17-46674011-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674011
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674011
    reference: chr 17
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3798G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3798G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4285G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7831C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+526G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.250C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+72G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4285G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+526G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3798G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.439C>G
  hgvsp: ENSP00000225648.3:p.Arg147Gly
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.439C>G
  hgvsp: ENSP00000420009.2:p.Arg147Gly
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+526G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+526G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6060G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3798G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3798G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg147Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-46674014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674014
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674014
    reference: chr 17
allele count: 2
allele frequency: 1.652237129072764e-5
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4288C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.247G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+529C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3795C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+529C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+529C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6063C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+529C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3795C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3795C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.436G>A
  hgvsp: ENSP00000420009.2:p.Gly146Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4288C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3795C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+75C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.436G>A
  hgvsp: ENSP00000225648.3:p.Gly146Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7828G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3795C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly146Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

17-46674020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674020
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674020
    reference: chr 17
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+535G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3789G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3789G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+81G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3789G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7822C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3789G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4294G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.241C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6069G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3789G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.430C>G
  hgvsp: ENSP00000225648.3:p.Pro144Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.430C>G
  hgvsp: ENSP00000420009.2:p.Pro144Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4294G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+535G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+535G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+535G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro144Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-46674021-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674021
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674021
    reference: chr 17
allele count: 1
allele frequency: 8.269383434771103e-6
allele num: 120928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3788C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4295C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6070C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+82C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3788C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.429G>T
  hgvsp: ENST00000225648.3:c.429G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.240G>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.429G>T
  hgvsp: ENST00000484302.2:c.429G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+536C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+536C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+536C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7821G>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3788C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3788C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4295C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3788C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+536C>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly143Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-46674030-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674030
    reference: chr 17
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3779G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+91G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.231C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7812C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+545G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6079G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3779G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+545G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+545G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.420C>T
  hgvsp: ENST00000225648.3:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3779G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+545G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.420C>T
  hgvsp: ENST00000484302.2:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3779G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4304G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3779G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4304G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser140Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-46674040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674040
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674040
    reference: chr 17
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+555A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4314A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3769A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+555A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+555A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3769A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-6T>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-6T>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+555A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+101A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6089A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3769A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7802T>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3769A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-6T>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4314A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3769A>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.416-6T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-46674041-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674041
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674041
    reference: chr 17
allele count: 12
allele frequency: 9.974399042457692e-5
allele num: 120308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+556C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3768C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-7G>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3768C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+556C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4315C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4315C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-7G>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3768C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-7G>C
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3768C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7801G>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+102C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6090C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+556C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+556C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3768C>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2622
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18182
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.416-7G>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-46674042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674042
    reference: chr 17
allele count: 2
allele frequency: 1.663782776520698e-5
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3767G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3767G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3767G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7800C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-8C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+557G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+103G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-8C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+557G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-8C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4316G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4316G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+557G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3767G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6091G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3767G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+557G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.416-8C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

17-46674042-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674042
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674042
    reference: chr 17
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3767G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+103G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7800C>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4316G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3767G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3767G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4316G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+557G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-8C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6091G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+557G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3767G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-8C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+557G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3767G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-8C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+557G>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.416-8C>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

17-46674044-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674044
    reference: chr 17
allele count: 1
allele frequency: 8.319329129299013e-6
allele num: 120202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-10T>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4318A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3765A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+559A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3765A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-10T>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3765A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+559A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3765A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-10T>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7798T>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+559A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4318A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3765A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+105A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6093A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+559A>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

17-46674065-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674065
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674065
    reference: chr 17
allele count: 1
allele frequency: 8.42971305256769e-6
allele num: 118628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+580G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-31C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4339G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6114G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3744G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4339G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-31C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3744G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3744G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+580G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+580G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7777C>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-31C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3744G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+580G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+126G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3744G>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

17-46674073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674073
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674073
    reference: chr 17
allele count: 4
allele frequency: 3.394029901403431e-5
allele num: 117854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+588C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+588C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-39G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+588C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7769G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-39G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3736C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+588C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3736C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3736C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4347C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6122C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-39G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+134C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4347C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3736C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3736C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11470
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ

17-46674074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674074
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674074
    reference: chr 17
allele count: 1
allele frequency: 8.489396743467409e-6
allele num: 117794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3735G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4348G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7768C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+135G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+589G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-40C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3735G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-40C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4348G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6123G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3735G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3735G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3735G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-40C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+589G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+589G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+589G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

17-46674085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46674085
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46674085
    reference: chr 17
allele count: 1
allele frequency: 8.616381464440194e-6
allele num: 116058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+600C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.416-51G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+600C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.416-51G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-3724C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+7757G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-3724C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.52+4359C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-3724C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl transcript: ENST00000470193
  gene symbol: HOXB6
  hgvsc: ENST00000470193.3:n.227-51G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.113+6134C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+146C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-3724C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+600C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+4359C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-3724C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+600C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

17-46675046-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675046
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675046
    reference: chr 17
allele count: 1
allele frequency: 1.30821559392988e-5
allele num: 76440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6243G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5320G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2763G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6796C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1107G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1561G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2763G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1561G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+52C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4395G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+52C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2763G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2763G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2763G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1561G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1561G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19188
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

17-46675049-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675049
    reference: chr 17
allele count: 1
allele frequency: 1.295135471170284e-5
allele num: 77212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+49C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2760G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2760G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6793C>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2760G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6240G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1564G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5323G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+49C>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2760G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1110G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1564G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4392G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1564G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1564G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2760G>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-46675059-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675059
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675059
    reference: chr 17
allele count: 1
allele frequency: 1.265278234683807e-5
allele num: 79034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2750A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6230A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1120A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1574A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5333A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+39T>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4382A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2750A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2750A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2750A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1574A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+39T>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6783T>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1574A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2750A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1574A>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16951
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

17-46675067-C-CGGGGCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675067
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675073
    reference: chr 17
allele count: 145
allele frequency: 1.772096206491983e-3
allele num: 81824
alternate allele: CGGGGCG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+25_415+30dupCGCCCC
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+25_415+30dupCGCCCC
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15945
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14032
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 17379
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-46675068-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675068
    reference: chr 17
allele count: 4
allele frequency: 4.856844508123073e-5
allele num: 82358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+30C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2741G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4373G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+30C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2741G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2741G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6221G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6774C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5342G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2741G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1583G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1583G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1583G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2741G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1583G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1129G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13363
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

17-46675068-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675068
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675068
    reference: chr 17
allele count: 2
allele frequency: 2.428422254061536e-5
allele num: 82358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6221G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2741G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2741G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4373G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1583G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5342G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2741G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1583G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1129G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6774C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+30C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2741G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1583G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+30C>G
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2741G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1583G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-46675072-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675072
    reference: chr 17
allele count: 2
allele frequency: 2.380782325072019e-5
allele num: 84006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1587C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4369C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2737C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2737C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+26G>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6770G>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2737C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2737C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6217C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2737C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1587C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+26G>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1587C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5346C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1587C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1133C>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-46675072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675072
    reference: chr 17
allele count: 1
allele frequency: 1.190391162536009e-5
allele num: 84006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5346C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2737C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+26G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1587C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2737C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6217C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1133C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2737C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1587C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2737C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+26G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4369C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2737C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6770G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1587C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1587C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-46675077-G-GCGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675077
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675080
    reference: chr 17
allele count: 1
allele frequency: 1.152472052552726e-5
allele num: 86770
alternate allele: GCGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4361_53-4359dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1595_166+1597dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+18_415+20dupTCG
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2729_78-2727dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1595_144+1597dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5354_45+5356dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6762_433+6764dupTCG
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+18_415+20dupTCG
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1141_139+1143dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2729_149-2727dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2729_110-2727dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2729_74-2727dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1595_164+1597dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6209_114-6207dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2729_171-2727dupACG
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1595_164+1597dupACG
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-46675079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675079
    reference: chr 17
allele count: 1
allele frequency: 1.139912910653626e-5
allele num: 87726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2730G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2730G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6210G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1594G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2730G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1594G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2730G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1594G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2730G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1140G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+19C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5353G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4362G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+19C>T
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1594G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6763C>T
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15573
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

17-46675095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675095
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675095
    reference: chr 17
allele count: 1
allele frequency: 1.05846987594733e-5
allele num: 94476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1610C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6747G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1156C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2714C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2714C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4346C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2714C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.415+3G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1610C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6194C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.415+3G>A
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1610C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1610C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5369C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2714C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2714C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.415+3G>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

17-46675104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675104
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675104
    reference: chr 17
allele count: 1
allele frequency: 1.030672823218997e-5
allele num: 97024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6738T>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4337A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2705A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1619A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2705A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2705A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2705A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1165A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.409T>C
  hgvsp: ENSP00000225648.3:p.Cys137Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1619A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.409T>C
  hgvsp: ENSP00000420009.2:p.Cys137Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5378A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2705A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1619A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1619A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6185A>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys137Arg
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

17-46675108-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675108
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675108
    reference: chr 17
allele count: 3
allele frequency: 3.065603923973023e-5
allele num: 97860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1169A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1623A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.405T>A
  hgvsp: ENSP00000420009.2:p.Asn135Lys
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.405T>A
  hgvsp: ENSP00000225648.3:p.Asn135Lys
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6734T>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2701A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6181A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2701A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5382A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2701A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2701A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2701A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1623A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1623A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4333A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1623A>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn135Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

17-46675111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675111
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675111
    reference: chr 17
allele count: 1
allele frequency: 1.023164442989277e-5
allele num: 97736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1626C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.402G>A
  hgvsp: ENSP00000225648.3:p.Met134Ile
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2698C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1626C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.402G>A
  hgvsp: ENSP00000420009.2:p.Met134Ile
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1626C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2698C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4330C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1172C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6731G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6178C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2698C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1626C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5385C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2698C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2698C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met134Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-46675127-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675127
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675127
    reference: chr 17
allele count: 1
allele frequency: 1.029442042413012e-5
allele num: 97140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4314G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.386C>G
  hgvsp: ENSP00000420009.2:p.Pro129Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6162G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2682G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1642G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2682G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.386C>G
  hgvsp: ENSP00000225648.3:p.Pro129Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1188G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1642G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6715C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2682G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5401G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1642G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2682G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2682G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1642G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro129Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

17-46675138-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675138
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675138
    reference: chr 17
allele count: 1
allele frequency: 1.04661628953593e-5
allele num: 95546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1653A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4303A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1653A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6704T>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2671A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5412A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.375T>A
  hgvsp: ENST00000225648.3:c.375T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.375T>A
  hgvsp: ENST00000484302.2:c.375T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6151A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2671A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2671A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1653A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1199A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1653A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2671A>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2671A>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr125Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

17-46675143-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675143
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675143
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 93920
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.370T>C
  hgvsp: ENSP00000420009.2:p.Ser124Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1204A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1658A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2666A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2666A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4298A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1658A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2666A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6699T>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2666A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5417A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2666A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6146A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.370T>C
  hgvsp: ENSP00000225648.3:p.Ser124Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1658A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1658A>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser124Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-46675145-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675145
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675145
    reference: chr 17
allele count: 1
allele frequency: 1.077562983556389e-5
allele num: 92802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1660C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2664C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2664C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5419C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1660C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6144C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1206C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6697G>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2664C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.368G>T
  hgvsp: ENSP00000420009.2:p.Cys123Phe
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.368G>T
  hgvsp: ENSP00000225648.3:p.Cys123Phe
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2664C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4296C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2664C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1660C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1660C>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21943
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys123Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

17-46675146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675146
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675146
    reference: chr 17
allele count: 2
allele frequency: 2.155172413793103e-5
allele num: 92800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.367T>C
  hgvsp: ENSP00000225648.3:p.Cys123Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2663A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1207A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2663A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1661A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2663A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6143A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1661A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.367T>C
  hgvsp: ENSP00000420009.2:p.Cys123Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4295A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6696T>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2663A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1661A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2663A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1661A>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5420A>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Cys123Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

17-46675150-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675150
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675150
    reference: chr 17
allele count: 1
allele frequency: 1.100158422812885e-5
allele num: 90896
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.363G>C
  hgvsp: ENSP00000420009.2:p.Gln121His
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6139C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2659C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2659C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2659C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1665C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2659C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2659C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4291C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.363G>C
  hgvsp: ENSP00000225648.3:p.Gln121His
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5424C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1211C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1665C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6692G>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1665C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1665C>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln121His
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-46675151-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675151
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675151
    reference: chr 17
allele count: 1
allele frequency: 1.103022281050077e-5
allele num: 90660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2658T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1212T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6138T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1666T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1666T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4290T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6691A>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2658T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2658T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.362A>C
  hgvsp: ENSP00000420009.2:p.Gln121Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2658T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.362A>C
  hgvsp: ENSP00000225648.3:p.Gln121Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2658T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1666T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5425T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1666T>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19440
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln121Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-46675160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675160
    reference: chr 17
allele count: 1
allele frequency: 1.142387132151343e-5
allele num: 87536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.353C>T
  hgvsp: ENSP00000225648.3:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.353C>T
  hgvsp: ENSP00000420009.2:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6682C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2649G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2649G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2649G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6129G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1675G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1675G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1221G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1675G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5434G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4281G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2649G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2649G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1675G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr118Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

17-46675161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675161
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675161
    reference: chr 17
allele count: 1
allele frequency: 1.145213009619789e-5
allele num: 87320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4280T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2648T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1676T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1676T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2648T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1676T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.352A>G
  hgvsp: ENSP00000225648.3:p.Thr118Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1676T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2648T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5435T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1222T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2648T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.352A>G
  hgvsp: ENSP00000420009.2:p.Thr118Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6128T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2648T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6681A>G
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr118Ala
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

17-46675171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675171
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675171
    reference: chr 17
allele count: 1
allele frequency: 1.206621941213379e-5
allele num: 82876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2638C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.342G>A
  hgvsp: ENST00000484302.2:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1232C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1686C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2638C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2638C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1686C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6118C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2638C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1686C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.342G>A
  hgvsp: ENST00000225648.3:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4270C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2638C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6671G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5445C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1686C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val114Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-46675173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675173
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675173
    reference: chr 17
allele count: 2
allele frequency: 2.446782481037436e-5
allele num: 81740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6669G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2636C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4268C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.340G>A
  hgvsp: ENSP00000420009.2:p.Val114Met
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1234C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1688C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6116C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2636C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1688C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5447C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.340G>A
  hgvsp: ENSP00000225648.3:p.Val114Met
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1688C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1688C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2636C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2636C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2636C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val114Met
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-46675174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675174
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675174
    reference: chr 17
allele count: 1
allele frequency: 1.226271643694511e-5
allele num: 81548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1689G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1689G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1689G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2635G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6668C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6115G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5448G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2635G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.339C>T
  hgvsp: ENST00000484302.2:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2635G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.339C>T
  hgvsp: ENST00000225648.3:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2635G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4267G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1235G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2635G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1689G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser113Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

17-46675177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675177
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675177
    reference: chr 17
allele count: 3
allele frequency: 3.746721618583739e-5
allele num: 80070
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.336G>A
  hgvsp: ENST00000484302.2:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2632C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6665G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1692C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5451C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1238C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2632C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.336G>A
  hgvsp: ENST00000225648.3:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1692C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1692C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2632C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6112C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1692C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2632C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4264C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2632C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys112Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-46675179-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675179
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675179
    reference: chr 17
allele count: 7
allele frequency: 8.822343214357734e-5
allele num: 79344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2630T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2630T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.334A>G
  hgvsp: ENSP00000420009.2:p.Lys112Glu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4262T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2630T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6663A>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6110T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2630T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.334A>G
  hgvsp: ENSP00000225648.3:p.Lys112Glu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2630T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1240T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5453T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1694T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1694T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1694T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1694T>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16075
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Lys112Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

17-46675184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675184
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675184
    reference: chr 17
allele count: 1
allele frequency: 1.296915933909164e-5
allele num: 77106
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.329A>G
  hgvsp: ENSP00000420009.2:p.Gln110Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2625T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2625T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.329A>G
  hgvsp: ENSP00000225648.3:p.Gln110Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2625T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6658A>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1699T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1699T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6105T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2625T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1699T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4257T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2625T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1245T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5458T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1699T>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln110Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-46675186-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675186
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675186
    reference: chr 17
allele count: 1
allele frequency: 1.33272916277954e-5
allele num: 75034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2623C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1701C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6103C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6656G>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4255C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2623C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.327G>T
  hgvsp: ENST00000225648.3:c.327G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2623C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.327G>T
  hgvsp: ENST00000484302.2:c.327G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2623C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1247C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1701C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1701C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1701C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5460C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2623C>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala109Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-46675186-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675186
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675186
    reference: chr 17
allele count: 1
allele frequency: 1.33272916277954e-5
allele num: 75034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.327G>A
  hgvsp: ENST00000225648.3:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5460C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6103C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.327G>A
  hgvsp: ENST00000484302.2:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1701C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2623C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2623C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1701C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2623C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1247C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2623C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2623C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6656G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1701C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1701C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4255C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala109Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-46675189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675189
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675189
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 73690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2620G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2620G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1250G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1704G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2620G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.324C>T
  hgvsp: ENST00000484302.2:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2620G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1704G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6653C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1704G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.324C>T
  hgvsp: ENST00000225648.3:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2620G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5463G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6100G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1704G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4252G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys108Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

17-46675198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675198
    reference: chr 17
allele count: 22
allele frequency: 3.194517047104606e-4
allele num: 68868
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.315G>C
  hgvsp: ENSP00000225648.3:p.Lys105Asn
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1713C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.315G>C
  hgvsp: ENSP00000420009.2:p.Lys105Asn
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2611C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1713C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2611C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2611C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1259C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1713C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2611C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6644G>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2611C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1713C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6091C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5472C>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4243C>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17581
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22107
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Lys105Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-46675198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675198
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675198
    reference: chr 17
allele count: 1
allele frequency: 1.452053203229366e-5
allele num: 68868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1259C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2611C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.315G>A
  hgvsp: ENST00000484302.2:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1713C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2611C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6644G>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6091C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2611C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.315G>A
  hgvsp: ENST00000225648.3:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4243C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2611C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2611C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1713C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1713C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5472C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1713C>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys105Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-46675212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675212
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675212
    reference: chr 17
allele count: 1
allele frequency: 1.612955256621181e-5
allele num: 61998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2597G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2597G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6077G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2597G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6630C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.301C>T
  hgvsp: ENSP00000225648.3:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.301C>T
  hgvsp: ENSP00000420009.2:p.Pro101Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5486G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1727G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1727G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1273G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1727G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2597G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1727G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2597G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4229G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro101Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

17-46675214-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675214
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675214
    reference: chr 17
allele count: 1
allele frequency: 1.652455548945733e-5
allele num: 60516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6628A>C
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2595T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1275T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.299A>C
  hgvsp: ENSP00000420009.2:p.His100Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1729T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.299A>C
  hgvsp: ENSP00000225648.3:p.His100Pro
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6075T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2595T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1729T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2595T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2595T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1729T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4227T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1729T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2595T>G
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5488T>G
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16820
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His100Pro
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-46675216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675216
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675216
    reference: chr 17
allele count: 3
allele frequency: 4.96310756708467e-5
allele num: 60446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2593G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.297C>T
  hgvsp: ENST00000225648.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6073G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1731G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1277G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.297C>T
  hgvsp: ENST00000484302.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1731G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2593G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1731G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4225G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2593G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1731G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6626C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5490G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2593G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2593G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16603
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe99Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

17-46675220-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675220
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675220
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 58686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4221G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2589G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1735G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.293C>A
  hgvsp: ENSP00000225648.3:p.Pro98Gln
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6622C>A
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6069G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2589G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.293C>A
  hgvsp: ENSP00000420009.2:p.Pro98Gln
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2589G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1281G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1735G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1735G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5494G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1735G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2589G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2589G>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24643
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro98Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

17-46675221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675221
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675221
    reference: chr 17
allele count: 2
allele frequency: 3.457456003872351e-5
allele num: 57846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1736G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2588G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6068G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2588G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2588G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4220G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.292C>T
  hgvsp: ENSP00000420009.2:p.Pro98Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1282G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.292C>T
  hgvsp: ENSP00000225648.3:p.Pro98Ser
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5495G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1736G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1736G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2588G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2588G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1736G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6621C>T
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro98Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS

17-46675221-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675221
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675221
    reference: chr 17
allele count: 2
allele frequency: 3.457456003872351e-5
allele num: 57846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2588G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1282G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2588G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1736G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.292C>G
  hgvsp: ENSP00000420009.2:p.Pro98Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1736G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2588G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6068G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1736G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5495G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2588G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.292C>G
  hgvsp: ENSP00000225648.3:p.Pro98Ala
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1736G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6621C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2588G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4220G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro98Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

17-46675222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675222
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675222
    reference: chr 17
allele count: 2
allele frequency: 3.451727589658624e-5
allele num: 57942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1737G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1737G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2587G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6067G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.291C>T
  hgvsp: ENST00000484302.2:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2587G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2587G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4219G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1283G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1737G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.291C>T
  hgvsp: ENST00000225648.3:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1737G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5496G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2587G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2587G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6620C>T
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16335
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro97Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

17-46675223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675223
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675223
    reference: chr 17
allele count: 1
allele frequency: 1.734184239733629e-5
allele num: 57664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2586G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2586G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2586G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.290C>T
  hgvsp: ENSP00000420009.2:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6066G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.290C>T
  hgvsp: ENSP00000225648.3:p.Pro97Leu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1738G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1284G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4218G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1738G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6619C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2586G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1738G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1738G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2586G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5497G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro97Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-46675226-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675226
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675226
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 56100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2583T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1741T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2583T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1741T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.287A>G
  hgvsp: ENSP00000225648.3:p.Gln96Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2583T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1287T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6063T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1741T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1741T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2583T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4215T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.287A>G
  hgvsp: ENSP00000420009.2:p.Gln96Arg
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6616A>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2583T>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5500T>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25216
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln96Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

17-46675231-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675231
    reference: chr 17
allele count: 3
allele frequency: 5.703855806525211e-5
allele num: 52596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2578G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2578G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4210G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.282C>T
  hgvsp: ENST00000484302.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5505G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6058G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1746G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1746G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1746G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2578G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1292G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6611C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1746G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.282C>T
  hgvsp: ENST00000225648.3:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2578G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2578G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp94Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-46675231-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675231
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675231
    reference: chr 17
allele count: 1
allele frequency: 1.901285268841737e-5
allele num: 52596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2578G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4210G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2578G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2578G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2578G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2578G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.282C>G
  hgvsp: ENSP00000225648.3:p.Asp94Glu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6611C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1746G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1292G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6058G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.282C>G
  hgvsp: ENSP00000420009.2:p.Asp94Glu
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1746G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5505G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1746G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1746G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp94Glu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-46675234-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675234
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675234
    reference: chr 17
allele count: 312
allele frequency: 6.012024048096192e-3
allele num: 51896
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.279C>T
  hgvsp: ENST00000484302.2:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1295G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2575G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6608C>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1749G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6055G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1749G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2575G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1749G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.279C>T
  hgvsp: ENST00000225648.3:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2575G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2575G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2575G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4207G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5508G>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1749G>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 1.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala93Ala
num of homozygotes: 12
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

17-46675234-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675234
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675234
    reference: chr 17
allele count: 2
allele frequency: 3.853861569292431e-5
allele num: 51896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2575G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.279C>G
  hgvsp: ENST00000484302.2:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2575G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1749G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1749G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4207G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1295G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1749G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5508G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.279C>G
  hgvsp: ENST00000225648.3:c.279C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6608C>G
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2575G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1749G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2575G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6055G>C
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2575G>C
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala93Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-46675236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675236
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675236
    reference: chr 17
allele count: 1
allele frequency: 1.963864886095837e-5
allele num: 50920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4205C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5510C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.277G>A
  hgvsp: ENSP00000225648.3:p.Ala93Thr
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1751C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2573C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1751C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2573C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1297C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2573C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1751C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2573C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1751C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6053C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.277G>A
  hgvsp: ENSP00000420009.2:p.Ala93Thr
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2573C>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6606G>A
  variant of: http://identifiers.org/hgnc/5114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala93Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/17-46675238-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675238
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675238
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 49736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000476204
  gene symbol: HOXB-AS3
  hgvsc: ENST00000476204.1:n.171-2571C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000120093
  ensembl transcript: ENST00000552000
  gene symbol: HOXB3
  hgvsc: ENST00000552000.2:n.433+6604G>T
  variant of: http://identifiers.org/hgnc/5114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4203C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000225648
  ensembl transcript: ENST00000225648
  gene symbol: HOXB6
  hgvsc: ENST00000225648.3:c.275G>T
  hgvsp: ENSP00000225648.3:p.Gly92Val
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000465846
  gene symbol: HOXB-AS3
  hgvsc: ENST00000465846.2:n.78-2571C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.275G>T
  hgvsp: ENSP00000420009.2:p.Gly92Val
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000480872
  gene symbol: HOXB-AS3
  hgvsc: ENST00000480872.1:n.110-2571C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000460041
  gene symbol: HOXB-AS3
  hgvsc: ENST00000460041.1:n.164+1753C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000466037
  gene symbol: HOXB-AS3
  hgvsc: ENST00000466037.2:n.139+1299C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000481995
  gene symbol: HOXB-AS3
  hgvsc: ENST00000481995.1:n.166+1753C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2571C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000467155
  gene symbol: HOXB-AS3
  hgvsc: ENST00000467155.2:n.114-6051C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000477144
  gene symbol: HOXB-AS3
  hgvsc: ENST00000477144.1:n.144+1753C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474324
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474324.1:n.164+1753C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000429755
  gene symbol: HOXB-AS3
  hgvsc: ENST00000429755.4:n.74-2571C>A
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000487849
  gene symbol: HOXB-AS3
  hgvsc: ENST00000487849.3:n.45+5512C>A
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly92Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

17-46675240-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 46675240
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 46675240
    reference: chr 17
allele count: 4853
allele frequency: 9.752813504823152e-2
allele num: 49760
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108511
  ensembl protein: ENSP00000420009
  ensembl transcript: ENST00000484302
  gene symbol: HOXB6
  hgvsc: ENST00000484302.2:c.273C>A
  hgvsp: ENST00000484302.2:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000492897
  gene symbol: HOXB-AS3
  hgvsc: ENST00000492897.3:n.53-4201G>T
  variant of: http://identifiers.org/hgnc/40283
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000233101
  ensembl transcript: ENST00000474040
  gene symbol: HOXB-AS3
  hgvsc: ENST00000474040.1:n.149-2569G>T
  variant of: http://identifiers.org/hgnc/40283
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Ser91Ser
num of homozygotes: 187
reference allele: G

GenotypeDepth
all individuals: 18760
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1557
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2626
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7373
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 715
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4426
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 802
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14887
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1077
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12956
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.066e0

FS
type: SiteQuality
SIO_000300: 7.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

DP
type: SiteQuality
SIO_000300: 2.192556e6

QD
type: SiteQuality
SIO_000300: 7.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeDepth
all individuals: 861
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1557
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 174
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14864
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4427
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4639
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1077
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2625
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 396
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12955
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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DP
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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African
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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Latino
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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QD
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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QD
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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European (Finnish)
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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DP
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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African
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European (Non-Finnish)
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Other
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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Other
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InbreedingCoeff
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SIO_000300: -2.1e-3

ReadPosRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 1.680672268907563e-4
allele num: 5950
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South Asian
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Other
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QD
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BaseQRankSum
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VQSLOD
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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SIO_000300: 7.91e-1

ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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Other
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Latino
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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DP
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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African
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South Asian
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East Asian
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FS
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InbreedingCoeff
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MQ
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DP
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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MQ
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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South Asian
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East Asian
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ReadPosRankSum
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Latino
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allele num: 8896
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European (Finnish)
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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African
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Latino
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DP
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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VQSLOD
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FS
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQ
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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DP
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QD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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FS
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DP
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MQ
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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Latino
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African
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South Asian
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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Other
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

Other
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FS
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QD
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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FS
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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DP
type: SiteQuality
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MQ
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Latino
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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FS
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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QD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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ClippingRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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South Asian
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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SIO_000300: 0.0e0

DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 12414
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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Other
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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European (Finnish)
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South Asian
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East Asian
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FS
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InbreedingCoeff
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QD
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Other
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African
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European (Non-Finnish)
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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African
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East Asian
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Other
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ClippingRankSum
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SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 5.849e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

DP
type: SiteQuality
SIO_000300: 8.85808e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQRankSum
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SIO_000300: 1.64e0

VQSLOD
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SIO_000300: -1.744e0

FS
type: SiteQuality
SIO_000300: 1.623e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

QD
type: SiteQuality
SIO_000300: 1.571e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11924
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.453626459907744e-5
allele num: 40756
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
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SIO_000300: 2.03e0

MQRankSum
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SIO_000300: 1.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 2.42e0

ClippingRankSum
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SIO_000300: 2.22e0

DP
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SIO_000300: 8.67502e5

QD
type: SiteQuality
SIO_000300: 1.142e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40756
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.908396946564885e-4
allele num: 5240
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.67502e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
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SIO_000300: 2.03e0

VQSLOD
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SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 1.142e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40030
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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BaseQRankSum
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SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -3.91e-1

QD
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SIO_000300: 7.16e0

MQRankSum
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SIO_000300: 9.53e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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num of homozygotes: 0

Other
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East Asian
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African
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allele frequency: 2.459592410400562e-3
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num of homozygotes: 0

Latino
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allele frequency: 3.036744609778318e-4
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.075615790039798e-4
allele num: 37188
num of homozygotes: 0

South Asian
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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Latino
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.009147809340395e-5
allele num: 33232
num of homozygotes: 0

African
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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MQ
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ClippingRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 4.730368968779565e-4
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 6.170554115759595e-5
allele num: 32412
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 3914
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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DP
type: SiteQuality
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VQSLOD
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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Latino
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East Asian
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African
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European (Finnish)
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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European (Finnish)
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East Asian
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.74e0

DP
type: SiteQuality
SIO_000300: 7.21989e5

FS
type: SiteQuality
SIO_000300: 1.508e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.092e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.231644260599793e-5
allele num: 30944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

DP
type: SiteQuality
SIO_000300: 7.19126e5

BaseQRankSum
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SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 9.18e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 6.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

DP
type: SiteQuality
SIO_000300: 7.06176e5

GenotypeDepth
all individuals: 3713
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 73
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.868549172346641e-4
allele num: 4108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.566079452250196e-5
allele num: 28042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 8.75e0

DP
type: SiteQuality
SIO_000300: 6.87142e5

FS
type: SiteQuality
SIO_000300: 2.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.328e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 28042
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.54380606986066e-5
allele num: 10478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 84

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

African
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allele count: 299
allele frequency: 7.317670093000489e-2
allele num: 4086
num of homozygotes: 12

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.23222680263253e-5
allele num: 27654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 2.365591397849462e-3
allele num: 4650
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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MQRankSum
type: SiteQuality
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MQ
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 379
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.92049164586134e-4
allele num: 10414
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 6.83206e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.184e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14769
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7887
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3046
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.295978905735003e-4
allele num: 3034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.29e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.078e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

DP
type: SiteQuality
SIO_000300: 6.7596e5

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8248
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26219
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 14489
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2912
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5607
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

QD
type: SiteQuality
SIO_000300: 1.55e1

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 6.67294e5