

VQSLOD
type: SiteQuality
SIO_000300: -2.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47897
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
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South Asian
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allele count: 1
allele frequency: 1.002305302195049e-4
allele num: 9977
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.93e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.815282e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

QD
type: SiteQuality
SIO_000300: 9.460000000000001e0

MQ
type: SiteQuality
SIO_000300: 3.341e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.506704836522525e-4
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47929
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 8509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.818989e6

VQSLOD
type: SiteQuality
SIO_000300: -4.673e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47933
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.81941e6

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQ
type: SiteQuality
SIO_000300: 4.134e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47952
num of homozygotes: 0

South Asian
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allele frequency: 1.388475652087672e-3
allele num: 10083
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.820569e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47382
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084897006087899e-5
allele num: 47964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 4.355e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.821333e6

VQSLOD
type: SiteQuality
SIO_000300: -3.485e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.177e0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47378
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47963
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10107
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1016e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

VQSLOD
type: SiteQuality
SIO_000300: -5.662e0

MQ
type: SiteQuality
SIO_000300: 4.689e1

DP
type: SiteQuality
SIO_000300: 1.821355e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

MQRankSum
type: SiteQuality
SIO_000300: 6.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.65e-2

QD
type: SiteQuality
SIO_000300: 1.245e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.022e0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47412
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47971
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.953e1

DP
type: SiteQuality
SIO_000300: 1.830359e6

VQSLOD
type: SiteQuality
SIO_000300: -2.235e0

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47412
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 73
allele frequency: 8.578143360752057e-3
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169185549602885e-5
allele num: 47971
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 6.436387041407423e-4
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10115
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.830359e6

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

MQ
type: SiteQuality
SIO_000300: 3.953e1

VQSLOD
type: SiteQuality
SIO_000300: -2.235e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.943e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.169185549602885e-5
allele num: 47971
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.474e1

QD
type: SiteQuality
SIO_000300: 8.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.768e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

DP
type: SiteQuality
SIO_000300: 1.819323e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.691e1

MQRankSum
type: SiteQuality
SIO_000300: -3.631e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.702e0

QD
type: SiteQuality
SIO_000300: 5.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.819266e6

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47981
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.878494517435543e-5
allele num: 10123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.408e0

DP
type: SiteQuality
SIO_000300: 1.819609e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.370000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

QD
type: SiteQuality
SIO_000300: 1.55e1

MQ
type: SiteQuality
SIO_000300: 3.557e1

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 9.75e1
variant carriers: 691

European (Non-Finnish)
type: Population
allele count: 469
allele frequency: 9.773480317586012e-3
allele num: 47987
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 118
allele frequency: 2.60485651214128e-2
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 9.653544996245844e-4
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.481481481481481e-3
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.421800947867299e-2
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.879920103395606e-3
allele num: 8511
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.351e0

MQ
type: SiteQuality
SIO_000300: 3.821e1

QD
type: SiteQuality
SIO_000300: 7.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

DP
type: SiteQuality
SIO_000300: 1.915756e6

MQRankSum
type: SiteQuality
SIO_000300: 2.85e0

VQSLOD
type: SiteQuality
SIO_000300: -2.934e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 9.75e1
variant carriers: 148

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 8
allele frequency: 8.580928885551861e-4
allele num: 9323
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.207505518763797e-4
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.349900129244507e-4
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.579778830963665e-3
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 79
allele frequency: 1.646210589926858e-3
allele num: 47989
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.001e0

FS
type: SiteQuality
SIO_000300: 4.402e0

DP
type: SiteQuality
SIO_000300: 1.830521e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

VQSLOD
type: SiteQuality
SIO_000300: -4.209e0

MQ
type: SiteQuality
SIO_000300: 3.862e1

QD
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.736e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.803555e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.621e0

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.782e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.953e1

MQRankSum
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 1.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48053
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083767451552407e-5
allele num: 47990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.261e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.892e0

QD
type: SiteQuality
SIO_000300: 4.33e0

MQ
type: SiteQuality
SIO_000300: 3.531e1

DP
type: SiteQuality
SIO_000300: 1.803662e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 48052
bin: 6.25e1
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GenotypeQuality
all individuals: 365
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.723e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.458e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 3.832e1

VQSLOD
type: SiteQuality
SIO_000300: -4.054e0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.8035e6

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 1115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48053
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.083724031589256e-5
allele num: 47991
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10125
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.523e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.122e0

DP
type: SiteQuality
SIO_000300: 1.803825e6

VQSLOD
type: SiteQuality
SIO_000300: -5.695e0

MQ
type: SiteQuality
SIO_000300: 3.701e1

QD
type: SiteQuality
SIO_000300: 2.32e0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.876543209876543e-5
allele num: 10125
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.803585e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.183e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -4.376e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.532e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.703e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 181
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.506477854775535e-4
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9323
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47999
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.725e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.803518e6

MQ
type: SiteQuality
SIO_000300: 3.543e1

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10121
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.072731173567904e-4
allele num: 9322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083376737015354e-5
allele num: 47999
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e0

DP
type: SiteQuality
SIO_000300: 1.803722e6

VQSLOD
type: SiteQuality
SIO_000300: -4.371e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQ
type: SiteQuality
SIO_000300: 3.413e1

QD
type: SiteQuality
SIO_000300: 1.129e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083376737015354e-5
allele num: 47999
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

FS
type: SiteQuality
SIO_000300: 1.124e0

DP
type: SiteQuality
SIO_000300: 1.803185e6

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.593e0

QD
type: SiteQuality
SIO_000300: 1.211e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 3.232e1

VQSLOD
type: SiteQuality
SIO_000300: -2.704e0

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 845
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GenotypeQuality
all individuals: 48005
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8511
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083463549805196e-5
allele num: 47997
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10117
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.735e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 1.803201e6

MQ
type: SiteQuality
SIO_000300: 3.503e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

QD
type: SiteQuality
SIO_000300: 4.41e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47995
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.703115814226925e-4
allele num: 8505
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.07284626113078e-4
allele num: 9321
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.133e0

FS
type: SiteQuality
SIO_000300: 1.2017e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.064e0

DP
type: SiteQuality
SIO_000300: 1.803473e6

MQRankSum
type: SiteQuality
SIO_000300: -1.227e0

QD
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQ
type: SiteQuality
SIO_000300: 3.315e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8507
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9321
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.251041840306718e-5
allele num: 47992
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10109
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-1

FS
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.802931e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 22

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

African
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allele count: 18
allele frequency: 2.116899917676114e-3
allele num: 8503
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.900009900009901e-5
allele num: 10101
num of homozygotes: 0

Latino
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allele frequency: 2.145922746781116e-4
allele num: 9320
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.083941149501938e-5
allele num: 47986
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.1e0

MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.689e0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.155e0

DP
type: SiteQuality
SIO_000300: 1.803553e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 633
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9319
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.08415831266543e-5
allele num: 47981
num of homozygotes: 0

South Asian
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allele count: 0
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MQ
type: SiteQuality
SIO_000300: 3.268e1

FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele num: 6637
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
allele num: 10095
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 633
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.084114876411988e-5
allele num: 47982
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.135e0

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.346e1

DP
type: SiteQuality
SIO_000300: 1.800564e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10095
num of homozygotes: 0

European (Finnish)
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allele count: 0
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African
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allele frequency: 1.176609012825038e-4
allele num: 8499
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9318
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.931e0

FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.800432e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e-1

MQ
type: SiteQuality
SIO_000300: 2.926e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8497
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6637
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47980
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.073191672032625e-4
allele num: 9318
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10095
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MQ
type: SiteQuality
SIO_000300: 3.061e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

DP
type: SiteQuality
SIO_000300: 1.80035e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.084766610377968e-5
allele num: 47967
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9315
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.694e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.799205e6

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 2.6433e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.843e1

MQ
type: SiteQuality
SIO_000300: 5.246e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47961
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10083
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6635
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e0

MQ
type: SiteQuality
SIO_000300: 3.338e1

FS
type: SiteQuality
SIO_000300: 2.2279e1

QD
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.913e0

DP
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SIO_000300: 1.79886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.081e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.127669e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.507840772014475e-4
allele num: 6632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47923
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9311
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 631
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8441
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 3.647e1

DP
type: SiteQuality
SIO_000300: 1.797331e6

FS
type: SiteQuality
SIO_000300: 2.469e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.148227712137487e-4
allele num: 9310
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8413
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47911
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

DP
type: SiteQuality
SIO_000300: 1.796435e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9309
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 4529
num of homozygotes: 0

African
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allele count: 0
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allele num: 8316
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South Asian
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allele frequency: 8.943654973665905e-4
allele num: 10063
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 630
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47897
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6629
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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